View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0679_low_12 (Length: 394)
Name: NF0679_low_12
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_12 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 13671450 - 13671176
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671450 |
ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
13671351 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaaattcc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
13671350 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacaccttcaaatatccaacttcc |
13671251 |
T |
|
| Q |
205 |
acaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctgctcc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13671250 |
acaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctactcc |
13671176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 13656799 - 13656530
Alignment:
| Q |
10 |
tacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctccc |
109 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656799 |
tacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctccc |
13656700 |
T |
|
| Q |
110 |
acttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaaattccacaac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
13656699 |
acttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacaccttcaaatatccaacttccacaac |
13656600 |
T |
|
| Q |
210 |
ctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctgctcc |
279 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13656599 |
ctacaaggcaaaagaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctactcc |
13656530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 5739502 - 5739228
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5739502 |
ctatctacaaagcaacctacacatcatcccatatctcaaacacatacaaatttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
5739403 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaaattcc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
5739402 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatatccaacaatc |
5739303 |
T |
|
| Q |
205 |
acaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctgctcc |
279 |
Q |
| |
|
| | |||||| ||| || | |||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
5739302 |
gctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaatttcccacctttcctctctactcc |
5739228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 13671651 - 13671382
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671651 |
ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
13671552 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaa-attc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| | || |
|
|
| T |
13671551 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaaaacaccttcaaatatccaacaatc |
13671452 |
T |
|
| Q |
204 |
cacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctct |
274 |
Q |
| |
|
| | | |||||| ||| || | |||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
13671451 |
c-ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctct |
13671382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 13671852 - 13671583
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671852 |
ctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
13671753 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaa-attc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | || |
|
|
| T |
13671752 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaaaacaccttcaaatatccaacaatc |
13671653 |
T |
|
| Q |
204 |
cacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctct |
274 |
Q |
| |
|
| | | |||||| ||| || | |||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
13671652 |
c-ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctct |
13671583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 13657005 - 13656736
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13657005 |
ctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
13656906 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaa-attc |
203 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | || |
|
|
| T |
13656905 |
ctcccacttctcaaatacctacaaatatccaacaaccccactctacaatgaaacctacacatcatcttacatctaaaacaccttcaaatatccaacaatc |
13656806 |
T |
|
| Q |
204 |
cacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctct |
274 |
Q |
| |
|
|| | ||||| |||||| | |||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
13656805 |
ca-tatatacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctct |
13656736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 5739305 - 5739156
Alignment:
| Q |
1 |
atcgctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
5739305 |
atcgctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaatttcccacctttcctctctactccaagtccacaaatgtctacaatt |
5739206 |
T |
|
| Q |
101 |
catgctcccacttctcaaatacctacaaatacccaacaaccccactctac |
150 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
5739205 |
catactcccacctctcaaatacctacaaatatccaatctccccactctac |
5739156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 13656583 - 13656458
Alignment:
| Q |
25 |
acatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacct |
124 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
13656583 |
acatcatcccatatctcaaacatttacaaatttcccacctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacct |
13656484 |
T |
|
| Q |
125 |
acaaatacccaacaaccccactctac |
150 |
Q |
| |
|
||||||| |||| ||||||||||| |
|
|
| T |
13656483 |
acaaatatccaatctccccactctac |
13656458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 13671229 - 13671104
Alignment:
| Q |
25 |
acatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacct |
124 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
13671229 |
acatcatcccatatctcaaacatttacaaatttcccacctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacct |
13671130 |
T |
|
| Q |
125 |
acaaatacccaacaaccccactctac |
150 |
Q |
| |
|
||||||| |||| ||||||||||| |
|
|
| T |
13671129 |
acaaatatccaatctccccactctac |
13671104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 18581556 - 18581830
