View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679_low_11 (Length: 424)

Name: NF0679_low_11
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679_low_11
NF0679_low_11
[»] chr7 (8 HSPs)
chr7 (188-403)||(24511362-24511577)
chr7 (11-178)||(24511156-24511323)
chr7 (74-178)||(24509283-24509387)
chr7 (11-79)||(24510068-24510136)
chr7 (258-346)||(25035874-25035962)
chr7 (242-315)||(17711004-17711077)
chr7 (51-93)||(2046892-2046934)
chr7 (188-225)||(24509207-24509244)
[»] chr6 (1 HSPs)
chr6 (9-127)||(13146572-13146690)
[»] chr5 (3 HSPs)
chr5 (229-346)||(14417526-14417644)
chr5 (77-178)||(15162677-15162778)
chr5 (293-345)||(17039399-17039451)
[»] chr4 (3 HSPs)
chr4 (284-346)||(8569817-8569879)
chr4 (284-346)||(54189333-54189395)
chr4 (26-94)||(46632290-46632358)
[»] chr3 (2 HSPs)
chr3 (284-346)||(28695778-28695840)
chr3 (43-140)||(27427602-27427699)
[»] chr8 (1 HSPs)
chr8 (57-136)||(19400738-19400816)
[»] chr1 (2 HSPs)
chr1 (43-174)||(23544403-23544528)
chr1 (293-339)||(43532021-43532067)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 188 - 403
Target Start/End: Original strand, 24511362 - 24511577
Alignment:
Q  188 attagaataatattagaatttgcgttcagtcacacaaagaacaaaaataataatctgggctaataaggcgtggaagcatgtaataaaaggaggtgtatgt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24511362 attagaataatattagaatttgcgttcagtcacacaaagaacaaaaataataatctggactaataaggcgtggaagcatgtaataaaaggaggtgtatgt 24511461  T
Q  288 aacactttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgtcgtagtgcatgaaccaccacatagatgaagcaaagaaaacatcctgct 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  24511462 aacactttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgtagtagtgcatgaaccaccacatagatgaagcaaagaaaacatcctgcg 24511561  T
Q  388 ataaacgatgatgatg 403  Q
    ||||||||||||||||    
T  24511562 ataaacgatgatgatg 24511577  T

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Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 24511156 - 24511323
Alignment:
Q  11 cataggtcataactattagctatcaaaggtgcaaacaatatatcacatttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24511156 cataggtcataactattagctatcaaaggtgcaaacaatatatcacatttaaattcaatatgtaagtatatcataaagtagaacgtaaccaaagtaaaat 24511255  T
Q  111 taccatgactcaaaccatgaactgcactaaagcattccatcaatcccagagccagccttttcaaagaa 178  Q
    ||||||||||||||||||||||  | ||||||||||||| ||||||| |||||||||| |||||||||    
T  24511256 taccatgactcaaaccatgaacatctctaaagcattccaccaatcccggagccagcctattcaaagaa 24511323  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 24509387 - 24509283
Alignment:
Q  74 aagtatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaaccatgaactgcactaaagcattccatcaatcccagagccagccttttca 173  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||  |||||||||| || |    
T  24509387 aagtatatcataaagtggaacgaaaccaaagtaaaattaccatgactcaaaccatgaactgcactaaaatattccaccaatcctggagccagcctattaa 24509288  T
Q  174 aagaa 178  Q
    |||||    
T  24509287 aagaa 24509283  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 24510136 - 24510068
Alignment:
Q  11 cataggtcataactattagctatcaaaggtgcaaacaatatatcacatttaaattcaatatgtaagtat 79  Q
    ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  24510136 cataggtcataaccattagctatcaaaggtccaaacactatatcacatttaaattcaatatgtaagtat 24510068  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 25035874 - 25035962
Alignment:
Q  258 tggaagcatgtaataaaaggaggtgtatgtaacactttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgtcgtagtg 346  Q
    ||||||||  || |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||| || ||||||    
T  25035874 tggaagcacatattaaaaggaggtgcatgtaacactttctaaaaaatgtcacatataagatgttgcaaaaagtcatatgcgtagtagtg 25035962  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 17711004 - 17711077
Alignment:
Q  242 ctgggctaataaggcgtggaagcatgtaataaaaggaggtgtatgtaacactttttaaaaaatgtcacatataa 315  Q
    ||||||||| ||||| ||||||||  || |||||||||||| || ||||||||| || ||||||||||||||||    
T  17711004 ctgggctaaaaaggcatggaagcacatattaaaaggaggtgcatctaacactttctacaaaatgtcacatataa 17711077  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 2046934 - 2046892
Alignment:
Q  51 tatcacatttaaattcaatatgtaagtatatcataaagtagaa 93  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  2046934 tatcacatttaaattcaagatgtatgtatatcataaagtagaa 2046892  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 24509244 - 24509207
Alignment:
Q  188 attagaataatattagaatttgcgttcagtcacacaaa 225  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  24509244 attagaataatattagaatttgtgttcaatcacacaaa 24509207  T

