View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679_low_15 (Length: 363)

Name: NF0679_low_15
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679_low_15
NF0679_low_15
[»] chr2 (3 HSPs)
chr2 (84-352)||(19173745-19174013)
chr2 (7-186)||(19173813-19173988)
chr2 (1-84)||(19173813-19173892)
[»] scaffold0091 (2 HSPs)
scaffold0091 (89-135)||(7637-7683)
scaffold0091 (191-224)||(7650-7683)
[»] chr8 (5 HSPs)
chr8 (89-135)||(5228220-5228266)
chr8 (99-133)||(2046603-2046637)
chr8 (191-224)||(5228233-5228266)
chr8 (190-222)||(38264918-38264950)
chr8 (88-120)||(38264918-38264950)
[»] chr1 (1 HSPs)
chr1 (89-134)||(22882552-22882597)
[»] chr6 (3 HSPs)
chr6 (89-135)||(24101990-24102036)
chr6 (192-224)||(10769985-10770017)
chr6 (90-122)||(10769985-10770017)
[»] chr5 (4 HSPs)
chr5 (82-120)||(35069994-35070032)
chr5 (184-222)||(35069994-35070032)
chr5 (191-219)||(33267923-33267951)
chr5 (89-117)||(33267923-33267951)
[»] chr4 (1 HSPs)
chr4 (91-137)||(4790770-4790816)
[»] chr3 (4 HSPs)
chr3 (89-118)||(26643225-26643254)
chr3 (191-220)||(26643225-26643254)
chr3 (89-117)||(42252186-42252214)
chr3 (191-219)||(42252186-42252214)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 84 - 352
Target Start/End: Complemental strand, 19174013 - 19173745
Alignment:
Q  84 tgacttatgtagcaccgacacttcagattgaaggtgtattcagtgtctgacatgggtcagtatctgatactaatacatgtgatcaaattcaattattcta 183  Q
    |||||||||||||| ||| | ||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||  ||    
T  19174013 tgacttatgtagcaacgatatttttgattgaaggtgtattcagtgtctgacatgtgtcagtatctgatactaatacatgcaatcaaattcaattatatta 19173914  T
Q  184 tttgacttatgtagcaccgacacttcagattgaaggtgtattcaatgtttgacatgggtcaatatctgatactaatatggtcaaattcaattattctatt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  19173913 tttgacttatgtagcaccgacacttcagattgaaggtgtattcagtgtctgacatgggtcagtatctgatattaatatggtcaaattcaattattctatt 19173814  T
Q  284 tatcaaattattactagtatcaacatgtcaatatcatgttaggtattcgtatttgtatcggtttttcat 352  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19173813 tatcaaattattactagtgtcaacatgtcaatatcatgttaggtattcgtatttgtatcggtttttcat 19173745  T

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Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 19173988 - 19173813
Alignment:
Q  7 gattgaaggtgtattcagtgtctgacatgggtcagtatctgatactaatacatgtgatcaaattcaattattctatttgacttatgtagcaccgacactt 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||    
T  19173988 gattgaaggtgtattcagtgtctgacatgtgtcagtatctgatactaatacatgcaatcaaattcaattatattatttgacttatgtagcaccgacactt 19173889  T
Q  107 cagattgaaggtgtattcagtgtctgacatgggtcagtatctgatactaatacatgtgatcaaattcaattattctattt 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    || |||||||||||||||||||||    
T  19173888 cagattgaaggtgtattcagtgtctgacatgggtcagtatctgatattaata----tggtcaaattcaattattctattt 19173813  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19173892 - 19173813
Alignment:
Q  1 acttcagattgaaggtgtattcagtgtctgacatgggtcagtatctgatactaatacatgtgatcaaattcaattattctattt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    || |||||||||||||||||||||    
T  19173892 acttcagattgaaggtgtattcagtgtctgacatgggtcagtatctgatattaata----tggtcaaattcaattattctattt 19173813  T

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Target: scaffold0091 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 7683 - 7637
Alignment:
Q  89 tatgtagcaccgacacttcagattgaaggtgtattcagtgtctgaca 135  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  7683 tatgtagcaccgacacttcagattgaaggcgtatccagtgtccgaca 7637  T

