View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679_low_24 (Length: 297)

Name: NF0679_low_24
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679_low_24
NF0679_low_24
[»] chr4 (6 HSPs)
chr4 (13-268)||(45764739-45764994)
chr4 (14-264)||(21858089-21858338)
chr4 (14-264)||(21913952-21914201)
chr4 (14-268)||(35194254-35194501)
chr4 (50-147)||(12594847-12594944)
chr4 (229-268)||(12594983-12595022)
[»] chr3 (1 HSPs)
chr3 (14-266)||(9665724-9665969)
[»] chr7 (6 HSPs)
chr7 (48-268)||(30022863-30023080)
chr7 (14-268)||(33696727-33696978)
chr7 (14-268)||(21386616-21386866)
chr7 (186-268)||(29644612-29644694)
chr7 (25-134)||(29644702-29644810)
chr7 (200-264)||(2373026-2373090)
[»] chr6 (3 HSPs)
chr6 (59-268)||(3377574-3377776)
chr6 (25-268)||(32154711-32154941)
chr6 (168-268)||(14608513-14608613)
[»] chr1 (6 HSPs)
chr1 (48-266)||(43214946-43215161)
chr1 (48-264)||(22388814-22389028)
chr1 (50-268)||(32814694-32814909)
chr1 (164-268)||(44209737-44209841)
chr1 (164-268)||(44209560-44209664)
chr1 (49-114)||(44209844-44209909)
[»] chr2 (10 HSPs)
chr2 (14-261)||(10315670-10315912)
chr2 (14-268)||(10316034-10316283)
chr2 (14-268)||(10317080-10317329)
chr2 (48-268)||(10316749-10316965)
chr2 (14-268)||(9758747-9758987)
chr2 (168-268)||(10315455-10315555)
chr2 (65-268)||(14252335-14252534)
chr2 (191-268)||(10316531-10316608)
chr2 (174-265)||(5607270-5607361)
chr2 (14-147)||(10316398-10316529)
[»] chr5 (7 HSPs)
chr5 (14-268)||(38424575-38424820)
chr5 (25-268)||(13545031-13545270)
chr5 (14-268)||(27341639-27341880)
chr5 (80-263)||(25455804-25455984)
chr5 (48-228)||(27188388-27188565)
chr5 (204-268)||(21362182-21362246)
chr5 (64-144)||(21362267-21362347)
[»] scaffold0140 (1 HSPs)
scaffold0140 (25-268)||(4623-4861)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 45764739 - 45764994
Alignment:
Q  13 aatattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttat 112  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  45764739 aatattaaaggtaaacgattaacagttaactttaagcgattttcattgttaaatgttaaaatgaaatatggaactggaagcaacacatggaacatcttat 45764838  T
Q  113 tagaccatttttattgcaatgatgacacctttggagattggaatccaccctcaccaacctcacaattatcattttcttcataatcaccttcatagtagat 212  Q
    ||| ||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45764839 taggccattttcattgcaatgaggacacctttggaaattggaatccaccctcaccaacctcacaattatcatcttcttcataatcaccttcatagtagat 45764938  T
Q  213 tttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45764939 tttacaacttccataacatgtttcacaaggaacaaattttatatcaccacaggcct 45764994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 21858338 - 21858089
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| | ||||| ||||||| | |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  21858338 atattaaaggcaaacaactaacaattaactt-aggccattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacacatgaaacatcttatt 21858240  T
Q  114 a---gaccatttttattgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcata 206  Q
    |   |  |||||| ||||||||||  |||||||||||       |||||| ||||||    ||||||||||||||||| |||||||||||||||||||||    
T  21858239 attaggtcattttcattgcaatgagaacacctttgga-------atccacactcacccgccaacctcacaattatcatcttcttcataatcaccttcata 21858147  T
Q  207 gtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaa 264  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  21858146 gtagattttacaacttacataacatgtttcacaaggaacaaattttatatcaccacaa 21858089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 21914201 - 21913952
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| | ||||| ||||||| | |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  21914201 atattaaaggcaaacaactaacaattaactt-aggccattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacacatgaaacatcttatt 21914103  T
Q  114 a---gaccatttttattgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcata 206  Q
    |   |  |||||| ||||||||||  |||||||||||       |||||| ||||||    ||||||||||||||||| |||||||||||||||||||||    
T  21914102 attaggtcattttcattgcaatgagaacacctttgga-------atccacactcacccgccaacctcacaattatcatcttcttcataatcaccttcata 21914010  T
