View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679_low_18 (Length: 327)

Name: NF0679_low_18
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679_low_18
NF0679_low_18
[»] chr4 (27 HSPs)
chr4 (11-327)||(312449-312767)
chr4 (11-327)||(6552273-6552593)
chr4 (125-327)||(38932620-38932823)
chr4 (149-327)||(26499289-26499467)
chr4 (180-327)||(47097342-47097489)
chr4 (231-327)||(6552897-6552993)
chr4 (193-327)||(48827963-48828097)
chr4 (141-327)||(51150940-51151126)
chr4 (156-295)||(45615619-45615758)
chr4 (124-324)||(56095123-56095323)
chr4 (193-295)||(7616903-7617005)
chr4 (255-327)||(11839868-11839940)
chr4 (127-289)||(35255419-35255582)
chr4 (252-327)||(13834427-13834502)
chr4 (251-316)||(38080866-38080931)
chr4 (255-308)||(48973337-48973390)
chr4 (141-248)||(1758463-1758570)
chr4 (255-326)||(39331100-39331171)
chr4 (164-327)||(8755812-8755970)
chr4 (249-327)||(31903351-31903429)
chr4 (259-327)||(17381488-17381556)
chr4 (255-302)||(8170895-8170942)
chr4 (257-295)||(36409656-36409694)
chr4 (257-295)||(36423822-36423860)
chr4 (257-302)||(971968-972013)
chr4 (63-115)||(38932551-38932604)
chr4 (263-327)||(4161825-4161889)
[»] chr8 (11 HSPs)
chr8 (11-327)||(36754667-36754984)
chr8 (11-115)||(41528704-41528808)
chr8 (157-327)||(33590110-33590280)
chr8 (158-327)||(1249113-1249283)
chr8 (217-327)||(41303046-41303157)
chr8 (11-58)||(16221618-16221665)
chr8 (268-327)||(21602123-21602182)
chr8 (250-308)||(21600521-21600579)
chr8 (259-314)||(33508620-33508675)
chr8 (249-295)||(42659935-42659981)
chr8 (255-308)||(24018018-24018071)
[»] scaffold0211 (1 HSPs)
scaffold0211 (11-327)||(20084-20405)
[»] chr5 (18 HSPs)
chr5 (11-327)||(9023102-9023424)
chr5 (149-316)||(27769881-27770048)
chr5 (149-273)||(28903780-28903904)
chr5 (149-273)||(28940175-28940299)
chr5 (247-324)||(11497952-11498029)
chr5 (255-308)||(26675123-26675175)
chr5 (255-308)||(26946731-26946783)
chr5 (259-295)||(37853360-37853396)
chr5 (255-302)||(14460086-14460133)
chr5 (7-46)||(25545767-25545806)
chr5 (230-324)||(11505291-11505385)
chr5 (230-324)||(11512685-11512779)
chr5 (230-324)||(11520061-11520155)
chr5 (230-324)||(11527469-11527563)
chr5 (259-308)||(8206231-8206280)
chr5 (255-308)||(27001235-27001288)
chr5 (255-327)||(7313984-7314056)
chr5 (248-316)||(11534893-11534961)
[»] chr3 (14 HSPs)
chr3 (11-327)||(50239627-50239943)
chr3 (149-327)||(7672347-7672521)
chr3 (165-290)||(43838465-43838589)
chr3 (255-326)||(30843640-30843711)
chr3 (259-306)||(3941666-3941713)
chr3 (255-327)||(46008625-46008697)
chr3 (255-326)||(23195656-23195727)
chr3 (259-308)||(26499839-26499888)
chr3 (254-303)||(37852904-37852953)
chr3 (268-308)||(12832220-12832260)
chr3 (256-308)||(14194858-14194910)
chr3 (255-327)||(14984506-14984578)
chr3 (255-327)||(34979110-34979182)
chr3 (148-244)||(40618882-40618978)
[»] scaffold0284 (1 HSPs)
scaffold0284 (11-327)||(2467-2772)
[»] scaffold0114 (1 HSPs)
scaffold0114 (11-327)||(34786-35097)
[»] chr1 (17 HSPs)
chr1 (123-327)||(49880031-49880235)
chr1 (208-327)||(45919850-45919969)
chr1 (149-327)||(40872645-40872820)
chr1 (180-327)||(9890620-9890763)
chr1 (63-174)||(45919965-45920080)
chr1 (180-295)||(31738321-31738435)
chr1 (149-273)||(16658227-16658351)
chr1 (164-327)||(27463750-27463913)
chr1 (63-115)||(49879925-49879977)
chr1 (153-212)||(47921820-47921879)
chr1 (193-316)||(52361954-52362077)
chr1 (193-295)||(8069009-8069110)
chr1 (255-314)||(6541117-6541176)
chr1 (255-295)||(34826996-34827036)
chr1 (11-58)||(49878358-49878405)
chr1 (262-302)||(33747858-33747898)
chr1 (256-308)||(38267346-38267398)
[»] chr2 (10 HSPs)
chr2 (149-327)||(31967468-31967646)
chr2 (123-327)||(41746426-41746631)
chr2 (173-327)||(7165664-7165818)
chr2 (257-327)||(40124364-40124434)
chr2 (149-244)||(9471794-9471889)
chr2 (193-325)||(17742516-17742647)
chr2 (255-308)||(8940071-8940124)
chr2 (79-115)||(41746690-41746727)
chr2 (255-295)||(12676513-12676553)
chr2 (259-327)||(15301525-15301593)
[»] chr6 (11 HSPs)
chr6 (154-316)||(21237172-21237334)
chr6 (149-327)||(6524854-6525026)
chr6 (149-327)||(26293379-26293557)
chr6 (173-327)||(25084937-25085091)
chr6 (249-326)||(9307392-9307469)
chr6 (255-327)||(16431591-16431663)
chr6 (11-58)||(14211349-14211396)
chr6 (255-324)||(31142019-31142088)
chr6 (255-298)||(29927657-29927700)
chr6 (259-327)||(10067659-10067727)
chr6 (263-327)||(21021035-21021099)
[»] chr7 (19 HSPs)
chr7 (76-327)||(8062791-8063039)
chr7 (220-316)||(5197982-5198078)
chr7 (158-316)||(25688974-25689130)
chr7 (200-326)||(18942839-18942965)
chr7 (193-327)||(27080855-27080989)
chr7 (193-327)||(27197312-27197446)
chr7 (149-308)||(30839838-30839997)
chr7 (149-295)||(1247508-1247652)
chr7 (67-153)||(7945245-7945334)
chr7 (193-327)||(8929505-8929639)
chr7 (149-327)||(38838565-38838742)
chr7 (259-327)||(5362344-5362412)
chr7 (255-327)||(40355004-40355076)
chr7 (255-308)||(1344462-1344515)
chr7 (259-311)||(3116911-3116963)
chr7 (259-295)||(32996369-32996405)
chr7 (11-58)||(7944902-7944949)
chr7 (149-212)||(18942747-18942810)
chr7 (78-107)||(3045245-3045274)
[»] scaffold0252 (1 HSPs)
scaffold0252 (149-327)||(17189-17365)
[»] scaffold0008 (5 HSPs)
scaffold0008 (149-209)||(80275-80335)
scaffold0008 (149-209)||(80768-80828)
scaffold0008 (149-209)||(81261-81321)
scaffold0008 (149-209)||(81754-81814)
scaffold0008 (149-209)||(82247-82307)
[»] scaffold0045 (1 HSPs)
scaffold0045 (271-308)||(20654-20691)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 312449 - 312767
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaatcaatggcggatctatgttagggctatgtggggctaaagccccacatgccctt 110  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||| |  || |||||||||||||| ||||||||||||||||||||||||||||||    
T  312449 cacagatattgtgtcaagtgttagtaaaaatttcactttgtatgaaatgaggggtggatctatgttagg-ctatgtggggctaaagccccacatgccctt 312547  T
Q  111 ccctannnnnnnat--atattataaaaatggcaatagttatttgg-tccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattcta 207  Q
    |||||       ||  ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  312548 ccctatttttttatgtatattataaaaatggtaatagttattttgatccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattata 312647  T
Q  208 aaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatt 307  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  312648 aaataatacatgattttgtactttattagtcataataatccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatt 312747  T
Q  308 tgaatgttatggactatttt 327  Q
    ||||||||| ||||||||||    
T  312748 tgaatgttagggactatttt 312767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 6552273 - 6552593
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaatcaatggcggatctatgttagggctatgtggggctaaagccccacatgccctt 110  Q
    |||||||||| ||||||||||  ||||||||||||||||| |||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  6552273 cacagatattgtgtcaagtgtttgtaaaaatttcactttgtatgaaa-catgggcggatctatgttagggctttgtggggctaaagccccacatgccctt 6552371  T
Q  111 ccctannnnnnn----atatattataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattc 205  Q
    |||||           ||||||||||||||| | ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6552372 ccctatttttttttatatatattataaaaattgtaatagttattttggtccgtgaatatgtaataaataatcataataatctctcagtgtattaaaattc 6552471  T
Q  206 taaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagta 305  Q
    ||||||||| |||||||||||| ||||||||||||||||  || ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  6552472 taaaataatccatgattttgtactttgttagtcataataggccttgaagtgacaataaataagtatattgaaggactaatgtgacaatatcaatgaagta 6552571  T
Q  306 tttgaatgttatggactatttt 327  Q
    ||||||||||| ||||||||||    
T  6552572 tttgaatgttagggactatttt 6552593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 125 - 327
Target Start/End: Original strand, 38932620 - 38932823
Alignment:
Q  125 atattataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattt 223  Q
    |||||||||||| || |||||| |||| ||| | ||||| |||||||||||||||||||| | | ||| |||||||||||| ||||||| | ||||||||    
T  38932620 atattataaaaagggtaatagtcatttcggttcgtgaatgtgtaataaatagtcataatagtgtttcaatgtattaaaattttaaaatagtccatgattt 38932719  T
Q  224 tgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggacta 323  Q
    ||||  ||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||  |||||    
T  38932720 tgtacattgttagtcataatagtctctgaagtgacaataaataagtatattgaaggactaatatgacaatattaatgaaatattttaatgttagagacta 38932819  T
Q  324 tttt 327  Q
