View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_low_1 (Length: 723)
Name: NF0679_low_1
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 34 - 713
Target Start/End: Original strand, 3360965 - 3361640
Alignment:
| Q |
34 |
gatcccttttcatgaagctcaaaaagaagttttgagctttgagagttttctgaagtttcaaaatcttcacctcctccctcccttatgataccattgtctg |
133 |
Q |
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| T |
3360965 |
gatccctttacatgaagctcaaaaagaagttctgagctttgagagttttctgaagttttaaaatcttcacctcctccctcccttatgataccattgtctg |
3361064 |
T |
|
| Q |
134 |
gtgcatgttcagtaacattgaggatgttctcatctagatgctgcttcaaattgaagaaaaacacagttaagtttgataccaagtgtgaagaagattaata |
233 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361065 |
gtgcatgttcagtaacattcaggatgttctcatctagatgctgcttcaaattgaagaaaaacacagttaagtttgataccaagtgtgaagaagattaata |
3361164 |
T |
|
| Q |
234 |
tttgtgtgcaagaagaaacaacaatatcatctaaagcactgaacttcatgtaattaaagccaaaccttgccatgagaatcttgccgatgatcttcaagta |
333 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3361165 |
tttgtgtacaagaagaaacaacaatatcatctaaagcactgaacttcatgtaa----agccaaaccttgccatgtgaatcttgccgatgatcttcaagta |
3361260 |
T |
|
| Q |
334 |
aagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgc |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3361261 |
aagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgaccgc |
3361360 |
T |
|
| Q |
434 |
agcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagaga |
533 |
Q |
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| T |
3361361 |
agcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcaatacaggccaaatcattctcaaggcacaagaga |
3361460 |
T |
|
| Q |
534 |
tcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcat |
633 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361461 |
tcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcat |
3361560 |
T |
|
| Q |
634 |
ctgcaaaactcaacagaaagctacagtaaattatcaacatacacggtgggatttatctcctcgaattagtcagtcctatg |
713 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
3361561 |
ctgcaaaactcaacagaaagctacagtaaattatcaacatagacggttgaatttgtctcctcgaattagtcagtcctatg |
3361640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 336 - 664
Target Start/End: Original strand, 35907360 - 35907688
Alignment:
| Q |
336 |
gccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcag |
435 |
Q |
| |
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||||||| ||||||||||||| ||||||| ||| ||||| |||||| | ||||| | || ||| ||| | |||| ||||||| |||||| | || ||| |
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| T |
35907360 |
gccttcactatttcatgaagtctctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaa |
35907459 |
T |
|
| Q |
436 |
cgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatc |
535 |
Q |
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| ||||| |||| |||| ||| |||||| || | || || ||||||||||||||||||| ||||| |||||||| ||||||| |||| || ||||| |
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| T |
35907460 |
catcaagctggttgattttttctgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagatt |
35907559 |
T |
|
| Q |
536 |
attttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatct |
635 |
Q |
| |
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|||| | || |||||| ||| |||||| |||||| ||| | ||||||||| |||||||| | | | ||| | ||||| ||| || || |||||| |
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| T |
35907560 |
catttccaattgctcaatctcattatctgcattggtgatcatacatctcaaaacctgaacacagcacttctcatccttggcatcttcctccatatcatct |
35907659 |
T |
|
| Q |
636 |
gcaaaactcaacagaaagctacagtaaat |
664 |
Q |
| |
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||||||||||||| |||||| |||||||| |
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| T |
35907660 |
gcaaaactcaacaaaaagctccagtaaat |
35907688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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