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Target: scaffold0091; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 7683 - 7650
Alignment:
Q  191 tatgtagcaccgacacttcagattgaaggtgtat 224  Q
    ||||||||||||||||||||||||||||| ||||    
T  7683 tatgtagcaccgacacttcagattgaaggcgtat 7650  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 5228266 - 5228220
Alignment:
Q  89 tatgtagcaccgacacttcagattgaaggtgtattcagtgtctgaca 135  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  5228266 tatgtagcaccgacacttcagattgaaggcgtatccagtgtccgaca 5228220  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 2046603 - 2046637
Alignment:
Q  99 cgacacttcagattgaaggtgtattcagtgtctga 133  Q
    |||||||||||||||||||||| ||||||||||||    
T  2046603 cgacacttcagattgaaggtgtcttcagtgtctga 2046637  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 5228266 - 5228233
Alignment:
Q  191 tatgtagcaccgacacttcagattgaaggtgtat 224  Q
    ||||||||||||||||||||||||||||| ||||    
T  5228266 tatgtagcaccgacacttcagattgaaggcgtat 5228233  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 38264950 - 38264918
Alignment:
Q  190 ttatgtagcaccgacacttcagattgaaggtgt 222  Q
    ||||||||||||||||||||||| |||||||||    
T  38264950 ttatgtagcaccgacacttcagaatgaaggtgt 38264918  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 38264950 - 38264918
Alignment:
Q  88 ttatgtagcaccgacacttcagattgaaggtgt 120  Q
    ||||||||||||||||||||||| |||||||||    
T  38264950 ttatgtagcaccgacacttcagaatgaaggtgt 38264918  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 22882552 - 22882597
Alignment:
Q  89 tatgtagcaccgacacttcagattgaaggtgtattcagtgtctgac 134  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  22882552 tatgtggcaccgacacttcaaattgaaggtgtgttcagtgtctgac 22882597  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 24101990 - 24102036
Alignment:
Q  89 tatgtagcaccgacacttcagattgaaggtgtattcagtgtctgaca 135  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||    
T  24101990 tatgtagcacctacacttcagattgaaggtgtgcacagtgtctgaca 24102036  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 10770017 - 10769985
Alignment:
Q  192 atgtagcaccgacacttcagattgaaggtgtat 224  Q
    ||||||||||||||||||| |||||||||||||    
T  10770017 atgtagcaccgacacttcatattgaaggtgtat 10769985  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 10770017 - 10769985
Alignment:
Q  90 atgtagcaccgacacttcagattgaaggtgtat 122  Q
    ||||||||||||||||||| |||||||||||||    
T  10770017 atgtagcaccgacacttcatattgaaggtgtat 10769985  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 35069994 - 35070032
Alignment:
Q  82 tttgacttatgtagcaccgacacttcagattgaaggtgt 120  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  35069994 tttgacctatgtagcaccgacacttctgattgaaggtgt 35070032  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 35069994 - 35070032
Alignment:
Q  184 tttgacttatgtagcaccgacacttcagattgaaggtgt 222  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  35069994 tttgacctatgtagcaccgacacttctgattgaaggtgt 35070032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 33267951 - 33267923
Alignment:
Q  191 tatgtagcaccgacacttcagattgaagg 219  Q
    |||||||||||||||||||||||||||||    
T  33267951 tatgtagcaccgacacttcagattgaagg 33267923  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 33267951 - 33267923
Alignment:
Q  89 tatgtagcaccgacacttcagattgaagg 117  Q
    |||||||||||||||||||||||||||||    
T  33267951 tatgtagcaccgacacttcagattgaagg 33267923  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 4790816 - 4790770
Alignment:
Q  91 tgtagcaccgacacttcagattgaaggtgtattcagtgtctgacatg 137  Q
    ||||||||||||||||| |||||||||||| ||| |||||| |||||    
T  4790816 tgtagcaccgacacttctgattgaaggtgtgttcggtgtcttacatg 4790770  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 26643225 - 26643254
Alignment:
Q  89 tatgtagcaccgacacttcagattgaaggt 118  Q
    ||||||||||||||||||||||||||||||    
T  26643225 tatgtagcaccgacacttcagattgaaggt 26643254  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 26643225 - 26643254
Alignment:
Q  191 tatgtagcaccgacacttcagattgaaggt 220  Q
    ||||||||||||||||||||||||||||||    
T  26643225 tatgtagcaccgacacttcagattgaaggt 26643254  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 42252186 - 42252214
Alignment:
Q  89 tatgtagcaccgacacttcagattgaagg 117  Q
    |||||||||||||||||||||||||||||    
T  42252186 tatgtagcaccgacacttcagattgaagg 42252214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 42252186 - 42252214
Alignment:
Q  191 tatgtagcaccgacacttcagattgaagg 219  Q
    |||||||||||||||||||||||||||||    
T  42252186 tatgtagcaccgacacttcagattgaagg 42252214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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