    ||||    
T  38932820 tttt 38932823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 149 - 327
Target Start/End: Original strand, 26499289 - 26499467
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||| ||||||| ||||| || |||||| |||||||||| | ||||||||||||||||||||||| |||||||| || ||||||||||| ||||   |    
T  26499289 tttggttcctgaatgtgtaaaaagtagtcacaataatctcttaatgtattaaaattctaaaataataaatgattttatactttgttagtcaaaatagctc 26499388  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
     |||| ||| ||| | || |||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  26499389 atgaaatgataattagtaagtatattgaatgactaatatgacaatattaatgaagtattttaatgttacggactatttt 26499467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 180 - 327
Target Start/End: Original strand, 47097342 - 47097489
Alignment:
Q  180 aataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaagg 279  Q
    |||| ||||||| |||||||||||| ||||||||| |||||||||||| ||||| |||||||  | || || || |||||||||||| ||||||| ||||    
T  47097342 aatagtctctcaatgtattaaaattttaaaataattcatgattttgtactttgtaagtcatagcagtctctaaactgacaataaataagtatattaaagg 47097441  T
Q  280 actaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||||||||||||||| ||| |||||||| | |||||  |||||||||    
T  47097442 actaatatgacaatattaataaagtattttagtgttaaagactatttt 47097489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 6552897 - 6552993
Alignment:
Q  231 tgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||||||||||||  || ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||  |||||||||    
T  6552897 tgttagtcataataggccttgaagtgacaataaataagtatattgaaggactaatgagacaatatcaatgaagtatttgaatgttagagactatttt 6552993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 193 - 327
Target Start/End: Original strand, 48827963 - 48828097
Alignment:
Q  193 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 292  Q
    |||||| ||||| ||||||| | | |||||||||| ||| |||||| ||||| |||||||||||||||||| || ||||||||||||  |||||||||||    
T  48827963 tgtatttaaattttaaaatagtccctgattttgtactttattagtcgtaatagtccctgaagtgacaataagtaagtatattgaagggttaatatgacaa 48828062  T
Q  293 tatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||| ||||| ||||||  || ||| ||||||||||    
T  48828063 tattaatgacgtatttttatattagggactatttt 48828097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 327
Target Start/End: Complemental strand, 51151126 - 51150940
Alignment:
Q  141 aatagttattt-ggtccctgaatatgtaataaatagtcataataa-tctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtc 238  Q
    ||||||||||| ||||| ||||| |||||  | |||||| ||||| ||||||| |||||||||||| ||||||| |   |||||||  | | |||| |||    
T  51151126 aatagttattttggtccttgaatgtgtaacgagtagtcacaataaatctctcaatgtattaaaattttaaaatagtctctgattttc-actctgttggtc 51151028  T
Q  239 ataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    | |||| ||||| |||||||||||| || ||||||||||| |||||||||||||||| ||  || ||||| ||||||| ||||||||||    
T  51151027 aaaatagtccct-aagtgacaataagtaagtatattgaagtactaatatgacaatattaacaaaatattttaatgttagggactatttt 51150940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 45615619 - 45615758
Alignment:
Q  156 cctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagt 255  Q
    ||||||| |||||| |||||||| || | ||| ||| |||||||||||| ||||||| |   |||||||| | ||| ||||||| |||| |   ||||||    
T  45615619 cctgaatgtgtaattaatagtcacaacagtctttcaatgtattaaaattttaaaatagtctctgattttgcactttattagtcaaaatagtttttgaagt 45615718  T
Q  256 gacaataaatatgtatattgaaggactaatatgacaatat 295  Q
    |||||||| || ||||||||||||||||| ||||||||||    
T  45615719 gacaataagtaagtatattgaaggactaaaatgacaatat 45615758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 324
Target Start/End: Complemental strand, 56095323 - 56095123
Alignment:
Q  124 tatattataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgatt 222  Q
    ||||||||||| | || |||| |||||| ||||||| ||| |||||  | |||||| |||| | ||||| |||||||||||| ||||||  |   |||||    
T  56095323 tatattataaatagggtaataattattttggtcccttaatgtgtaacgagtagtcacaatagtatctcattgtattaaaattttaaaattgtctctgatt 56095224  T
Q  223 ttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggact 322  Q
    ||| | ||||||||||| ||||  |  |||||||||||||| || ||||||| || ||||||||||||||||| ||  || ||||| ||||||| |||||    
T  56095223 ttgcactttgttagtcaaaataggct-tgaagtgacaataagtaagtatattaaaagactaatatgacaatattaacaaattattttaatgttagggact 56095125  T
Q  323 at 324  Q
    ||    
T  56095124 at 56095123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 7617005 - 7616903
Alignment:
Q  193 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 292  Q
    |||||||||||| ||||||| |   |||||||| | ||||||||||| |||| ||| | || |||||||||||| |||||||||| ||||||||||| ||    
T  7617005 tgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtccattaaatgacaataaataagtatattgaatgactaatatgataa 7616906  T
Q  293 tat 295  Q
    |||    
T  7616905 tat 7616903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 11839940 - 11839868
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||||||| || || ||||||||||||||||||||||||| || ||||||||| ||||| | ||||||||||    
T  11839940 tgacaataagtaagtgtattgaaggactaatatgacaatattaacgaagtattttaatgtcaaggactatttt 11839868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 289
Target Start/End: Complemental strand, 35255582 - 35255419
Alignment:
Q  127 attataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttg 225  Q
    |||||||| | || ||||||||||| ||||||| |||||||||  | |||||| |||| ||||||| |||||||||||| ||||||| ||  ||||||||    
T  35255582 attataaacagggtaatagttattttggtccctaaatatgtaacgagtagtcacaatagtctctcaatgtattaaaattttaaaatagtatctgattttg 35255483  T
Q  226 tattttgttagtcataataatccctgaagtgacaataaat-atgtatattgaaggactaatatga 289  Q
     | ||| ||||||| ||| |   ||||||||||||||| | | ||||||| || |||||||||||    
T  35255482 cactttattagtcaaaat-aggtctgaagtgacaataagtaaagtatattaaaagactaatatga 35255419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 13834502 - 13834427
Alignment:
Q  252 aagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||  || ||||| |||||||  |||||||||    
T  13834502 aagtgacaataagtaagtatattgaaggactaatatgacaatattaacaaattattttaatgttaaagactatttt 13834427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 38080866 - 38080931
Alignment:
Q  251 gaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 316  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||| ||  |||||||| |||||||    
T  38080866 gaagtgacaataaataagtatattgaagtactaatatgactatattaacaaagtattttaatgtta 38080931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 48973337 - 48973390
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||| ||||    
T  48973337 tgacaataagtaagtatattgaaggactaatatgacaatattaatgaagcattt 48973390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 1758570 - 1758463
Alignment:
Q  141 aatagttatttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcat 240  Q
    |||||||||||||||| ||||| | |||||| || ||| |||| ||||||| |||||||||||| ||| ||| |   |||||||  ||||| |||||||     
T  1758570 aatagttatttggtccttgaatgtttaataagtaatcacaatagtctctcaatgtattaaaattttaagatagtttctgatttttcattttattagtcaa 1758471  T
Q  241 aataatcc 248  Q
    ||||||||    
T  1758470 aataatcc 1758463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 39331100 - 39331171
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactattt 326  Q
    |||||||||||| |||||||||| |||| |||| ||||||| ||||||| |||| ||| | |||||||||||    
T  39331100 tgacaataaataagtatattgaaagactgatataacaatattaatgaagcattttaatatcatggactattt 39331171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 327
Target Start/End: Original strand, 8755812 - 8755970
Alignment:
Q  164 tgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataa 263  Q
    ||||| ||||||| | |||| ||||||| | ||||||| || ||||||| |   |||||||| ||||||||||||| |||| |   |||| ||| |||||    
T  8755812 tgtaacaaatagttaaaatagtctctcaatttattaaattt-taaaatagtttttgattttgcattttgttagtcaaaatagtatttgaaatgataataa 8755910  T
Q  264 atatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
        ||||||| ||||| |||||||||||||| || ||||||||| |||||||  |||||||||    
T  8755911 ----gtatattaaaggattaatatgacaatattaacgaagtattttaatgttagagactatttt 8755970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 31903429 - 31903351
Alignment:
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||| ||||||||| || ||||||||||||||| |||||||||||  |||||| ||||| || || |||||| |||||    