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581556 |
ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
18581655 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaaattcc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
18581656 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacaccttcaaatatccaacttcc |
18581755 |
T |
|
| Q |
205 |
acaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctgctcc |
279 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18581756 |
acaacctacaaggcaatcgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctactcc |
18581830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 18581355 - 18581624
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581355 |
ctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
18581454 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaa-attc |
203 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | || |
|
|
| T |
18581455 |
ctcccatttctcaaatacctacaaatacccaacaaccccgctctacaatgaaacctacacatcatcttacatctaaaacaccttcaaatatccaacaatc |
18581554 |
T |
|
| Q |
204 |
cacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctct |
274 |
Q |
| |
|
| | | |||||| ||| || | |||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
18581555 |
c-ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctct |
18581624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 18581777 - 18581902
Alignment:
| Q |
25 |
acatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacct |
124 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||| |||||||||||| |
|
|
| T |
18581777 |
acatcatcccatatctcaaacatttacaaatttcccacctttcctctctactccaagtccacaaatgtctacaattcatgctctcacctctcaaatacct |
18581876 |
T |
|
| Q |
125 |
acaaatacccaacaaccccactctac |
150 |
Q |
| |
|
||||||| |||| ||||||||||| |
|
|
| T |
18581877 |
acaaatatccaatctccccactctac |
18581902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 18663284 - 18663010
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663284 |
ctatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
18663185 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaaattcc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
18663184 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacaccttcaaatatccaacttcc |
18663085 |
T |
|
| Q |
205 |
acaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctgctcc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18663084 |
acaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctactcc |
18663010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 18663485 - 18663216
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663485 |
ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
18663386 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaa-attc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| | || |
|
|
| T |
18663385 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaaaacaccttcaaatatccaacaatc |
18663286 |
T |
|
| Q |
204 |
cacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctct |
274 |
Q |
| |
|
| | | ||||| |||||| | |||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
18663285 |
c-ctatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctct |
18663216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 18663686 - 18663417
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663686 |
ctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
18663587 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaa-attc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | || |
|
|
| T |
18663586 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaaaacaccttcaaatatccaacaatc |
18663487 |
T |
|
| Q |
204 |
cacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctct |
274 |
Q |
| |
|
| | | |||||| ||| || | |||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
18663486 |
c-ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctct |
18663417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 18663063 - 18662938
Alignment:
| Q |
25 |
acatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacct |
124 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
18663063 |
acatcatcccatatctcaaacatttacaaatttcccacctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacct |
18662964 |
T |
|
| Q |
125 |
acaaatacccaacaaccccactctac |
150 |
Q |
| |
|
||||||| |||| ||||||||||| |
|
|
| T |
18662963 |
acaaatatccaatctccccactctac |
18662938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 37461232 - 37461501
Alignment:
| Q |
10 |
tacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctccc |
109 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37461232 |
tacaaagcatcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactttccatgctccc |
37461331 |
T |
|
| Q |
110 |
acttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaaattccacaac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
37461332 |
acttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacaccttcaaatatccaatttccacaac |
37461431 |
T |
|
| Q |
210 |
ctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctgctcc |
279 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37461432 |
ctacaaggcaactgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctactcc |
37461501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 36 - 274
Target Start/End: Original strand, 37461057 - 37461295
Alignment:
| Q |
36 |
tatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaataccca |
135 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37461057 |
tatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtctaatgtccatgctcccacttctcaaatacctacaaataccca |
37461156 |
T |
|
| Q |
136 |
acaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaa-attccacaacctacaaggcaaccgaaacatcatcc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||| | ||||| ||| || | ||||||||| |
|
|
| T |
37461157 |
acaaccccactctacaatgaaacctacacatcatcttacatctaaaacaccttcaaatatccaacaatcc-ttatttacaaagcatcctacacatcatcc |
37461255 |
T |
|
| Q |
235 |
catatctcaaacatttacaaatttcccacctttcctctct |