Q  207 gtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaa 264  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  21914009 gtagattttacaacttacataacatgtttcacaaggaacaaattttatatcaccacaa 21913952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 35194254 - 35194501
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| ||||||| ||||||| | | |||||| |||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||      
T  35194254 atattaaaggcaaacaattaacaattaactt-aggtcattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacatatggaacatcttagg 35194352  T
Q  114 agaccatttttattgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagta 209  Q
    |   |||||| ||||||||||  ||||||||| |       |||||| ||||||    ||||||||||||||||  |||||||||||||| |||||||||    
T  35194353 a---cattttcattgcaatgagaacacctttgaa-------atccacactcacccatcaacctcacaattatcaccttcttcataatcactttcatagta 35194442  T
Q  210 gattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
     |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  35194443 tattttacaattttcataacatgtttcacaagcaacaaattttatatcaccacaagcct 35194501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 12594847 - 12594944
Alignment:
Q  50 catttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacacctttgga 147  Q
    |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||  ||| |||||||    
T  12594847 cattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacacatgaaacatcttattagactattttcattacaatgagaacatctttgga 12594944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 12594983 - 12595022
Alignment:
Q  229 catgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  12594983 catgtttcacaaggaacaaactttatatcaccacaagcct 12595022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 9665724 - 9665969
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||||| |||| ||||||| |||||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||    
T  9665724 atattaaaagcaaaccattaacaattaactttaagccattttcattgttaaatgtcaaaataaaatatggaactagaaacaacacatgtaacatcttatt 9665823  T
Q  114 agaccatttttattgcaatgatgacacctttggagattggaatccaccctcaccaacctcacaattatcattttcttcataatcaccttcatagtagatt 213  Q
    ||  |||||| |||||||||| |||||||||||       ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  9665824 aggtcattttcattgcaatgaggacacctttgg-------aatccacactcaccaacctcacaattatcatcttcttcataatcatcttcatagtagatt 9665916  T
Q  214 ttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagc 266  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  9665917 ttacaacttccatgacatgtttcacaaggaacaaactttatatcaccacaagc 9665969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 48 - 268
Target Start/End: Complemental strand, 30023080 - 30022863
Alignment:
Q  48 gccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacacctttgga 147  Q
    |||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |    
T  30023080 gccattttcattgtcaaatgtcaaaatgaaatatggaactagaaacaacacatgaaacatcttattaggccattttcattgcaatgagaacacctttgaa 30022981  T
Q  148 gattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaagga 243  Q
           |||||| ||||||    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30022980 -------atccacactcacccacaaacctcacaattatcatcttcttcataatcaccttcatagtagattttacaacttccataacatgtttcacaagga 30022888  T
Q  244 acaaattttatatcaccacaagcct 268  Q
    ||||| |||||||||||||||||||    
T  30022887 acaaactttatatcaccacaagcct 30022863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 33696727 - 33696978
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaa-tatggaactagaagcaacacatgaaacatcttat 112  Q
    |||||||| | |||| ||||||| ||||||| | |||||||| |||||||| ||| ||||||||| ||||||||||||| ||||||||| ||||||||||    
T  33696727 atattaaaggcaaacaattaacaattaactt-aggccattttcattgttaagtgtcaaaatgaaaatatggaactagaaacaacacatggaacatcttat 33696825  T
Q  113 tagaccatttttattgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagt 208  Q
    ||| ||||||| ||||||||||  |||||||| ||       |||||| ||||||    ||||||||||||||||| |||||||||||||||||||||||    