T  31903429 ctgaaatgacaataagtaagtatattgaaggactgatatgacaatactaatgaattattttaacgtcatggacaatttt 31903351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 17381488 - 17381556
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||| || |||||||||||||||||||||||||||| || ||| ||||| ||| | | ||||||||||    
T  17381488 aataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatatcaaggactatttt 17381556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 8170895 - 8170942
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaa 302  Q
    ||||||||| || ||||||||||| |||||||||||||||| ||||||    
T  8170895 tgacaataagtaagtatattgaagtactaatatgacaatattaatgaa 8170942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 36409656 - 36409694
Alignment:
Q  257 acaataaatatgtatattgaaggactaatatgacaatat 295  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  36409656 acaataagtaagtatattgaaggactaatatgacaatat 36409694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 36423822 - 36423860
Alignment:
Q  257 acaataaatatgtatattgaaggactaatatgacaatat 295  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  36423822 acaataagtaagtatattgaaggactaatatgacaatat 36423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 972013 - 971968
Alignment:
Q  257 acaataaatatgtatattgaaggactaatatgacaatatcaatgaa 302  Q
    ||||||| ||||||||||||| || |||||||||||||| ||||||    
T  972013 acaataagtatgtatattgaatgattaatatgacaatattaatgaa 971968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 38932551 - 38932604
Alignment:
Q  63 ggcggatctatgttagggctatgtggggctaaagccccacatgcc-cttcccta 115  Q
    |||||||||||   ||||| ||||||||||||||||||||||||| ||||||||    
T  38932551 ggcggatctattcaagggcaatgtggggctaaagccccacatgccacttcccta 38932604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 4161825 - 4161889
Alignment:
Q  263 aatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||| ||||||||||| |||||||||||||||| ||||||  |||| ||| | || |||||||||    
T  4161825 aataagtatattgaagaactaatatgacaatattaatgaaacattttaatatcatagactatttt 4161889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 36754984 - 36754667
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaatcaatggcggatctatgttagggctatgtggggctaaagccccacatgccctt 110  Q
    |||||||||  |||||||||| ||||||||||| |||||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||    
T  36754984 cacagatatcgtgtcaagtgttagtaaaaattttactttgtatgaaatcaaggacggatctatgttaggactatgtggggctaaagccccacatgccttt 36754885  T
Q  111 ccctannnnnnnatatattataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 209  Q
    | |||       ||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  36754884 cactatttttttatatattataaaaatggtaatagttattttggtccctgaacatgtaataaataatcataataatctctcagtgtattaaaattctaaa 36754785  T
Q  210 ataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttg 309  Q
    ||||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36754784 ataattcatgattttgtactttgttagtcataatagtccatgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttg 36754685  T
Q  310 aatgttatggactatttt 327  Q
    ||||||| |||| |||||    
T  36754684 aatgttagggaccatttt 36754667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 41528808 - 41528704
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaatcaatggcggatctatgttagggctatgtggggctaaagccccacatgccctt 110  Q
    |||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  41528808 cacagatattgtgtcaagtgttagtaaaaatttcactttgtatgaaatcaatggcggatctatgttaggactatgtggggctaaagccctacatgccctt 41528709  T
Q  111 cccta 115  Q
    |||||    
T  41528708 cccta 41528704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 327
Target Start/End: Original strand, 33590110 - 33590280
Alignment:
Q  157 ctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtg 256  Q
    ||||||||| || ||||| ||| |||| ||||||| |||||||||||| ||||||| | |||||||||| | |||||||||||  ||| ||  | |||||    
T  33590110 ctgaatatgcaacaaataatcacaatagtctctcaatgtattaaaattgtaaaatagttcatgattttgcactttgttagtcaatatagtcttttaagtg 33590209  T
Q  257 acaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||||| ||  |||||||||| |   |||||||||||| || ||||||||| ||||||| ||| ||||||    
T  33590210 acaataattaattatattgaagaatcgatatgacaatattaacgaagtattttaatgttagggattatttt 33590280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 327
Target Start/End: Original strand, 1249113 - 1249283
Alignment:
Q  158 tgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctg-aagtg 256  Q
    |||||||||||  |||| |||||||| ||||| | | |||||||||||||||||| | ||||||||||   ||||||||||| |||| ||| || |||||    
T  1249113 tgaatatgtaacgaataatcataatagtctcttaatctattaaaattctaaaatagttcatgattttgctctttgttagtcaaaatagtccttgaaagtg 1249212  T
Q  257 acaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||||| ||  |||||||||| ||| |||||||| ||| ||  || ||||| |||||||| || ||||||    
T  1249213 acaataagtaaatatattgaagtactgatatgacagtattaacaaaatattttaatgttatagattatttt 1249283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 327
Target Start/End: Original strand, 41303046 - 41303157
Alignment:
Q  217 atgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 316  Q
    ||||||||| | ||||||||||| ||||  ||||| ||||||||||| || ||||||| || ||||||||||||||||| ||  || ||||| |||||||    
T  41303046 atgattttgcactttgttagtcaaaatag-ccctggagtgacaataattaagtatattaaaagactaatatgacaatattaacaaattattttaatgtta 41303144  T
Q  317 t--ggactatttt 327  Q
    |  ||||||||||    
T  41303145 tcgggactatttt 41303157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 16221665 - 16221618
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaat 58  Q
    |||||||||| |||||||||| |||||||||||||||||| |||||||    
T  16221665 cacagatattgtgtcaagtgttagtaaaaatttcactttgtatgaaat 16221618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 21602123 - 21602182
Alignment:
Q  268 gtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||||||||||||||||||||||||||| || ||| ||||| ||||| | ||||||||||    
T  21602123 gtatattgaaggactaatatgacaatattaacgaattattttaatgtcagggactatttt 21602182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 21600579 - 21600521
Alignment:
Q  250 tgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    |||| ||||||||| || |||||||||||||| ||||||||||||| |||||| |||||    
T  21600579 tgaaatgacaataagtaagtatattgaaggacaaatatgacaatattaatgaaatattt 21600521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 33508620 - 33508675
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgt 314  Q
    ||||| || ||||||||||||||||||| || ||||| |||||||||||| |||||    
T  33508620 aataagtaagtatattgaaggactaatacgataatattaatgaagtattttaatgt 33508675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 42659981 - 42659935
Alignment:
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatat 295  Q
    |||| |||||||||| || |||||||||| |||||||||||||||||    
T  42659981 ctgatgtgacaataagtaagtatattgaatgactaatatgacaatat 42659935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 24018071 - 24018018
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    ||||||| | ||||||||||||| ||||||||||||||||| || ||| |||||    
T  24018071 tgacaattagtatgtatattgaatgactaatatgacaatattaacgaaatattt 24018018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 20405 - 20084
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaatcaatggcggatctatgttagggctatgtggggctaaagccccacatgccctt 110  Q
    |||||||||| |||||||||| |||||||||||||||||  |||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||    
T  20405 cacagatattgtgtcaagtgttagtaaaaatttcactttatatgaaatcaggggcggatctatgttagggctatgtggggctcaagccccacatgccctt 20306  T
Q  111 ccctannnnnnn---atatattataaaaatggcaatagtta--tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattc 205  Q
    |||||          |||||||| |||||||| |||||||   ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  20305 ccctattttttttatatatattagaaaaatggtaatagtttatttttgtccctgaatatgtaataaatagtcataatattatctcagtgtattaaaattc 20206  T
Q  206 taaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagta 305  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20205 taaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagta 20106  T
Q  306 tttgaatgttatggactatttt 327  Q
    |||||||||||  |||||||||    
T  20105 tttgaatgttagagactatttt 20084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 9023102 - 9023424
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaatcaatggcggatctatgttagggctatgtggggctaaagccccacatgccctt 110  Q
    |||| ||||| |||||||||| |||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  9023102 cacaaatattgtgtcaagtgttagtaaaaatttcactttgtatgaaatcaggggcggatctatgttagggctatgtggggctttagccccacatgccctt 9023201  T
