View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0679_low_30 (Length: 251)
Name: NF0679_low_30
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_30 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 44945958 - 44945695
Alignment:
| Q |
9 |
caacaatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttttgctagcagttc------------------- |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44945958 |
caacaatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttttgctagcagttcgtggagttctgatgataca |
44945859 |
T |
|
| Q |
90 |
--atcttccatacttcaaagtaattcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgct |
187 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44945858 |
tcatcttccatacttcaaagtacttcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgct |
44945759 |
T |
|
| Q |
188 |
attgtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaata |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44945758 |
attgtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaata |
44945695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 44944301 - 44944041
Alignment:
| Q |
9 |
caacaatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttttgctagcagttcat----------------- |
91 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44944301 |
caacaatatcatggcgtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttttgctagcagttcatggagttctgatgataca |
44944202 |
T |
|
| Q |
92 |
-cttccatacttcaaagtaattcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgctatt |
190 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44944201 |
tcttccatacttcaaagtacttcttcaatcaaacgtatttcgattaccatttgcttccttgttgcatttttatgcaatgttcagtctataaggtgctatt |
44944102 |
T |
|
| Q |
191 |
gtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaata |
251 |
Q |
| |
|
|||||||||| |||||||||| ||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
44944101 |
gtcatgtcagttttttaatcaccgcacctacactccgagataaaaaggcatatatggaata |
44944041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 44941135 - 44941059
Alignment:
| Q |
9 |
caacaatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttttgctagca |
85 |
Q |
| |
|
||||||||| ||||| |||||||| || |||||||||| ||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
44941135 |
caacaatataatggcatctactctactagctacaacagcaatcacactaagttcactaattggagtttttgcaagca |
44941059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1638 times since January 2019
Visitors: 4426