View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_low_8 (Length: 448)
Name: NF0679_low_8
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 30 - 448
Target Start/End: Complemental strand, 48044393 - 48043944
Alignment:
| Q |
30 |
caactgcattctcacaaggggtcaaatgtttgtcgaacaggaaaggttggagaaacataggtcccatgaacaatcttgtttcaagcctcaccttactagc |
129 |
Q |
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| T |
48044393 |
caactgcattctcacaaggggtcaaatgtttgtcgaacaggaaaggttggagaaacataggtcccatgaacaatcttgtttcaagcctcaccttactagc |
48044294 |
T |
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| Q |
130 |
tattaattgactcggagaattattcaaatcaaattagcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaataaa |
229 |
Q |
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| T |
48044293 |
tattaattgactctgagaattattcaaatcaaataagcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaataaa |
48044194 |
T |
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| Q |
230 |
atgaataaaagagtgatgtcacgtcaccaaatggcatgtcacaatctgcatcac--------------------aaatagaatcaattgcatcaatgtga |
309 |
Q |
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| T |
48044193 |
atgaataaaagagtgatggcacgtcaccaaatggcatgtcacaatctgcatcacaaatcccctccgaaagctacaaatagaatcaattgcatcaatgtga |
48044094 |
T |
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| Q |
310 |
aaactattaagacgatattgtcacatcaatgttgttacaaacttgtaatcgaa----------actactacctaatttgaacttcatttagatcatttat |
399 |
Q |
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| T |
48044093 |
aaactattaagacgatattgtcacatcaatgttgttacaaacttgtaatcggaaggagcacctactactacctaatttgaacttcatttagatcatttat |
48043994 |
T |
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| Q |
400 |
atggccaggtatcacagaggacaattatcatcca-ttttttgtgctggaa |
448 |
Q |
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| T |
48043993 |
atggccaggtatcacagaggacaattatcatccatttttttgtgctggaa |
48043944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 48051958 - 48051839
Alignment:
| Q |
160 |
aaattagcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatgtcacgtcaccaa |
259 |
Q |
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| T |
48051958 |
aaattagcatgatctatctccctctatatgctgatgtggcacactgccatgttattttccagcaaataaaatgaataaaagagtgatggcacgtcaccaa |
48051859 |
T |
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| Q |
260 |
atggcatgtcacaatctgca |
279 |
Q |
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| T |
48051858 |
atggcatgtcacaatctgca |
48051839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 48057306 - 48057247
Alignment:
| Q |
295 |
attgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttg |
354 |
Q |
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| T |
48057306 |
attgcatcaatgtgaaaactattaggatgatattgtttcatcaattttgtagcaaacttg |
48057247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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