Q  111 ccctannnnnnn-----atatattataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaatt 204  Q
    |||||            |||||||||| |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| | ||    
T  9023202 ccctattttttttatatatatattatataaatggtaatagttattttggtccctgaatatgtattaaatagtcataataatctcacagtgtattacactt 9023301  T
Q  205 ctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagt 304  Q
    |||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9023302 ctaaaataatccatgattttgtactttgttagttataatagtccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagt 9023401  T
Q  305 atttgaatgttatggactatttt 327  Q
    |||||||||||| ||||||||||    
T  9023402 atttgaatgttagggactatttt 9023424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 149 - 316
Target Start/End: Complemental strand, 27770048 - 27769881
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||| ||||| ||| |||||||||||||||||||| ||| ||| |||||||||||||||||||| | |||||||||||| ||| |||||||||||| ||     
T  27770048 tttgatccctaaatgtgtaataaatagtcataatagtctttcaatgtattaaaattctaaaatagtccatgattttgtacttttttagtcataatagtct 27769949  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 316  Q
     |||||||| ||||| || |||||||||||   |||||||||||||| ||| || ||||| |||||||    
T  27769948 ttgaagtgaaaataagtaagtatattgaagagttaatatgacaatattaataaaatattttaatgtta 27769881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 28903904 - 28903780
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||| ||| | ||||||||||| | |||||| ||||| | |||||||||||||||||||| | | |||||||||| |||||||||||||||| | |    
T  28903904 tttggtccgtgagtgtgtaataaatatttataatagtctcttaatgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagttc 28903805  T
Q  249 ctgaagtgacaataaatatgtatat 273  Q
     |||||||| ||||| || ||||||    
T  28903804 atgaagtgataataagtaagtatat 28903780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 28940299 - 28940175
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||| ||| | ||||||||||| | |||||| ||||| | |||||||||||||||||||| | | |||||||||| |||||||||||||||| | |    
T  28940299 tttggtccgtgagtgtgtaataaatatttataatagtctcttaatgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagttc 28940200  T
Q  249 ctgaagtgacaataaatatgtatat 273  Q
     |||||||| ||||| || ||||||    
T  28940199 atgaagtgataataagtaagtatat 28940175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 11497952 - 11498029
Alignment:
Q  247 ccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 324  Q
    ||||||||||||||||| || ||||||| || || |||||||||||||| ||  || ||||| ||||||| |||||||    
T  11497952 ccctgaagtgacaataagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgttagggactat 11498029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 26675175 - 26675123
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||| |||||    
T  26675175 tgacaataaataagtatattgaaggact-atatgacaatattaatgaaatattt 26675123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 26946783 - 26946731
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||| |||||    
T  26946783 tgacaataaataagtatattgaaggact-atatgacaatattaatgaaatattt 26946731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 37853396 - 37853360
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatat 295  Q
    |||||||||||||||||||||||||||| ||||||||    
T  37853396 aataaatatgtatattgaaggactaatacgacaatat 37853360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 14460086 - 14460133
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaa 302  Q
    ||||||||| ||  ||||||||||||||||||||||||||||| ||||    
T  14460086 tgacaataagtaaatatattgaaggactaatatgacaatatcagtgaa 14460133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 25545806 - 25545767
Alignment:
Q  7 ggagcacagatattatgtcaagtgtgagtaaaaatttcac 46  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  25545806 ggagcacaaatattgtgtcaagtgtgagtaaaaatttcac 25545767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 11505291 - 11505385
Alignment:
Q  230 ttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 324  Q
    |||||||||  ||||  ||||||||||||||||| || ||||||| || || ||||| |||||||| ||  || ||||| ||||||| |||||||    
T  11505291 ttgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactat 11505385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 11512685 - 11512779
Alignment:
Q  230 ttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 324  Q
    |||||||||  ||||  ||||||||||||||||| || ||||||| || || ||||| |||||||| ||  || ||||| ||||||| |||||||    
T  11512685 ttgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactat 11512779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 11520061 - 11520155
Alignment:
Q  230 ttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 324  Q
    |||||||||  ||||  ||||||||||||||||| || ||||||| || || ||||| |||||||| ||  || ||||| ||||||| |||||||    
T  11520061 ttgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactat 11520155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 11527469 - 11527563
Alignment:
Q  230 ttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 324  Q
    |||||||||  ||||  ||||||||||||||||| || ||||||| || || ||||| |||||||| ||  || ||||| ||||||| |||||||    
T  11527469 ttgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactat 11527563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 8206231 - 8206280
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    ||||| || ||||||||||||| |||||||||||||| |||||| |||||    
T  8206231 aataagtaagtatattgaaggattaatatgacaatattaatgaattattt 8206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 27001288 - 27001235
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    ||||||||| || ||||||||| ||  |||||||||||||| ||||||||||||    
T  27001288 tgacaataagtaagtatattgacggggtaatatgacaatattaatgaagtattt 27001235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 7314056 - 7313984
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||||||||||| ||||||| | |||| ||||||||||||| || ||| ||||| ||| | | ||||||||||    
T  7314056 tgacaataaataagtatattaagggaccaatatgacaatattaacgaaatatttaaatatgagggactatttt 7313984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 11534893 - 11534961
Alignment:
Q  248 cctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 316  Q
    |||||||||||||||| || ||||||| || || |||||||||||||| ||  || ||||| |||||||    
T  11534893 cctgaagtgacaataagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgtta 11534961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 50239627 - 50239943
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaatcaatggcggatctatgttagggctatgtggggctaaagccccacatgccctt 110  Q
    |||| ||||| |||||||||| |||||||||||||||||| |||||||||  || |||| ||||||||||||||||| ||||||||||||||||||||||    
T  50239627 cacaaatattgtgtcaagtgttagtaaaaatttcactttgtatgaaatcagcggtggatatatgttagggctatgtgaggctaaagccccacatgccctt 50239726  T
Q  111 ccctannnnnnnatatatt--ataaaaatggcaatagttatttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaa 208  Q
    |||||       ||||||   |||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50239727 ccctatttttctatatatatgataaaaatggtaatagttattttggtcctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaa 50239826  T
Q  209 aataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    |||||| |||| || |||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  50239827 aataatccatgtttatgtactttgttagttataatagtccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaattaagtattt 50239926  T
Q  309 gaatgttatggactatttt 327  Q
    ||||||  |||||||||||    
T  50239927 gaatgt--tggactatttt 50239943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 149 - 327
Target Start/End: Original strand, 7672347 - 7672521
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||| ||||| ||||||||||||| |||||||||| | | |||||||||||||||||||||| |||||||||||| |||||||||||||||| | |    
T  7672347 tttggtccttgaatgtgtaataaatagttataataatcttttaatgtattaaaattctaaaataattcatgattttgtactttgttagtcataatagt-c 7672445  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
     |||||||||||||| || |||||||||||  |||| ||||| ||||  ||||||||||| |||||||  |||||||||    
T  7672446 atgaagtgacaataagta-gtatattgaagagctaa-atgac-atattgatgaagtattttaatgttagagactatttt 7672521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 165 - 290
Target Start/End: Original strand, 43838465 - 43838589
Alignment:
Q  165 gtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaa 264  Q
    |||||||||||||||| || | ||||| |||||||||||| ||||||| |   |||||||||| |||||||||||||||| ||| ||||||||||||||     
T  43838465 gtaataaatagtcata-tagtatctcaatgtattaaaattttaaaatagtctttgattttgtactttgttagtcataatagtccatgaagtgacaataag 43838563  T
Q  265 tatgtatattgaaggactaatatgac 290  Q
    || |||||||||||| ||||||||||    
T  43838564 taagtatattgaagggctaatatgac 43838589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 30843711 - 30843640
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactattt 326  Q
    |||||||||||| |||||||||| ||||||||||||||||| ||||||| |||| ||  | |||||||||||    
T  30843711 tgacaataaataagtatattgaaagactaatatgacaatattaatgaagcattttaacatcatggactattt 30843640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 3941713 - 3941666
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtat 306  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||    
T  3941713 aataagtaggtatattgaaggactaatatgacaatattaatgaagtat 3941666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 46008697 - 46008625
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||||||||||| ||||||| || || |||||||||||||| || ||| ||||| |||||||  |||||||||    
T  46008697 tgacaataaataagtatattaaaagattaatatgacaatattaacgaattattttaatgttaaagactatttt 46008625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 23195656 - 23195727
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactattt 326  Q
    ||||||||| || |||||||||| ||||||||||||||||| || ||| || || ||||| || ||||||||    
T  23195656 tgacaataattaagtatattgaaagactaatatgacaatattaacgaaatactttaatgtcatagactattt 23195727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 26499888 - 26499839
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    |||||||| |||||||||| |||| |||||| ||||| ||||||||||||    
T  26499888 aataaataagtatattgaatgactgatatgaaaatattaatgaagtattt 26499839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 37852953 - 37852904
Alignment:
Q  254 gtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaag 303  Q
    ||||||||||||| ||||||| || ||||||||||||| ||| |||||||    
T  37852953 gtgacaataaataagtatattaaaagactaatatgacattattaatgaag 37852904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 12832220 - 12832260
Alignment:
Q  268 gtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    ||||||||||||||| |||||||||||| ||||||| ||||    
T  12832220 gtatattgaaggacttatatgacaatattaatgaagcattt 12832260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 14194858 - 14194910
Alignment:
Q  256 gacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    |||||||| || ||||||| || |||| |||||||||||| ||||||||||||    
T  14194858 gacaataactaagtatattaaatgactgatatgacaatattaatgaagtattt 14194910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 14984578 - 14984506
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||||||||  | ||||||||||||| |||||||||||||| || ||| ||||| ||||| | | ||||||||    
T  14984578 tgacaataagcaagtatattgaaggattaatatgacaatattaacgaaatattttaatgtcaggaactatttt 14984506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 34979110 - 34979182
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||||||| || |||||||||| ||||||||||| ||||| || ||| ||||| ||||| |  |||||||||    
T  34979110 tgacaataagtaagtatattgaatgactaatatgataatattaacgaaatattttaatgtgagagactatttt 34979182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 40618882 - 40618978
Alignment:
Q  148 atttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataata 244  Q
    ||||||||| |||||||||||| | |||||| |||| |||   | ||||| |||||| ||||||||| | ||||| || | ||||||||||| ||||    
T  40618882 atttggtccttgaatatgtaatgactagtcacaatagtcttcaaatgtatgaaaattttaaaataatccttgattgtgcaatttgttagtcaaaata 40618978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 2772 - 2467
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaatcaatggcggatctatgttagggctatgtggggctaaagccccacatgccctt 110  Q
    |||||||||| |||||||||| |||||||||||||||||| |||||||||  |||||||||||||           || |||||||||||||| ||||||    
T  2772 cacagatattgtgtcaagtgttagtaaaaatttcactttgtatgaaatcaggggcggatctatgt-----------ggagctaaagccccacacgccctt 2684  T
Q  111 ccctannnnnnnatatattataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 209  Q
    |||||       ||||||||||||||||| | ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2683 ccctattatat-atatattataaaaatggtagtagttattttggtctctgaatatgtaataaatattcataataatctctcagtgtattaaaattctaaa 2585  T
Q  210 ataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttg 309  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2584 ataatccatgattttgtactttgttagtcataataatccctgaagtgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttg 2485  T
Q  310 aatgttatggactatttt 327  Q
    ||||||| ||||||||||    
T  2484 aatgttagggactatttt 2467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 34786 - 35097
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaatcaatggcggatctatgttagggctatgtggggctaaagccccacatgccctt 110  Q
    |||| ||||| |||||||||| ||||||| |||||||||| |||||||||  |||||||||||||||||||||||||||||          |||||||||    
T  34786 cacaaatattgtgtcaagtgttagtaaaagtttcactttgtatgaaatcaggggcggatctatgttagggctatgtggggc----------catgccctt 34875  T
Q  111 ccctannnnnnn----atatattataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattc 205  Q
    |||||           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34876 ccctatttttttttatatatattataaaaatggtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattc 34975  T
Q  206 taaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagta 305  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  34976 taaaataatccatgattttgtactttgttagtcataatagtccctgaagtgataataaataagtatattgaaggactaatatgacaatatcaatgaagta 35075  T
Q  306 tttgaatgttatggactatttt 327  Q
    ||||||||||| ||||||||||    
T  35076 tttgaatgttagggactatttt 35097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 123 - 327
Target Start/End: Original strand, 49880031 - 49880235
Alignment:
Q  123 atatattataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgat 221  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  49880031 atatattataaaaatcgtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaa-ttctaaaataatccatgat 49880129  T
Q  222 tttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggac 321  Q
    |||||| |||||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  49880130 tttgtactttgttagtcataatagtccctgaagtgacaataagtaagtatattgaaagactaatatgacaatatcaatgaagtattttaatgttagggac 49880229  T
Q  322 tatttt 327  Q
    ||||||    
T  49880230 tatttt 49880235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 327
Target Start/End: Complemental strand, 45919969 - 45919850
Alignment:
Q  208 aaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatt 307  Q
    ||||||| |||||||||||| |||||||||||||||| ||||| |||||||||||| || ||||||||||||   |||||||||||||||||||||||||    
T  45919969 aaataattcatgattttgtactttgttagtcataatagtccctaaagtgacaataagtaagtatattgaagggtcaatatgacaatatcaatgaagtatt 45919870  T
Q  308 tgaatgttatggactatttt 327  Q
    | ||||||| ||| ||||||    
T  45919869 ttaatgttagggattatttt 45919850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 149 - 327
Target Start/End: Complemental strand, 40872820 - 40872645
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||||||||  |||||||||||||||||||| ||| ||| |||||||||||| ||| ||| | | |||||||||| ||||||||||   ||| |||    
T  40872820 tttggtccctgaacgtgtaataaatagtcataatagtctttcaatgtattaaaattttaatatagtccctgattttgtactttgttagtc---atagtcc 40872724  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
     |||||||||||||| || |||||||  ||| ||||||||||||||| ||| |||||||| ||||| | | ||||||||    
T  40872723 ttgaagtgacaataagtaagtatattatagggctaatatgacaatattaattaagtattttaatgtaacgaactatttt 40872645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 327
Target Start/End: Complemental strand, 9890763 - 9890620
Alignment:
Q  180 aataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaagg 279  Q
    |||| ||||||| ||||||||||||||||||||   |||||||||| | ||||||||||| |||| ||||| || |||||||||    ||||||||||||    
T  9890763 aatagtctctcaatgtattaaaattctaaaatagatcatgattttgcactttgttagtcaaaatagtcccttaaatgacaataa----gtatattgaagg 9890668  T
Q  280 actaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||||||||||||||| || ||||||||  ||||||| ||| ||||||    
T  9890667 actaatatgacaatattaacgaagtattctaatgttaaggattatttt 9890620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 45920080 - 45919965
