View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_low_39 (Length: 201)
Name: NF0679_low_39
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 8554316 - 8554172
Alignment:
| Q |
36 |
atgaagtcatcaaagcaattttgcttgtttgaaagggatgctgctttatgccattcctctccgtattctccaccgccacggatatttgctatgcagaaaa |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554316 |
atgaagtcatcaaagcaattttgcttgtttgaaagggatgctgctttatgccattcctctccgtattctccaccgccacggatatttgctatgcagaaaa |
8554217 |
T |
|
| Q |
136 |
caaaacctaaatatcttgctaggacaatatggctgacgctaaaag |
180 |
Q |
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| T |
8554216 |
caaaacctaaatatcttgctaggacaatatggctgacgctaaaag |
8554172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 8558791 - 8558663
Alignment:
| Q |
36 |
atgaagtcatcaaagcaattttgcttgtttgaaagggatgctgctttatgccattcctctccgtattctccaccgccacggatatttgctatgcagaaaa |
135 |
Q |
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|||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| || |
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| T |
8558791 |
atgaagtcatcaaagcaattttgctttttcgaaagggatcctgctttatgccactcctctccgtattctccaccaccacgaatatttgctatgcagataa |
8558692 |
T |
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| Q |
136 |
caaaacctaaatatcttgctaggacaata |
164 |
Q |
| |
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|| ||||||||| ||||| ||||||||| |
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| T |
8558691 |
cagaacctaaatgccttgcaaggacaata |
8558663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 53738715 - 53738604
Alignment:
| Q |
36 |
atgaagtcatcaaagcaattttgcttgtttgaaagggatgctgctttatgccattcctctccgtattctccaccgccacggatatttgctatgcagaaaa |
135 |
Q |
| |
|
|||||||||||||||||||| || || || | |||||| |||||||||||||||| || || ||||||||||| ||||| ||||| || |||||| ||| |
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| T |
53738715 |
atgaagtcatcaaagcaattctgttttttagcaagggaacctgctttatgccattcttccccatattctccaccaccacgaatattcgcaatgcagtaaa |
53738616 |
T |
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| Q |
136 |
caaaacctaaat |
147 |
Q |
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|||||||||||| |
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| T |
53738615 |
caaaacctaaat |
53738604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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