View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_low_7 (Length: 456)
Name: NF0679_low_7
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 44945634 - 44945221
Alignment:
| Q |
1 |
cttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgtactttttggatacaacaact |
100 |
Q |
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| T |
44945634 |
cttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacatcattcagtttgtactttttggatacaacaact |
44945535 |
T |
|
| Q |
101 |
agaatcacaagggatcttcatagtgactcatttagaaaggagagtgatgatgtagaatctgcagtggaggctgattattatcctctagctggcaacagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44945534 |
agaatcacaagggatcttcatagtgactcattcagaaaggagagtgatgatgtagaatctgcagtggaggctgattattatcctctagctggcaacagtt |
44945435 |
T |
|
| Q |
201 |
tagctcaaaatgcagctgtagataatgtataattgatgtatattcgtagcaattacagttttggcgttctttttatgaatgattctgttaataagtatat |
300 |
Q |
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| T |
44945434 |
tagctcaaaatgcagctgtagataatgtataattgatgtatattcgtagcaattacagttttgg--------------atgattctgttaataagtatat |
44945349 |
T |
|
| Q |
301 |
gaacatatgccttggatgttggaatgattcgatgagagtgaatttcagtttcttgtcaatgtctgtagaattcatttaaaggtgtccttgcatttattgt |
400 |
Q |
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| T |
44945348 |
gaacatatgccttggatgttggaatgattcgatgagagtgaatttcagtttcttgtcaatgtctgtagaattcatttaaaggtgtccttgcatttattgt |
44945249 |
T |
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| Q |
401 |
aagtcacccaatcatgttggctgtacct |
428 |
Q |
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| T |
44945248 |
aagtcacccaatcatgttggctgtacct |
44945221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 44943980 - 44943706
Alignment:
| Q |
1 |
cttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgtactttttggatacaacaact |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44943980 |
cttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacatcattcagtttgtactttttggatacaacaact |
44943881 |
T |
|
| Q |
101 |
agaatcacaagggatcttcatagtgactcatttagaaaggagagtgatgatgtagaatctgcagtggaggctgattattatcctctagctggcaacagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |||| | |
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| T |
44943880 |
agaatcacaagggatcttcatagtgactcattcagaaaggagagtgatgatatagaatctgcagtggagactgattattatcctttagctggtaacaact |
44943781 |
T |
|
| Q |
201 |
tagctcaaaatgcagctgtagataatgtataattgatgtatattcgtagcaattacagttttggcgttcttttta |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
44943780 |
tagctcaaaatgcagctgtagataatgtataattgatgtatattcgtagtaatatcagttttggcgatcttttta |
44943706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 44940794 - 44940692
Alignment:
| Q |
18 |
tcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgtactttttggatacaacaactagaatcacaagggatct |
117 |
Q |
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|
||||||||||||||||||| ||||| ||||||| ||||| || || ||||| || | ||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
44940794 |
tcctatggatttatgggcccatacccatgtttatttgttcttgcttcacatcatttattttgtacttcttggatacaaccactcaaatcacaagggatct |
44940695 |
T |
|
| Q |
118 |
tca |
120 |
Q |
| |
|
||| |
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|
| T |
44940694 |
tca |
44940692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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