274 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
37461256 |
catatctcaaacacatacaaacttcccacctttcctctct |
37461295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 37461448 - 37461573
Alignment:
| Q |
25 |
acatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacct |
124 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
37461448 |
acatcatcccatatctcaaacatttacaaatttcccacctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacct |
37461547 |
T |
|
| Q |
125 |
acaaatacccaacaaccccactctac |
150 |
Q |
| |
|
||||||| |||| ||||||||||| |
|
|
| T |
37461548 |
acaaatatccaatctccccactctac |
37461573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 22569 - 22838
Alignment:
| Q |
10 |
tacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctccc |
109 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22569 |
tacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtctactttccatgctccc |
22668 |
T |
|
| Q |
110 |
acttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaaattccacaac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
22669 |
acttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacaccttcaaatatccaatttccacaac |
22768 |
T |
|
| Q |
210 |
ctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctgctcc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
22769 |
ctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttgctctctactcc |
22838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 22785 - 22910
Alignment:
| Q |
25 |
acatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacct |
124 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
22785 |
acatcatcccatatctcaaacatttacaaatttcccacctttgctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacct |
22884 |
T |
|
| Q |
125 |
acaaatacccaacaaccccactctac |
150 |
Q |
| |
|
||||||| |||| ||||||||||| |
|
|
| T |
22885 |
acaaatatccaatctccccactctac |
22910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 12923833 - 12924104
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||| ||||||||| ||||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923833 |
ctatttacaaagcaacctacacatcatccc---tctcaaaaaaatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
12923929 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaaattcc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
12923930 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacaccttcaaatatccaacttcc |
12924029 |
T |
|
| Q |
205 |
acaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctgctcc |
279 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12924030 |
acaacctacaaggcaactgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctctactcc |
12924104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 12923431 - 12923700
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12923431 |
ctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtctactatccatg |
12923530 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaa-attc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | || |
|
|
| T |
12923531 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaaaacaccttcaaatatccaacaatc |
12923630 |
T |
|
| Q |
204 |
cacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctct |
274 |
Q |
| |
|
| | | |||||| ||| || | |||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
12923631 |
c-ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctct |
12923700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 12923632 - 12923898
Alignment:
| Q |
5 |
ctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923632 |
ctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatg |
12923731 |
T |
|
| Q |
105 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaatgtccaa-attc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| | || |
|
|
| T |
12923732 |
ctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaaaacaccttcaaatatccaacaatc |
12923831 |
T |
|
| Q |
204 |
cacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttcccacctttcctctct |
274 |
Q |
| |
|
| | | ||||| |||||| | |||||||||| ||||||| | |||||| |||||||||||||||||| |
|
|
| T |
12923832 |
c-ctatttacaaagcaacctacacatcatccc---tctcaaaaaaatacaaacttcccacctttcctctct |
12923898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 12924051 - 12924176
Alignment:
| Q |
25 |
acatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacct |
124 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
12924051 |
acatcatcccatatctcaaacatttacaaatttcccacctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacct |
12924150 |
T |
|
| Q |
125 |
acaaatacccaacaaccccactctac |
150 |
Q |
| |
|
||| ||| |||| ||||||||||| |
|
|
| T |
12924151 |
acatatatccaatctccccactctac |
12924176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 19540801 - 19540742
Alignment:
| Q |
121 |
acctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaa |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||| ||||||| |||||||| |
|
|
| T |
19540801 |
acctacaaatacccaacaaccccactctacaaggcaacctacatatcatctcacatctaa |
19540742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 19540702 - 19540631
Alignment:
| Q |
121 |
acctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacaccttcaaat |
193 |
Q |
| |
|
||||||||||| | |||||| ||||||||||| |||| |||||||||||||||||||||| | |||||||||| |
|
|
| T |
19540702 |
acctacaaatatc-aacaacaccactctacaaggaaatctacacatcatcttacatctaaaataccttcaaat |
19540631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 19540619 - 19540503
Alignment:
| Q |
19 |
gcctacacatcatctcatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaa |
118 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||| || |||||||| || |||| |||||| |||||| |||||| | ||| || ||| |||| || |
|
|
| T |
19540619 |
gcctacacaccatctcgtatctcaaacaactacaactttataacctttccactttactccaagtcgacaaatttctactattcatact-ccatttctgaa |
19540521 |
T |
|
| Q |
119 |
atacctacaaatacccaa |
136 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
19540520 |
atacctacaaatatccaa |
19540503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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