View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_low_10 (Length: 435)
Name: NF0679_low_10
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 30 - 421
Target Start/End: Original strand, 8378579 - 8378970
Alignment:
| Q |
30 |
aatggttcctcctcaggtcaagaaccgaaggatgcagattatgttctactaccattaccatgtcttagtgatgaactagagacaatgatattggcaaggt |
129 |
Q |
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| T |
8378579 |
aatggttcctcctcaggtcaagaaccgcaggatgcagattatgttctactaccattaccatgtcttagtgatgaactagagacaatgatattggcaaggt |
8378678 |
T |
|
| Q |
130 |
ttccaatttcaaaacactggaaaatgtgttgcttaaacaagaagtttttaaatctaatgaagaatggtgaaatctataagataagaagaatgatagggtt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8378679 |
ttccaatttcaaaacactggaaaatgtgttgcttaaacaacaagtttttaaatctaatgaagaatggtgaaatctataagataagaagaatgatagggtt |
8378778 |
T |
|
| Q |
230 |
gaaagaagcatcagtttttatgttagcaagtggtggtgaaaggaattggtgtgtgtttgatggtcagttcaagtcatgcaggaagctacctattattcca |
329 |
Q |
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| T |
8378779 |
gaaagaaccatcagtttttatgttagcaagtggtggtgaaaggaattggtgtgtgtttgatggtcaattcaagtcatgcaggaagctacctattattcca |
8378878 |
T |
|
| Q |
330 |
tctgattacatatttgaaaatggtgagaaagagtccttttcttcaggcacacatttatttgtttcaggtatgtattttgagtaattggttat |
421 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8378879 |
tctgattacatatttgaaaatggtgaaaaagagtccttttctgcaggcacacatttatttgtttcaggtatgtattttgagtaattggttat |
8378970 |
T |
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