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Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 13146572 - 13146690
Alignment:
Q  9 agcataggtcataactattagctatcaaaggtgcaaacaatatatcacatttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaa 108  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13146572 agcataggtcataaccattagctatcaaaggtccaaacactatatcacctttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaa 13146671  T
Q  109 attaccatgactcaaacca 127  Q
    |||||||||||||||||||    
T  13146672 attaccatgactcaaacca 13146690  T

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Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 229 - 346
Target Start/End: Original strand, 14417526 - 14417644
Alignment:
Q  229 caaaaataataatctgggctaataaggcgtggaagcatgtaataaaaggaggtgtatgtaacacttttt-aaaaaatgtcacatataatatgttgcaaaa 327  Q
    |||||||||||| || |||||| ||||| |||| |||| || |||||||||||| |||||||||||||| ||||||||||||||| || |||||||||||    
T  14417526 caaaaataataaactcggctaaaaaggcatggaggcatatattaaaaggaggtgcatgtaacactttttaaaaaaatgtcacataaaagatgttgcaaaa 14417625  T
Q  328 ggtcatatgtgtcgtagtg 346  Q
      |||||||||| ||||||    
T  14417626 cttcatatgtgtagtagtg 14417644  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 15162677 - 15162778
Alignment:
Q  77 tatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaaccatgaactgcactaaagcattccatcaatcccagagccagccttttcaaag 176  Q
    |||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||||||||  |||||| ||||||| |||| |||||  ||||||    
T  15162677 tatatcataatgtagaatgaaaccaaagtaaaattaccatgattaaaaccatgaactgcactaaaaaattccaccaatcccggagcaagcctactcaaag 15162776  T
Q  177 aa 178  Q
    ||    
T  15162777 aa 15162778  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 17039399 - 17039451
Alignment:
Q  293 tttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgtcgtagt 345  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  17039399 tttttaaaatatgtcacatataagatgttgcaaaaggtcatatgtgtagtagt 17039451  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 8569879 - 8569817
Alignment:
Q  284 atgtaacactttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgtcgtagtg 346  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  8569879 atgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagtagtg 8569817  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 54189333 - 54189395
Alignment:
Q  284 atgtaacactttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgtcgtagtg 346  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  54189333 atgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggttatatgtgtcgtagtg 54189395  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 46632290 - 46632358
Alignment:
Q  26 ttagctatcaaaggtgcaaa-caatatatcacatttaaattcaatatgtaagtatatcataaagtagaac 94  Q
    ||||||| ||||||| |||| || |||||||||| ||| |||||||||||  ||||||||||||||||||    
T  46632290 ttagctaccaaaggtccaaaacactatatcacatataa-ttcaatatgtatctatatcataaagtagaac 46632358  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 28695840 - 28695778
Alignment:
Q  284 atgtaacactttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgtcgtagtg 346  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  28695840 atgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagtagtg 28695778  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 27427602 - 27427699
Alignment:
Q  43 aaacaatatatcacatttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaaccatgaactgcactaa 140  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||| |   ||||||| ||||| ||||| |||||| | |||| ||||||||||||||||    
T  27427602 aaacattatataacatttaaactcaatatttatgtatatcatacacacgaacgaacccaaactaaaactaccattattcaacccatgaactgcactaa 27427699  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 19400816 - 19400738
Alignment:
Q  57 atttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaaccatgaactgca 136  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||    
T  19400816 atttaaattcaatatttatgtatataataaagtagaacgaaaccaaattaaaa-taccatgattcaaagcatgaactgca 19400738  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 23544403 - 23544528
Alignment:
Q  43 aaacaatatatcacatttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaaccatgaactgcactaaag 142  Q
    ||||| |||||||| |||||||||||  |||  ||||||||||   |||| | |||| |||||||| ||||||| | ||||||||||||||||||| |||    
T  23544403 aaacagtatatcacgtttaaattcaagctgt--gtatatcata---tagagccaaacaaaagtaaacttaccattattcaaaccatgaactgcact-aag 23544496  T
Q  143 cattccatcaatcccagagccagccttttcaa 174  Q
    ||||||| ||| ||| |||||| ||| |||||    
T  23544497 cattccaccaaccccggagccaacctattcaa 23544528  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 43532021 - 43532067
Alignment:
Q  293 tttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgt 339  Q
    |||||| |||||||||||||||| ||||||||||| |||||| ||||    
T  43532021 tttttataaaatgtcacatataagatgttgcaaaaagtcatacgtgt 43532067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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