View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_low_4 (Length: 499)
Name: NF0679_low_4
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 30 - 464
Target Start/End: Complemental strand, 52409648 - 52409214
Alignment:
| Q |
30 |
gcatgatattaattgttatagtttaatctcctgtgatatgatgatgagagaaagaactctaattccaacatttgtcttttgggctttccttacattaatc |
129 |
Q |
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| T |
52409648 |
gcatgatattaattgttatagtttaatctcctgtgatatgatgatgagagaaagaactctaattccaacatttgtcttctgggctttccttacattaatc |
52409549 |
T |
|
| Q |
130 |
acaccaacacttattctcttgtcagagaattcgaaagccgaccttgaattaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409548 |
acaccaacacttattctcttgtcagagaattcgaaagccgaccttgaattaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaac |
52409449 |
T |
|
| Q |
230 |
caaaattgatatagttaatttgcaccttaattaggcttgtgtacaattaatctttatgtccaactttgcaggaaatattacagagacaatgaaggtaaga |
329 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409448 |
caaaattgatatatttaatttgcaccttaattaggcttgtgtacaattaatctttatttccaactttgcaggaaatattacagagacaatgaaggtaaga |
52409349 |
T |
|
| Q |
330 |
agaatgatcgggcacacacagagtaacatcataagaacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409348 |
agaatgatcgggcacacacagagtaacatcataagaacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccg |
52409249 |
T |
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| Q |
430 |
tatcattattaccattgccaacttcatctcactcg |
464 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
52409248 |
tatcattattaccattgccaacttcatcacactcg |
52409214 |
T |
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