T  33696826 taggccattttcattgcaatgagaacacctttaga-------atccacactcacccaccaacctcacaattatcatcttcttcataatcaccttcatagt 33696918  T
Q  209 agattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  33696919 agattttacaacttccataacatgtttaacaaggaacaaactttatatcaccacaagcct 33696978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 21386616 - 21386866
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| |||||| ||||||| |||||||  | ||||||  |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  21386616 atattaaaggtaaacaattaacaattaacttaga-ccatttgcattgttaaatgtcaaaatgaaatatggaactagaaacaacacatgaaacatcttatt 21386714  T
Q  114 agaccatttttattgcaatgatgacacctttggagattggaatccaccctcaccaacctcacaattatcattttcttcataatcaccttcatagtagatt 213  Q
    ||  |||||| ||||||||||  ||||||||||| ||    |  |||||  |||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  21386715 aggacattttcattgcaatgagaacacctttgga-atccatactcaccc--accaacctcacaattatcatcttcttcgtaattaccttcatagtagatt 21386811  T
Q  214 ttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    |||||| ||||||||||||||||||||| |||||| || ||||||||||||||||    
T  21386812 ttacaacttccataacatgtttcacaagaaacaaacttgatatcaccacaagcct 21386866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 29644694 - 29644612
Alignment:
Q  186 ttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  29644694 ttcttcataatcaccttcatagtagattttacaacttccataacatgtttcacaaggaacaaaatttatgtcacgacaagcct 29644612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 29644810 - 29644702
Alignment:
Q  25 aaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccattttt 124  Q
    |||| ||||||| ||||||| | | |||||| |||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||  |||||||     
T  29644810 aaacaattaacaattaactt-aggtcattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacacatagaacatcttattatgccattttc 29644712  T
Q  125 attgcaatga 134  Q
    ||||||||||    
T  29644711 attgcaatga 29644702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 2373090 - 2373026
Alignment:
Q  200 cttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaa 264  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||||  ||||||||||||||    
T  2373090 cttcatagtagattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcaccacaa 2373026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 59 - 268
Target Start/End: Complemental strand, 3377776 - 3377574
Alignment:
Q  59 tgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacacctttggagattggaatcc 158  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||| |||||||||| |||||||||| |       ||||    
T  3377776 tgttaaatgttaaaatgaaatatggaactagaaacaacacatggaacatcttgttaggccattttcattgcaatgaggacacctttgaa-------atcc 3377684  T
Q  159 accctcaccaacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatca 258  Q
    || ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  3377683 acactcaccaacctcataatcatcatcttcttcataatcaccttcatagtagattttacaacttccataacatttttcacaaggaacaaactttatatca 3377584  T
Q  259 ccacaagcct 268  Q
    ||||||||||    
T  3377583 ccacaagcct 3377574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 268
Target Start/End: Original strand, 32154711 - 32154941
Alignment:
Q  25 aaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccattttt 124  Q
    |||| ||||||| ||||||| | |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| | |           
T  32154711 aaacaattaacaattaactt-aggccattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacacatgaaacatcttattgggcg------ 32154803  T
Q  125 attgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagtagattttacaat 220  Q
       |||||||  |||||||||||       |||||| ||||||    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||     
T  32154804 ---gcaatgacaacacctttgga-------atccacactcacccaccaacctcacaattatcatcttcttcataatcatcttcatagtagattttacaac 32154893  T
Q  221 ttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||||    
T  32154894 ttccataacatgtttcataaggaacgaactttatatcaccacaagcct 32154941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 14608613 - 14608513
Alignment:
Q  168 aacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcc 267  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14608613 aacctcacaattatcatcttctttataatcacctccatagtagattttacaacttccataacatgtttcacaaggaacaaattttatatcaccacaagcc 14608514  T
Q  268 t 268  Q
    |    
T  14608513 t 14608513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 48 - 266
Target Start/End: Complemental strand, 43215161 - 43214946
Alignment:
Q  48 gccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacacctttgga 147  Q
    |||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||| || |||||||||||    
T  43215161 gccattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacacatggaacatcttattaggccattttcattgcaatcataacacctttgga 43215062  T
Q  148 gattggaatccaccctca----ccaacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaagga 243  Q
           |||||| ||||    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  43215061 -------atccacactcatccaccaacctcacaattaccatcttcttcataatcaccttcatagtagattttacaacttccacaacatgtttcacaagga 43214969  T
Q  244 acaaattttatatcaccacaagc 266  Q
    ||||| |||||||||||||||||    
T  43214968 acaaactttatatcaccacaagc 43214946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 22389028 - 22388814
Alignment:
Q  48 gccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatctt-attagaccatttttattgcaatgatgacacctttgg 146  Q
    |||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||| | ||||| ||||||||||  |||| |||||    
T  22389028 gccattttcattgttaaatgtcaaaatgaaatatgtaactagaaacaacacatgaaacatctttattaggctattttcattgcaatgagaacacatttgg 22388929  T
Q  147 agattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaagg 242  Q
    |       |||||| ||||||    ||||||||||||||||| |||||||||| ||| ||||||||||||||||||| || |||||||||||||| ||||    
T  22388928 a-------atccacactcacccaccaacctcacaattatcatcttcttcataaccacattcatagtagattttacaactttcataacatgtttcagaagg 22388836  T
Q  243 aacaaattttatatcaccacaa 264  Q
    |||||| |||||||||||||||    
T  22388835 aacaaactttatatcaccacaa 22388814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 50 - 268
Target Start/End: Complemental strand, 32814909 - 32814694
Alignment:
Q  50 catttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacacctttggaga 149  Q
    |||||| ||||||||| || |||||||||||||||||||||| ||||||||| |||||| ||||||  |||||| |||| |||||  ||||||||| |      
T  32814909 cattttcattgttaaacgtcaaaatgaaatatggaactagaaacaacacatggaacatcatattaggacattttcattgaaatgagaacacctttgaa-- 32814812  T
Q  150 ttggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaac 245  Q
         |||||| ||||||    ||||||||||||| ||| |||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  32814811 -----atccacactcacccaccaacctcacaattaccatcttcttcgtaatcaccttcatagtagattttacaacttacataacatgtttaacaaggaac 32814717  T
Q  246 aaattttatatcaccacaagcct 268  Q
    ||| |||||||||||||||||||    
T  32814716 aaactttatatcaccacaagcct 32814694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 44209841 - 44209737
Alignment:
Q  164 caccaacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccaca 263  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  44209841 caccaacctcacaattatcatcttcttcataatcaccttcatagtagattttacaacttccataacatgtttcataaggaacaaactttatatcaccaca 44209742  T
Q  264 agcct 268  Q
    |||||    
T  44209741 agcct 44209737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 44209664 - 44209560
Alignment:
Q  164 caccaacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccaca 263  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  44209664 caccaacctcgcaattatcatcttcttcataatcaccgtcatagtagattttacaacttccataacatgtttcataaggaacaaactttatatcaccaca 44209565  T
Q  264 agcct 268  Q
    |||||    
T  44209564 agcct 44209560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 44209909 - 44209844
Alignment:
Q  49 ccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatta 114  Q
    ||||||| |||||||| ||| ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  44209909 ccattttcattgttaattgtcaaaatgaaacatggaactagaaacaacacatgaaacttcttatta 44209844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 10315670 - 10315912