Alignment:
Q  63 ggcggatctatgttagggctatgtggggctaaagccccacatgcccttcccta---nnnnnnnatatattataaaaatggcaatagtta-tttggtccct 158  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||          ||||||||||||||||| |||||||| ||||||||||    
T  45920080 ggcggatctatgttagagctatgtggggctaaatccccacatgcccttccctattttttttatatatattataaaaatggtaatagttattttggtccct 45919981  T
Q  159 gaatatgtaataaata 174  Q
    ||||||||||||||||    
T  45919980 gaatatgtaataaata 45919965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 31738435 - 31738321
Alignment:
Q  180 aataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaagg 279  Q
    |||||||||||| ||||||| |||| |||||||||   |||||||||| ||||||||||| |||| | ||||||||||||||||||| ||||||| || |    
T  31738435 aataatctctcaatgtattagaattttaaaataatttttgattttgtactttgttagtcaaaatagt-cctgaagtgacaataaataagtatattaaatg 31738337  T
Q  280 actaatatgacaatat 295  Q
    | ||||||||||||||    
T  31738336 attaatatgacaatat 31738321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 16658351 - 16658227
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||| ||| | ||||||||||| | |||||| ||||| | |||||||||||||||||||| | | |||||||||| |||||||||||||||| | |    
T  16658351 tttggtccgtgagtgtgtaataaatatttataatagtctcttaatgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagttc 16658252  T
Q  249 ctgaagtgacaataaatatgtatat 273  Q
     |||||||| ||||| || ||||||    
T  16658251 atgaagtgataataagtaagtatat 16658227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 164 - 327
Target Start/End: Original strand, 27463750 - 27463913
Alignment:
Q  164 tgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataa 263  Q
    |||||||| |||||| | || ||||||| |||||||||||||||||||| |   | |||||| | ||||||||||| |||| ||  |||| |||||||||    
T  27463750 tgtaataagtagtcacattattctctcaatgtattaaaattctaaaatagtctctaattttgcactttgttagtcaaaatagtctttgaaatgacaataa 27463849  T
Q  264 atatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
     || |||||||||| ||||||||| ||||||| ||  |||||||| || |||| | ||||||||    
T  27463850 gtaagtatattgaaagactaatataacaatattaacaaagtattttaacgttaggaactatttt 27463913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 49879925 - 49879977
Alignment:
Q  63 ggcggatctatgttagggctatgtggggctaaagccccacatgcccttcccta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49879925 ggcggatctatgttagggctatgtggggctaaagccccacatgctcttcccta 49879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 47921820 - 47921879
Alignment:
Q  153 gtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaata 212  Q
    |||||| ||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  47921820 gtccctaaatgtgtaataaatagtcataatagtctcttagtgtatcaaaattctaaaata 47921879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 52361954 - 52362077
Alignment:
Q  193 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 292  Q
    |||||||||||| ||||||| |   |||||||| | ||| ||| ||| |||||||  |||||||| |||||||| |||||| |||| |||||||||| ||    
T  52361954 tgtattaaaattttaaaatagtctctgattttgcactttattattcaaaataatcaatgaagtgataataaataagtatatcgaagaactaatatgataa 52362053  T
Q  293 tatcaatgaagtatttgaatgtta 316  Q
    ||| ||  |||||||| |||||||    
T  52362054 tattaacaaagtattttaatgtta 52362077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 295
Target Start/End: Original strand, 8069009 - 8069110
Alignment:
Q  193 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 292  Q
    |||||||||||||||||||| | |||||||||| | ||||||||||| || | | ||| || ||| ||||| || ||||||||| ||| |||||||||||    
T  8069009 tgtattaaaattctaaaatagttcatgattttgcactttgttagtca-aaaagttccttaaatgataataagtaagtatattgatggattaatatgacaa 8069107  T
Q  293 tat 295  Q
    |||    
T  8069108 tat 8069110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 6541176 - 6541117
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgt 314  Q
    ||||||||| || |||||||||||||||||||||||||||| || ||| ||||| |||||    
T  6541176 tgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatgt 6541117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 34826996 - 34827036
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatat 295  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  34826996 tgacaataaataagtatattgaatgactaatatgacaatat 34827036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 49878358 - 49878405
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaat 58  Q
    |||| ||||| |||||||||| |||||||||||||||||| |||||||    
T  49878358 cacaaatattgtgtcaagtgttagtaaaaatttcactttgtatgaaat 49878405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 33747858 - 33747898
Alignment:
Q  262 aaatatgtatattgaaggactaatatgacaatatcaatgaa 302  Q
    ||||| ||||||||||||| |||||||||||||| ||||||    
T  33747858 aaataagtatattgaaggattaatatgacaatattaatgaa 33747898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 38267346 - 38267398
Alignment:
Q  256 gacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    |||||||| ||  |||||||||||| |||||||||||||| ||||||| ||||    
T  38267346 gacaataagtaaatatattgaaggattaatatgacaatattaatgaagcattt 38267398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 149 - 327
Target Start/End: Complemental strand, 31967646 - 31967468
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| ||     
T  31967646 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaagaatccatgattttgtactttgttagtcataatagtct 31967547  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31967546 ctgaagtgacagtaaaaaagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactatttt 31967468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 123 - 327
Target Start/End: Complemental strand, 41746631 - 41746426
Alignment:
Q  123 atatattataaaaatggcaatagttattt-ggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgat 221  Q
    |||||||||||||| || ||||| ||||| |||| ||| || ||||| |||||||||||||| ||||||| |||||| ||||||||||||| | ||||||    
T  41746631 atatattataaaaaaggtaatagctattttggtctctggatgtgtaagaaatagtcataatagtctctcaatgtatttaaattctaaaatagttcatgat 41746532  T
Q  222 tttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggac 321  Q
    |||||| ||| |||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |||||||  |||    
T  41746531 tttgtacttttttagacataatagtccctgaagtgacaataaataagtatattgaagggctaatatgacaatattaatgaagtattttaatgttagagac 41746432  T
Q  322 tatttt 327  Q
    ||||||    
T  41746431 tatttt 41746426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 327
Target Start/End: Complemental strand, 7165818 - 7165664
Alignment:
Q  173 tagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtata 272  Q
    |||||| |||| ||| ||| |||||||||||| ||||||| |   |||||||| | ||| ||||| | |||| ||  |||||||||||||| || |||||    
T  7165818 tagtcacaatagtctttcaatgtattaaaattttaaaatagtctctgattttgcactttattagttaaaatagtctttgaagtgacaataagtaagtata 7165719  T
Q  273 ttgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||| ||||||||||| ||||| ||  || ||||| ||||||| ||||||||||    
T  7165718 ttgaaagactaatatgaaaatattaacaaattattttaatgttaaggactatttt 7165664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 40124434 - 40124364
Alignment:
Q  257 acaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||||| || |||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||    
T  40124434 acaataagtaagtatattgaagggctaatatgacaatattaatgaagtactttaatgttatggactatttt 40124364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 9471889 - 9471794
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataata 244  Q
    ||||||| |||||| |||||||||||||||||||| | | | | |||||||||||||||||||| |   || ||||||| ||||||||||||||||    
T  9471889 tttggtctctgaatgtgtaataaatagtcataatagttttttaatgtattaaaattctaaaatagtcattgtttttgtactttgttagtcataata 9471794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 325
Target Start/End: Original strand, 17742516 - 17742647
Alignment:
Q  193 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 292  Q
    |||||||||||| ||||||| |   |||||||| | ||||||||| | ||||  ||||||||||||||||| || ||||||| || ||||||||||||||    
T  17742516 tgtattaaaattttaaaatagtctctgattttgcactttgttagttaaaatag-ccctgaagtgacaataagtaagtatattaaaagactaatatgacaa 17742614  T
Q  293 tatcaatgaagtatttgaatgttatggactatt 325  Q
    ||| ||  || ||||| ||||||| | ||||||    
T  17742615 tattaacaaattatttaaatgttaggcactatt 17742647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 8940071 - 8940124
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    |||||| || ||||||||||||| ||||||||||||||||| ||| || |||||    
