View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_low_37 (Length: 221)
Name: NF0679_low_37
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4266579 - 4266438
Alignment:
| Q |
1 |
taacatcaatctcaatttcatatgaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaatcatt |
100 |
Q |
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| T |
4266579 |
taacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccgccacttcggtaataaattttatcatcaaatcatt |
4266480 |
T |
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| Q |
101 |
aggatatgtaatccttgtaaaatcaggaaggtccttcaacct |
142 |
Q |
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| T |
4266479 |
aggatctgtaatccttgtaaaatcaggaaggtccttcaacct |
4266438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4458314 - 4458455
Alignment:
| Q |
1 |
taacatcaatctcaatttcatatgaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaatcatt |
100 |
Q |
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| T |
4458314 |
taacatcactctcaagttcataagaagtattgataacaatagaagaggctctatgacatctatctgccacttcggttataaattttatcatcaaattatt |
4458413 |
T |
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| Q |
101 |
aggatatgtaatccttgtaaaatcaggaaggtccttcaacct |
142 |
Q |
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| T |
4458414 |
aggatctgtaatctttataaaatcaggaaggtccttcaacct |
4458455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 4506585 - 4506705
Alignment:
| Q |
10 |
tctcaatttcatatgaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaatcattaggatatgt |
109 |
Q |
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| T |
4506585 |
tctcaagttcattagaagtattgagaacaatagaagaggctctatgaaatgtttctgctgcttcaataataaattctatcctcaaatcgttaggatctgt |
4506684 |
T |
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| Q |
110 |
aatccttgtaaaatcaggaag |
130 |
Q |
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| T |
4506685 |
tgtccttataaaatcaggaag |
4506705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 4481412 - 4481550
Alignment:
| Q |
1 |
taacatcaatctcaatttcatatgaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaatcatt |
100 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||||||||| || ||| ||||| |||||| |||| | |||||| | || ||||||| ||||| | ||| |
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| T |
4481412 |
taacatcactctcaagttcataagaagtattgataacaaaagcagatgctctttgacatttatctgtcacttcatttttatattttatgatcaagtgatt |
4481511 |
T |
|
| Q |
101 |
aggatatgtaatccttgtaaaatcaggaaggtccttcaa |
139 |
Q |
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| T |
4481512 |
aggatctgttaccttaattaaatcaggaaggtccttcaa |
4481550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3172460 - 3172564
Alignment:
| Q |
1 |
taacatcaatctcaatttcatatgaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaatcatt |
100 |
Q |
| |
|
|||||||| |||||| ||||| ||||| |||| |||||||| ||| ||| |||||||| |||| | ||||| | ||||||| ||||||||||||||| |
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|
| T |
3172460 |
taacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtgacatttatctcctacttcaatcataaattctatcatcaaatcatt |
3172559 |
T |
|
| Q |
101 |
aggat |
105 |
Q |
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||||| |
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| T |
3172560 |
aggat |
3172564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 4514457 - 4514397
Alignment:
| Q |
78 |
ataaattttatcatcaaatcattaggatatgtaatccttgtaaaatcaggaaggtccttca |
138 |
Q |
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| T |
4514457 |
ataaattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttca |
4514397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 24103718 - 24103859
Alignment:
| Q |
1 |
taacatcaatctcaatttcatatgaagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaatcatt |
100 |
Q |
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|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24103718 |
taacatcactctcaagttcatatgaagtattgataacaatagaagaggctctgtgacatcttaccgccacttcggtaataaattttatcatcaaatcatt |
24103817 |
T |
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| Q |
101 |
aggatatgtaatccttgtaaaatcaggaaggtccttcaacct |
142 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24103818 |
aggatctgtaatccttgtaaaatcaggaaggtccttcaacct |
24103859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 20863232 - 20863152
Alignment:
| Q |
25 |
aagtattgataacaatagaagaggctctgtgacatctatccgccacttcggtaataaattttatcatcaaatcattaggat |
105 |
Q |
| |
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||||||||| |||||||| ||||||||||||| ||||||| | ||||| | | ||||| ||||| | |||||||||||| |
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|
| T |
20863232 |
aagtattgaaaacaatagcagaggctctgtgaaatctatctactacttcaatgagaaattctatcaacgaatcattaggat |
20863152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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