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| ||||||| ||||||| | |||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  10315670 atattaaaggcaaacaattaacaattaactt-aggccattttcattgttaaatgtcaaaatgaaatatg-aactagaaacaacacatgaaacatcttatt 10315767  T
Q  114 agaccatttttattgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagta 209  Q
    ||  |||||| |||||||| |  |||||||||||       |||||| ||||||    ||||||||||||||||| ||||||||||||||||||||||||    
T  10315768 aggtcattttcattgcaataagaacacctttgga-------atccacactcacccacaaacctcacaattatcatcttcttcataatcaccttcatagta 10315860  T
Q  210 gattttacaatttccataacatgtttcacaaggaacaaattttatatcacca 261  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  10315861 gattttacaacttccataacatgtttcacaaggaacaaactttatatcacca 10315912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 10316034 - 10316283
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| ||||||| ||||||| | |||||||| |||||||||||| ||||||||||||| |||||||| ||||||||| || |||||||     
T  10316034 atattaaaggcaaacaattaacaattaactt-aggccattttcattgttaaatgtcaaaatgaaatatg-aactagaaacaacacatggaatatcttatg 10316131  T
Q  114 agaccatttttattgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagta 209  Q
    ||||| |||| |||  ||| |  |||||||||||       |||||| ||||||    ||||||||||||||||| ||||||||||||||||||||||||    
T  10316132 agaccgttttcattataataagaacacctttgga-------atccacactcacccacaaacctcacaattatcatcttcttcataatcaccttcatagta 10316224  T
Q  210 gattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  10316225 gattttacaacttccataacatgtttcacaaggaacaaactttatatcaccacaagcct 10316283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 10317080 - 10317329
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| ||||||| ||||||| | |||||||| ||||||||||||  |||||||||||| |||||||| ||||||||| ||||||||||     
T  10317080 atattaaaggcaaacaattaacaattaactt-aggccattttcattgttaaatgtcgaaatgaaatatg-aactagaaacaacacatggaacatcttatg 10317177  T
Q  114 agaccatttttattgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagta 209  Q
    || || |||| |||||||| |  |||||||||||       |||||| ||||||    ||||||||||||||||| ||||||||||| ||||||||||||    
T  10317178 aggccgttttcattgcaataagaacacctttgga-------atccacactcacccacaaacctcacaattatcatcttcttcataattaccttcatagta 10317270  T
Q  210 gattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  10317271 gattttacaacttccataacatgtttcacaaggaacaaactttatatcaccataagcct 10317329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 268
Target Start/End: Original strand, 10316749 - 10316965
Alignment:
Q  48 gccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacacctttgga 147  Q
    |||||||| |||||||||||| ||||||||||||| | |||||| ||||||||| |||||||||| || || |||| |||||||| |  |||||| ||||    
T  10316749 gccattttcattgttaaatgtcaaaatgaaatatg-atctagaaacaacacatggaacatcttatgaggccgttttcattgcaataagaacacctgtgga 10316847  T
Q  148 gattggaatccaccctcaccaacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaa 247  Q
     || |  |  ||||| ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  10316848 -atcgacactcacccaca--aacctcacaattatcatcttcttcataatcaccttcatagtagattttacaacttccataacatgtttcgcaaggaacaa 10316944  T
Q  248 attttatatcaccacaagcct 268  Q
    | |||||||||||||||||||    
T  10316945 actttatatcaccacaagcct 10316965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 9758987 - 9758747
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| ||||||| ||||||| | |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||     
T  9758987 atattaaaggcaaacaattaacaattaactt-aggccattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacacatgaaacatattat- 9758890  T
Q  114 agaccatttttattgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagta 209  Q
    || |          |||||||  |||||||||||       |||||| ||||||    |||||| |||||||||| ||||||||||||||||||||||||    
T  9758889 aggcg---------gcaatgagaacacctttgga-------atccacactcacccaccaacctcgcaattatcatcttcttcataatcaccttcatagta 9758806  T
Q  210 gattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  9758805 gattttacaacttccataacatgtttcataaggaacaaactttatatcagcacaagcct 9758747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 10315455 - 10315555
