View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_low_23 (Length: 306)
Name: NF0679_low_23
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 8840037 - 8840212
Alignment:
| Q |
73 |
ctcaaatcccatgtattcattcctctgaatcctctgaatcatacgtgatattcctactccacctatagacaaccatacaagtcatgaaagccatgttgta |
172 |
Q |
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| T |
8840037 |
ctcaaatcccatgtattcattattctgaatcctctgaatcatgcgtgatattcctactccacctatagacaaccatacaagt---gaaagccatgttgta |
8840133 |
T |
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| Q |
173 |
agcaagtagatttcatagagaaatatgcatagggaaatgaaagcttaaaatgtaaaaattaattaacaatcgtcatatt |
251 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
8840134 |
agcaagtagatttcatagagaaatatgcatagtgaaatgaaagcttaaaatgtaaaaactaattagcaatcgtcatatt |
8840212 |
T |
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