View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_low_9 (Length: 444)
Name: NF0679_low_9
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 433
Target Start/End: Original strand, 20752371 - 20752759
Alignment:
| Q |
29 |
agtatgcattttcactaaatagaattataggaagaagtaacttaataacaatttaaaaacaagtgtgtttacctgtaattgtatttttagtgaggaagtc |
128 |
Q |
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| T |
20752371 |
agtatgcattttcactatgtagaattataggaagaagtaacttaataacaatttaaaaac-------tttacctgtaattgtatttttagtgaggaagtc |
20752463 |
T |
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| Q |
129 |
atggaatccacatattgttgtggagtgtttttcttttgaagatccattgagttatagtaaccaaatatatcattgcttccaatcactatagcaaatatgg |
228 |
Q |
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| T |
20752464 |
atggaatccacatattgttgtggagtatttttcttttgaagatccattgagttatagtaaccaaatatatcattgcttccaatcactatagcaaatatgg |
20752563 |
T |
|
| Q |
229 |
attttgagaggtgtttctgaagtgtggatgcttctatttgttgtgtcaatttttcatgcacttgtgaataatagtccacttgctttgtcaaagatattga |
328 |
Q |
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| T |
20752564 |
attttgagaggtgtttctgaagtgtagatgcttctgtttgttgtgtcaatttttcatgcacttgtgaataatagtccacttgctttgtcaaagatattga |
20752663 |
T |
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| Q |
329 |
ttgtctctgcaagaaatgtaatgttatttctattagtcatcattttatttaacattttgatattttgaaaatgttatcaaatatataatttaatctaaat |
428 |
Q |
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| T |
20752664 |
ctgtctctgcaagaaatgtaatg---------ttagtcatcattttatttaacattttgatattttgaaaatgttatcaaatatataatttaatccaaat |
20752754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 64 - 350
Target Start/End: Original strand, 20756996 - 20757281
Alignment:
| Q |
64 |
agtaacttaataacaatttaaaaacaagtgtgtttacctgtaattgtatttttagtgaggaagtcatggaatccacatattgttgtggagtgtttttctt |
163 |
Q |
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| T |
20756996 |
agtaacttaattacaatttgaaaccat-tgtgtttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtttttctt |
20757094 |
T |
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| Q |
164 |
ttgaagatccattgagttatagtaaccaaatatatcattgcttccaatcactatagcaaatatggattttgagaggtgtttctgaagtgtggatgcttct |
263 |
Q |
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| T |
20757095 |
ttgaagatcctttgaattaaagtaaccaaatatatcattgcttccaatcacaacagcaaatatggattttgagagatgattctgaagtatagatgcttct |
20757194 |
T |
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| Q |
264 |
atttgttgtgtcaatttttcatgcacttgtgaataatagtccacttgctttgtcaaagatattgattgtctctgcaagaaatgtaat |
350 |
Q |
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| T |
20757195 |
gtttgttgtgtcaatttttcatgcatttgtgaataatagtccacttgctttgtcaaaggtattgattgtctctgcaagaaatgtaat |
20757281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 329
Target Start/End: Original strand, 20800298 - 20800535
Alignment:
| Q |
92 |
tgtgtttacctgtaattgtatttttagtgaggaagtcatggaatccacatattgttgtggagtgtttttcttttgaagatccattgagttatagtaacca |
191 |
Q |
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|||| ||||||||| ||| | ||||||||| |||| |||||| | ||| | |||||||| ||||||||||||||||||||| |||| || ||||| || |
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| T |
20800298 |
tgtgcttacctgtagttgcacttttagtgaagaagccatggatttgacaaactgttgtggggtgtttttcttttgaagatcctttgaattgaagtaatca |
20800397 |
T |
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| Q |
192 |
aatatatcattgcttccaatcactatagcaaatatggattttgagaggtgtttctgaagtgtggatgcttctatttgttgtgtcaatttttcatgcactt |
291 |
Q |
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| T |
20800398 |
aagatatcattgttgccaatcacaacaaagaagatggattctgagaggtgtttctgaagtgttgatacttctatttgttttgtcgattcttcatacattt |
20800497 |
T |
|
| Q |
292 |
gtgaataatagtccacttgctttgtcaaagatattgat |
329 |
Q |
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| T |
20800498 |
gtgaatagtagtccacttgctctgttaaatgtattgat |
20800535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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