Alignment:
Q  168 aacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcc 267  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||    
T  10315455 aacctcacaattatcatcttcttcataatcaccttcatcgtagattttacaacttccataacatgtttcacaaggaacaaacttaatatcaccacaagcc 10315554  T
Q  268 t 268  Q
    |    
T  10315555 t 10315555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 14252534 - 14252335
Alignment:
Q  65 atgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacacctttggagattggaatccaccctc 164  Q
    |||| ||||||||||||| |||||||| ||||| ||| ||||||||||||| ||||||| | ||||||||  |||| |||||| |    | || ||||      
T  14252534 atgtcaaaatgaaatatgaaactagaaacaacatatgtaacatcttattaggccattttcaatgcaatgagaacacgtttgga-accacactc-accc-- 14252439  T
Q  165 accaacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaa 264  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||  || | ||||||||||||||||||| |||||||||||||||    
T  14252438 accaacctcacaattatcatcttcttcataatcacctttatagtagattttacaacttttatgatatgtttcacaaggaacaaactttatatcaccacaa 14252339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 10316531 - 10316608
Alignment:
Q  191 cataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  10316531 cataatcaccttcatagtagattttacaacttccataacatgtttcacaaggaacaaactttatatcaccacaagcct 10316608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 5607361 - 5607270
Alignment:
Q  174 acaattatcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaag 265  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| ||||    
T  5607361 acaattatcattttcttcataattaccttcatagtagattttacaacttccaaaacatgtttcacaaggaacaagctttatatcaccgcaag 5607270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 10316398 - 10316529
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| ||||||| ||||||| | ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||     
T  10316398 atattaaaggcaaacaattaacaattaactt-aggccatttttattgttaaatgtcaaaatgaaatat-gaactagaaacaacacatggaacatcttatg 10316495  T
Q  114 agaccatttttattgcaatgatgacacctttgga 147  Q
    |  || |||| |||||||| |  |||||||||||    
T  10316496 aagccgttttcattgcaataagaacacctttgga 10316529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 38424820 - 38424575
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| ||||||| ||||||| | |||||||| |||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||| |    
T  38424820 atattaaaggcaaacaattaacaattaactt-aggccattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacatatggaacatcttagt 38424722  T
Q  114 agaccatttttattgcaatgatgacacctttggagattggaatccaccctcaccaacctcacaattatcattttcttcataatcaccttcatagtagatt 213  Q
    || || |||| |||||||||| || ||||||||| ||    |  |||||  ||||||||||||||||||   ||||||||||||||||||||||||||||    
T  38424721 aggcccttttcattgcaatga-ga-acctttgga-atcaacactcaccc--accaacctcacaattatc---ttcttcataatcaccttcatagtagatt 38424630  T
Q  214 ttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38424629 ttacaatttccataacatgtttcacaaggaacaaactttatatcaccacaagcct 38424575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 268
Target Start/End: Complemental strand, 13545270 - 13545031
Alignment:
Q  25 aaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccattttt 124  Q
    |||| ||||||| ||||||| | |||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||  |||||||     
T  13545270 aaacaattaacaattaactt-aggccattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacacatggaacatcttattatgccattttc 13545172  T
Q  125 attgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagtagattttacaat 220  Q
    |||||||||   |||||||||||       |||||| ||||||    ||||||||||||||||| || |||||||||| ||||||||||||||||||||     
T  13545171 attgcaatgggaacacctttgga-------atccacactcacccaccaacctcacaattatcatctttttcataatcatcttcatagtagattttacaac 13545079  T
Q  221 ttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    |||||||||||| |||| |||||||||| ||||||||||| |||||||    
T  13545078 ttccataacatggttcagaaggaacaaactttatatcaccgcaagcct 13545031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 27341880 - 27341639