T  8940071 tgacaacaagtatgtatattgaatgactaatatgacaatattaattaaatattt 8940124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 41746727 - 41746690
Alignment:
Q  79 ggctatgtggggctaaagccccacatgcc-cttcccta 115  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  41746727 ggctatgtggggctaaagccccacatgccacttcccta 41746690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 12676553 - 12676513
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatat 295  Q
    |||||||| ||| ||||||||| ||||||||||||||||||    
T  12676553 tgacaatagataagtatattgagggactaatatgacaatat 12676513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 15301525 - 15301593
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||| || ||||||||||| ||||||| |||||||| || ||||||||| ||||| |  |||||||||    
T  15301525 aataagtaagtatattgaagtactaataagacaatattaacgaagtattttaatgtcagagactatttt 15301593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 154 - 316
Target Start/End: Original strand, 21237172 - 21237334
Alignment:
Q  154 tccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaa 253  Q
    ||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||| | | ||| |||||| ||| |||||||||||| |||||| |    
T  21237172 tccctgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtccctgagtttgtactttattagtcataatagtccctgga 21237271  T
Q  254 gtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 316  Q
    |||||||||| || |||||||||| | ||||||||||||| | |||||||||||| |||||||    
T  21237272 gtgacaataactaagtatattgaacggctaatatgacaatgttaatgaagtattttaatgtta 21237334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 149 - 327
Target Start/End: Original strand, 6524854 - 6525026
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||| ||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||| | | |||||||||| |||||| ||  || |    |    
T  6524854 tttggtccatgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtccctgattttgtactttgtttgt--tagt----c 6524947  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
     | |||||| ||||| ||  ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  6524948 ataaagtgagaataagtaaatatattgaaggactaatatgacaatattaatgaagtattttaatgttacggactatttt 6525026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 327
Target Start/End: Original strand, 26293379 - 26293557
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||||| ||| ||||| || ||  || |||||||| | | | |||||||||||||||||| | |||||||||||| ||||||||||| ||||        
T  26293379 tttggtccctaaatgtgtaacaagtaaccacaataatcttttaatatattaaaattctaaaatagtccatgattttgtactttgttagtcaaaatagcat 26293478  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
     | |||||||||||| ||||||||||||| ||||||||||| ||||| ||  |||||||| ||||||| ||||||||||    
T  26293479 ttaaagtgacaataagtatgtatattgaatgactaatatgataatattaacaaagtattttaatgttaaggactatttt 26293557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 327
Target Start/End: Original strand, 25084937 - 25085091
Alignment:
Q  173 tagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtata 272  Q
    |||| |||||| ||||| | |||||||||||| | ||||| |   | |||||| ||||| ||| ||| |||||||  |||||||| ||||| || |||||    
T  25084937 tagttataatagtctcttaatgtattaaaatttttaaatagtctttaattttgcattttattaatcaaaataatctttgaagtgaaaataagtaagtata 25085036  T
Q  273 ttgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||| || |||||||||||||| ||  || ||||| |||||||  |||||||||    
T  25085037 ttgaaagaataatatgacaatattaacaaattattttaatgttaaagactatttt 25085091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 9307392 - 9307469
Alignment:
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactattt 326  Q
    ||||| ||| ||||| || |||||||||||||||||||||||||| | |||||| ||||| ||||| | |||||||||    
T  9307392 ctgaaatgaaaataagtaagtatattgaaggactaatatgacaatgttaatgaattattttaatgtcagggactattt 9307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 16431591 - 16431663
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||||||| || |||||||||| ||||||||||||||||| | |||| ||||| |||||||  |||||||||    
T  16431591 tgacaataagtaagtatattgaatgactaatatgacaatattagtgaattattttaatgttagagactatttt 16431663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 14211396 - 14211349
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaat 58  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||||    
T  14211396 cacatatattatgtcaagtgttagtaaaaatttcactttgtatgaaat 14211349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 31142088 - 31142019
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactat 324  Q
    ||||||||| ||  |||||||||| ||| |||||||||||| |||||||||||| ||| | |||||||||    
T  31142088 tgacaataagtaaatatattgaagtactgatatgacaatattaatgaagtattttaatatcatggactat 31142019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 29927657 - 29927700
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaa 298  Q
    |||||||||||| || |||||||| |||||||||||||||||||    
T  29927657 tgacaataaataagtttattgaagaactaatatgacaatatcaa 29927700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 10067659 - 10067727
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||| || |||||||||| ||||||||||||||||| ||  |||||||| ||||| |  |||||||||    
T  10067659 aataagtaagtatattgaatgactaatatgacaatattaacaaagtattttaatgtcagagactatttt 10067727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 21021035 - 21021099
Alignment:
Q  263 aatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||| |||||||||||||||||||||| ||||  || ||| ||||| |||||||  |||||||||    
T  21021035 aataagtatattgaaggactaatatgataataataacgaaatattttaatgttaatgactatttt 21021099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 327
Target Start/End: Complemental strand, 8063039 - 8062791
Alignment:
Q  76 tagggctatgtggggctaaagccccacatgcc-cttccctannnnnnnatatattataaaaatggcaatagttattt-ggtccctgaatatgtaataaat 173  Q
    ||||||||||||||||||||||||||||| |  ||||||||        | ||| ||||| |||| ||||||||||| ||||| ||||| |||||  | |    
T  8063039 tagggctatgtggggctaaagccccacatccaacttccctatttttt--tttatcataaatatggtaatagttattttggtccttgaatgtgtaacgagt 8062942  T
Q  174 agtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatat 273  Q
    ||||| |||| ||| ||| |||||||||||| ||||||| ||  |||||||| | |||  |||||| ||||| || |||||||||||| | || ||||||    
T  8062941 agtcacaatagtctgtcaatgtattaaaattttaaaatagtatctgattttgcacttt--tagtcaaaataa-ccttgaagtgacaatgagtaagtatat 8062845  T
Q  274 tgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    | || ||||||||||||||||| ||  || ||||| ||||||||||||||||||    
T  8062844 taaaagactaatatgacaatattaacaaattattttaatgttatggactatttt 8062791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 220 - 316
Target Start/End: Original strand, 5197982 - 5198078
Alignment:
Q  220 attttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 316  Q
    |||||| | ||||||||||| |||| |||||||||  |||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  5197982 attttgcactttgttagtcaaaatagtccctgaagcaacaataaataagtatattgaaagactaatatgacaatattaatgaagtattttaatgtta 5198078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 316
Target Start/End: Original strand, 25688974 - 25689130
Alignment:
Q  158 tgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtga 257  Q
    ||||| |||||| |||| ||| |||| ||||||| ||||||||||||||||||||||   |||||||| | ||||||||| | |||| ||||| || |||    
T  25688974 tgaatgtgtaatgaataatcacaatagtctctcaatgtattaaaattctaaaataatttctgattttgcactttgttagttaaaatagtcccttaaatga 25689073  T
Q  258 caataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgtta 316  Q
     ||||| || ||||||| || |  |||||||||||||| || ||||||||  |||||||    
T  25689074 taataagtaagtatatttaatg--taatatgacaatattaacgaagtattctaatgtta 25689130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 18942965 - 18942839
Alignment:
Q  200 aaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaat 299  Q
    ||||||||||||| |   |||||||| ||||| ||| ||| |||||||| |||| ||||||||| || |||||||||| || |||||||||||||| ||     
T  18942965 aaattctaaaatagtctctgattttgcattttattaatcaaaataatccatgaaatgacaataagtaagtatattgaatgattaatatgacaatattaac 18942866  T
Q  300 gaagtatttgaatgttatggactattt 326  Q
    || |||||| |||||||  ||||||||    
T  18942865 gacgtattttaatgttagagactattt 18942839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 327
Target Start/End: Complemental strand, 27080989 - 27080855
Alignment:
Q  193 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 292  Q
