View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679_low_38 (Length: 210)

Name: NF0679_low_38
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679_low_38
NF0679_low_38
[»] chr7 (1 HSPs)
chr7 (50-200)||(36067616-36067766)
[»] chr1 (1 HSPs)
chr1 (50-200)||(47445456-47445606)
[»] chr4 (2 HSPs)
chr4 (50-200)||(27455221-27455371)
chr4 (88-200)||(49681738-49681850)
[»] scaffold0102 (1 HSPs)
scaffold0102 (50-200)||(32653-32803)
[»] chr6 (4 HSPs)
chr6 (50-200)||(17732490-17732640)
chr6 (50-200)||(30709794-30709944)
chr6 (50-200)||(15347726-15347876)
chr6 (50-184)||(6009119-6009253)
[»] chr3 (3 HSPs)
chr3 (50-200)||(50837933-50838083)
chr3 (50-200)||(47470995-47471144)
chr3 (50-200)||(54560327-54560477)
[»] chr8 (3 HSPs)
chr8 (50-200)||(20111960-20112111)
chr8 (50-200)||(14790971-14791121)
chr8 (50-92)||(18308869-18308911)
[»] chr5 (3 HSPs)
chr5 (50-200)||(5348017-5348167)
chr5 (50-200)||(36429583-36429733)
chr5 (100-200)||(26380043-26380143)
[»] chr2 (3 HSPs)
chr2 (50-183)||(4592919-4593052)
chr2 (64-200)||(10256012-10256148)
chr2 (50-103)||(10255974-10256027)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 36067616 - 36067766
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  36067616 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaag 36067715  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  36067716 gtttatgatgaatagcatgaacaacaacatcaacaataacggttcttctca 36067766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 47445606 - 47445456
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  47445606 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaaaatcatgaacttgttggaaaaagaacaag 47445507  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    |||||| |||||||||||||||||||||||||||| ||||||||| |||||    
T  47445506 gtttataatgaatagcatgaacaacaacatcaacagcaacggttcttctca 47445456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 27455221 - 27455371
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| ||||||||||||||||    
T  27455221 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaag 27455320  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27455321 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctca 27455371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 49681850 - 49681738
Alignment:
Q  88 gaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaaca 187  Q
    |||||||||||||||| ||||||||||  |||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49681850 gaattcatcaacaacataatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaaca 49681751  T
Q  188 acggttcatctca 200  Q
    ||| ||| |||||    
T  49681750 acgattcttctca 49681738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 32653 - 32803
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  32653 tttgttaccttcttgaattaatcaacaacaaccctttgaaattcatcaacaacagaatgaataatagaaaatatcatgaacttgttggaaaaagaacaag 32752  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  32753 gtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctca 32803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 5e-61; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 17732640 - 17732490
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  17732640 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaag 17732541  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    | ||||||||||||||||||||| ||||||||||| ||||| ||| |||||    
T  17732540 ggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctca 17732490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 30709794 - 30709944
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| || |||||||||||||    
T  30709794 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaag 30709893  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  30709894 gtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctca 30709944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 15347726 - 15347876
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  15347726 tttgttaccttcttaaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag 15347825  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    | ||||||||||||||||||||| ||||||||||| ||||| ||| |||||    
T  15347826 ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca 15347876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 6009253 - 6009119
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| || |||| ||||||||||||||||    
T  6009253 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataacagaaaagatcgtggacttgttggaaaaagaacaag 6009154  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaaca 184  Q
    | ||||||||||||||||||||| |||||||||||    
T  6009153 ggttatgatgaatagcatgaacaccaacatcaaca 6009119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 5e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 50838083 - 50837933
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  50838083 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaag 50837984  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    | ||||||||||||||||||||| ||||||||||| ||||| ||| |||||    
T  50837983 ggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctca 50837933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 47470995 - 47471144
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  ||||| ||||||||||| ||||||||||||||||    
T  47470995 tttgttaccttcttgaattaatcaacaacaaccctttggaat-catcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaag 47471093  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    |||||| |||||||||||||||||||||||||||| ||||||||| |||||    
T  47471094 gtttataatgaatagcatgaacaacaacatcaacatcaacggttcttctca 47471144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 54560327 - 54560477
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  54560327 tttgttaccttcttgaattaatcaactacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag 54560426  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    | ||||||||||||||||||||| ||||||||||| ||||| ||| |||||    
T  54560427 ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca 54560477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 3e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 20112111 - 20111960
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| ||||||||||||||||    
T  20112111 tttgttaccttcttgaattaatcaacagcaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaag 20112012  T
Q  150 g-tttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20112011 gttttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctca 20111960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 14790971 - 14791121
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  14790971 tttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaatatcatgaacttgttggaaaaagaacaag 14791070  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    | ||||||||||||||||||||| ||||||||||| ||||| ||| |||||    
T  14791071 ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca 14791121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 18308869 - 18308911
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaatt 92  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  18308869 tttgttaccatcttgaattaatcaacaacaactctttggaatt 18308911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 5348017 - 5348167
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  5348017 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag 5348116  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    | ||||||||||||||||||||| ||||||||||| ||||| ||| |||||    
T  5348117 ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca 5348167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 36429583 - 36429733
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||| ||||||||||| || |||||||||||||    
T  36429583 tttgttaccttcttgaattaatcaacaacaaccttttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaag 36429682  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| |||||    
T  36429683 gtttatgatgaatagcatggacaacaacatcaacagcaacggttcttctca 36429733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 26380043 - 26380143
Alignment:
Q  100 aacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaacaacggttcatctc 199  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| || || |||||| ||||| ||||    
T  26380043 aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacagcaacagcaacaatggttcttctc 26380142  T
Q  200 a 200  Q
    |    
T  26380143 a 26380143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 4592919 - 4593052
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  4592919 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag 4593018  T
Q  150 gtttatgatgaatagcatgaacaacaacatcaac 183  Q
    | ||||||||||||||||||||| ||||||||||    
T  4593019 ggttatgatgaatagcatgaacaccaacatcaac 4593052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 10256012 - 10256148
Alignment:
Q  64 gaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaaggtttatgatgaata 163  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  10256012 gaattcatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaata 10256111  T
Q  164 gcatgaacaacaacatcaacaacaacggttcatctca 200  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  10256112 gcatgaacaacaacatcaacagcaacggttcttctca 10256148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 10255974 - 10256027
Alignment:
Q  50 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255974 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca 10256027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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