Alignment:
Q  14 atattaaaagtaaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttatt 113  Q
    |||||||| | |||| |||| || ||||||| | |||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  27341880 atattaaaggcaaacaattagcaattaactt-aggccattttcattgttaaatgtcaaaatgaaatatggaactaaaaacaacacatgaaacatcttatt 27341782  T
Q  114 agaccatttttattgcaatgatgacacctttggagattggaatccaccctca----ccaacctcacaattatcattttcttcataatcaccttcatagta 209  Q
    || |          |||||||  ||| |||||||       |||||| ||||    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  27341781 aggcg---------gcaatgagaacatctttgga-------atccacactcatccaccaacctcacaattatcatcttcttcatattcaccttcatagta 27341698  T
Q  210 gattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    |||||||||| ||||||||||||||||| | |||||||| ||||||| |||||||||||    
T  27341697 gattttacaacttccataacatgtttcatagggaacaaactttatattaccacaagcct 27341639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 25455804 - 25455984
Alignment:
Q  80 atggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacacctttggagattggaatccaccctcaccaacctcacaatt 179  Q
    ||||||||| || |||| |||||||||||||||||| ||||||| ||||||| ||  ||||||||||| ||    | |||||| ||  ||||||||||||    
T  25455804 atggaactacaaacaacgcatgaaacatcttattaggccattttcattgcaacgagaacacctttgga-atccacacccacccaca--aacctcacaatt 25455900  T
Q  180 atcattttcttcataatcaccttcatagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccaca 263  Q
    || || |||||||||||||||||||||||| ||||||||| |||||||  |||||| |||||||||||| ||||||||||||||    
T  25455901 attatcttcttcataatcaccttcatagtatattttacaacttccatagaatgttttacaaggaacaaactttatatcaccaca 25455984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 27188565 - 27188388
Alignment:
Q  48 gccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacacctttgga 147  Q
    |||||||| |||||||||||| |||||||||||||||||||||| |||||||  |||||||||||||  | ||| | |||| |||||  |||||||||||    
T  27188565 gccattttcattgttaaatgtcaaaatgaaatatggaactagaaacaacacacaaaacatcttattaagcaattatcattggaatgagaacacctttgga 27188466  T
Q  148 gattggaatccaccctcaccaacctcacaattatcattttcttcataatcaccttcatagtagattttacaatttccataa 228  Q
     ||    |  ||||  |||||||| |||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||    
T  27188465 -atccacaatcacc--caccaaccacacaattatcatcttcttcataatcaccttcataatagattttactacttccataa 27188388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 21362246 - 21362182
Alignment:
Q  204 atagtagattttacaatttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  21362246 atagtagattttacaacttccataacacgtttcacaacgaacaaactttatatcaccacaagcct 21362182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 21362347 - 21362267
Alignment:
Q  64 aatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccatttttattgcaatgatgacaccttt 144  Q
    ||||| |||||  ||||||||||||||| ||||||||||||||||||||||  ||||||| | |||||||| |||||||||    
T  21362347 aatgtcaaaatagaatatggaactagaaacaacacatgaaacatcttattaagccattttcactgcaatgaggacaccttt 21362267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 268
Target Start/End: Original strand, 4623 - 4861
Alignment:
Q  25 aaacgattaacagttaactttaagccatttttattgttaaatgttaaaatgaaatatggaactagaagcaacacatgaaacatcttattagaccattttt 124  Q
    |||| ||||||| ||||||| | | |||||| |||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||     
T  4623 aaacaattaacaattaactt-aggtcattttcattgttaaat-tcaaaatgaaatatggaactagaaacaacacatggaacatcttattaggccattttc 4720  T
Q  125 attgcaatgatgacacctttggagattggaatccaccctcacc----aacctcacaattatcattttcttcataatcaccttcatagtagattttacaat 220  Q
    ||||||||||  |||| ||||||       |||||| ||||||    ||||||||||||||||| ||||||||||||| ||||||||||  ||||||||     
T  4721 attgcaatgagaacacatttgga-------atccacactcacccaccaacctcacaattatcatcttcttcataatcatcttcatagtatgttttacaac 4813  T
Q  221 ttccataacatgtttcacaaggaacaaattttatatcaccacaagcct 268  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  4814 ttccataacatgttttacaaggaacaaactttatatcaccacaagcct 4861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 167 times since January 2019
Visitors: 4371