    ||||||||||||||||||||     |||||||  | ||||||| ||| |||| ||| |||||||| ||||| || ||||  ||||||| |||||||| ||    
T  27080989 tgtattaaaattctaaaatagactttgatttttcactttgttattcaaaatagtccttgaagtgataataagtaagtatgctgaaggattaatatgataa 27080890  T
Q  293 tatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||| || ||||||||| ||||||||||||||||||    
T  27080889 tattaaagaagtattttaatgttatggactatttt 27080855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 327
Target Start/End: Original strand, 27197312 - 27197446
Alignment:
Q  193 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 292  Q
    ||||||||||||||||||||     |||||||  | ||||||| ||| |||| ||| |||||||| ||||| || ||||  ||||||| |||||||| ||    
T  27197312 tgtattaaaattctaaaatagactttgatttttcactttgttattcaaaatagtccttgaagtgataataagtaagtatgctgaaggattaatatgataa 27197411  T
Q  293 tatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||| || ||||||||| ||||||||||||||||||    
T  27197412 tattaaagaagtattttaatgttatggactatttt 27197446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 308
Target Start/End: Complemental strand, 30839997 - 30839838
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||||||||| | |||  |||||| | |||| ||||||| |||| || || | ||||||| | | |||||||  ||||| ||||| | |||| ||     
T  30839997 tttggtccctgaatgtataacgaatagttacaatagtctctcaatgtaatataaatttaaaatagtccctgattttaaattttattagttaaaatagtct 30839898  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    || || ||| |||||||| ||||| |||||||||||||||||||| | || |||||||||    
T  30839897 ctaaaatgataataaataagtatactgaaggactaatatgacaatgttaacgaagtattt 30839838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 295
Target Start/End: Original strand, 1247508 - 1247652
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    ||||||||||||||||||||  | |||||| |||| | ||| | |||||||||||| ||||||| | | ||||||||   |||| || ||| ||||  ||    
T  1247508 tttggtccctgaatatgtaacgagtagtcacaatagtttcttaatgtattaaaattttaaaatagt-cttgattttgcgctttgctaatcaaaatag-cc 1247605  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatat 295  Q
    ||||||||||||  | |||||||||| || |||||||||||||||||    
T  1247606 ctgaagtgacaactagtatgtatattaaaagactaatatgacaatat 1247652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 7945245 - 7945334
Alignment:
Q  67 gatctatgttagggctatgtggggctaaagccccacatgcccttcccta---nnnnnnnatatattataaaaatggcaatagttatttgg 153  Q
    ||||||||||||||||||||||||||||| |||| |||| |||||||||          ||||||||||||||||| |||||||||||||    
T  7945245 gatctatgttagggctatgtggggctaaacccccgcatgtccttccctatttttttaaaatatattataaaaatggtaatagttatttgg 7945334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 327
Target Start/End: Original strand, 8929505 - 8929639
Alignment:
Q  193 tgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatccctgaagtgacaataaatatgtatattgaaggactaatatgacaa 292  Q
    |||||||||||| ||||||| |   |||||||| | ||||||||||| |||| ||| | || ||||| |||||| ||||| |||| ||||||| ||| ||    
T  8929505 tgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtccattaaatgacagtaaataagtatactgaatgactaatttgataa 8929604  T
Q  293 tatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||| || ||||||||  ||||||| ||| ||||||    
T  8929605 tattaacgaagtattctaatgttaaggattatttt 8929639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 327
Target Start/End: Complemental strand, 38838742 - 38838565
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||||||||| |||||  | |||||| |||| ||| ||| |||||||||||| ||||||| |   |||||||| ||||||||||||| ||| | ||    
T  38838742 tttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagtctctgattttgcattttgttagtcaaaat-agcc 38838644  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||||| |||||    || ||||||| || |||||| |||| ||||| ||  || ||||| ||| ||| ||||||||||    
T  38838643 ctgaagagacaactggtaagtatattaaaagactaacatgataatattaacaaattattttaatattagggactatttt 38838565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 5362412 - 5362344
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    |||||||| ||||||||||||||||||||||| |||| || ||||||||| ||| | | ||||||||||    
T  5362412 aataaataagtatattgaaggactaatatgaccatattaacgaagtattttaatatcagggactatttt 5362344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 40355004 - 40355076
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||||||||| ||||||||| |||| |||||||||||||||| |||||||| ||| ||||| |  |||||||||    
T  40355004 tgacaataagtatgtatatagaagaactaatatgacaatattaatgaagtgttttaatgtaaatgactatttt 40355076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 1344515 - 1344462
Alignment:
Q  255 tgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    ||||| |||||| ||||||||||||||| || ||||||||| ||||||||||||    
T  1344515 tgacattaaataagtatattgaaggactgatgtgacaatattaatgaagtattt 1344462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 3116963 - 3116911
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaa 311  Q
    ||||| || |||||||||| ||||||||||||||||| |||||| ||||||||    
T  3116963 aataagtaagtatattgaaagactaatatgacaatattaatgaaatatttgaa 3116911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 32996405 - 32996369
Alignment:
Q  259 aataaatatgtatattgaaggactaatatgacaatat 295  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32996405 aataaataagtatattgaaggactaatatgacaatat 32996369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 7944902 - 7944949
Alignment:
Q  11 cacagatattatgtcaagtgtgagtaaaaatttcactttgcatgaaat 58  Q
    |||||||||| ||||||||||  ||||||||||||||||| |||||||    
T  7944902 cacagatattgtgtcaagtgttggtaaaaatttcactttgtatgaaat 7944949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 18942747 - 18942810
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaata 212  Q
    |||||||||||||| |||||  ||||||||||||| || |||| ||||| |||||| |||||||    
T  18942747 tttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaattttaaaata 18942810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 3045274 - 3045245
Alignment:
Q  78 gggctatgtggggctaaagccccacatgcc 107  Q
    ||||||||||||||||||||||||||||||    
T  3045274 gggctatgtggggctaaagccccacatgcc 3045245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 327
Target Start/End: Complemental strand, 17365 - 17189
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatacatgattttgtattttgttagtcataataatcc 248  Q
    |||||||||||||| || || || ||||   |||| | ||||| ||||||||||||||||||||   | ||||||||||   |  |||||| |||  |||    
T  17365 tttggtccctgaatgtgcaacaagtagtagcaatagtttctcaatgtattaaaattctaaaataggccctgattttgtaccat--tagtcaaaatggtcc 17268  T
Q  249 ctgaagtgacaataaatatgtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttatggactatttt 327  Q
    ||| |||||||||||||| ||||||||||  |||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  17267 ctgtagtgacaataaataagtatattgaaatactagtatgacaatattaacgaagtattttaatgttatggactatttt 17189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 80275 - 80335
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 209  Q
    |||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  80275 tttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 80335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 80768 - 80828
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 209  Q
    |||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  80768 tttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 80828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 81261 - 81321
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 209  Q
    |||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  81261 tttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 81321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 81754 - 81814
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 209  Q
    |||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  81754 tttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 81814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 82247 - 82307
Alignment:
Q  149 tttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaa 209  Q
    |||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  82247 tttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 82307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 20691 - 20654
Alignment:
Q  271 tattgaaggactaatatgacaatatcaatgaagtattt 308  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  20691 tattgaaggactaatatgacaatattaatgaaatattt 20654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1574 times since January 2019
Visitors: 4422