View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0680_high_5 (Length: 289)

Name: NF0680_high_5
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0680_high_5
NF0680_high_5
[»] chr8 (2 HSPs)
chr8 (30-207)||(39706769-39706946)
chr8 (58-97)||(36566180-36566219)
[»] chr1 (4 HSPs)
chr1 (58-194)||(45833766-45833903)
chr1 (58-97)||(8671225-8671264)
chr1 (58-97)||(43241320-43241359)
chr1 (58-97)||(49348333-49348372)
[»] chr5 (5 HSPs)
chr5 (58-97)||(1274569-1274608)
chr5 (58-104)||(24177821-24177867)
chr5 (136-189)||(17212479-17212532)
chr5 (58-97)||(1288528-1288567)
chr5 (58-97)||(2076413-2076452)
[»] chr7 (8 HSPs)
chr7 (58-104)||(38606335-38606381)
chr7 (58-97)||(11593257-11593296)
chr7 (64-103)||(24178140-24178179)
chr7 (58-97)||(39907318-39907357)
chr7 (58-97)||(46356790-46356829)
chr7 (58-97)||(49028585-49028624)
chr7 (66-104)||(32629905-32629943)
chr7 (57-97)||(33350744-33350784)
[»] chr4 (4 HSPs)
chr4 (58-104)||(23907241-23907287)
chr4 (58-97)||(435536-435575)
chr4 (58-97)||(48623466-48623505)
chr4 (58-97)||(53703914-53703953)
[»] chr3 (4 HSPs)
chr3 (58-104)||(38849391-38849437)
chr3 (58-97)||(52138132-52138171)
chr3 (64-98)||(19736518-19736552)
chr3 (65-97)||(51448655-51448687)
[»] chr2 (2 HSPs)
chr2 (57-98)||(24584544-24584585)
chr2 (58-104)||(45368564-45368610)
[»] scaffold0018 (1 HSPs)
scaffold0018 (58-97)||(30772-30811)
[»] chr6 (1 HSPs)
chr6 (58-96)||(6082705-6082743)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 39706946 - 39706769
Alignment:
Q  30 gaaatcgtcataaccatatcttgaatgttcacattagtcgaagctccctcatacatatctttgatagctttaataaaataatcataagatatttcttctc 129  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39706946 gaaatcgtcataaccatatcttaaatgttcgcattagttgaagctccctcatacatatctttgatagctctaataaaataatcataagatatttcttctc 39706847  T
Q  130 taaagttttccataaaatctctctagtcattttaccatacgccttcttcaaatcattgaagactaattacatgaagtc 207  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39706846 taaagttttccataaaatttctctaatcattttaccatacgccttcttcaaatcattgaagactaattacatgaagtc 39706769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 36566180 - 36566219
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  36566180 tcacactagtcgaagctccctcatacatatccttgatagc 36566219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 45833903 - 45833766
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagctttaata-aaataatcataagatatttcttctctaaagttttccataaaatctctctagt 156  Q
    ||||||||||||||||||||||||| |||||||||||| || || || ||| |||| ||| || ||| |||||| | | |||||| ||||| |||||||     
T  45833903 tcacattagtcgaagctccctcatatatatctttgataactctagtataaacaatcctaacatcttttttctcttaggctttccacaaaatatctctaga 45833804  T
Q  157 cattttaccatacgccttcttcaaatcattgaagacta 194  Q
    || | || | |||||||||||||||||| |||| ||||    
T  45833803 cactctatcgtacgccttcttcaaatcaatgaaaacta 45833766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 8671264 - 8671225
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  8671264 tcacactagtcgaagctccctcatacatatccttgatagc 8671225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 43241320 - 43241359
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  43241320 tcacactagtcgaagctccctcatacatatccttgatagc 43241359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 49348333 - 49348372
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  49348333 tcacactagtcgaagctccctcatacatatccttgatagc 49348372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 1274608 - 1274569
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  1274608 tcacactagtcgaagctccctcatacatatctttgatagc 1274569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 24177867 - 24177821
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagctttaata 104  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  24177867 tcacactagtcgaagctccctcatacatatccttgatagctctaata 24177821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 17212532 - 17212479
Alignment:
Q  136 tttccataaaatctctctagtcattttaccatacgccttcttcaaatcattgaa 189  Q
    |||||||||||||||||||| || |||| |||||| ||||||||||||| ||||    
T  17212532 tttccataaaatctctctaggcactttatcatacgtcttcttcaaatcaatgaa 17212479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 1288528 - 1288567
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  1288528 tcacactagtcgaagctccctcatacatatccttgatagc 1288567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 2076413 - 2076452
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  2076413 tcacactagtcgaagctccctcatacatatccttgatagc 2076452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 38606381 - 38606335
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagctttaata 104  Q
    ||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  38606381 tcacactagtcgaagctccctcatacatatcttggatagctctaata 38606335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 11593296 - 11593257
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  11593296 tcacactagtcgaagctccctcatacatatccttgatagc 11593257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 24178140 - 24178179
Alignment:
Q  64 tagtcgaagctccctcatacatatctttgatagctttaat 103  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  24178140 tagtcgaagctccctcatacacatccttgatagctttaat 24178179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 39907318 - 39907357
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  39907318 tcacactagtcgaagctccctcatacatatccttgatagc 39907357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 46356790 - 46356829
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  46356790 tcacactagtcgaagctccctcatacatatccttgatagc 46356829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 49028624 - 49028585
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  49028624 tcacactagtcgaagctccctcatacatatccttgatagc 49028585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 32629943 - 32629905
Alignment:
Q  66 gtcgaagctccctcatacatatctttgatagctttaata 104  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  32629943 gtcgaagctccctcatacatatcctggatagctttaata 32629905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 33350744 - 33350784
Alignment:
Q  57 ttcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  33350744 ttcacactagtcgaagctctctcatacatatccttgatagc 33350784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 23907241 - 23907287
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagctttaata 104  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  23907241 tcacactagtcgaagctccctcatacatatccttgatagctctaata 23907287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 435575 - 435536
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  435575 tcacactagtcgaagctccctcatacatatccttgatagc 435536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 48623466 - 48623505
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  48623466 tcacactagtcgaagctccctcgtacatatctttgatagc 48623505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 53703953 - 53703914
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  53703953 tcacactagtcgaagctccctcatacatatccttgatagc 53703914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 38849437 - 38849391
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagctttaata 104  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  38849437 tcacactagtcgaagctccctcatacatatccttgatagctctaata 38849391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 52138171 - 52138132
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  52138171 tcacactagtcgaagctccctcatacatatccttgatagc 52138132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 19736552 - 19736518
Alignment:
Q  64 tagtcgaagctccctcatacatatctttgatagct 98  Q
    ||||||||||||||||||||||||| |||||||||    
T  19736552 tagtcgaagctccctcatacatatccttgatagct 19736518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 51448655 - 51448687
Alignment:
Q  65 agtcgaagctccctcatacatatctttgatagc 97  Q
    |||||||||||||||||||||||| ||||||||    
T  51448655 agtcgaagctccctcatacatatccttgatagc 51448687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 24584544 - 24584585
Alignment:
Q  57 ttcacattagtcgaagctccctcatacatatctttgatagct 98  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  24584544 ttcacagtagtcgaagctccctcatacatatccttgatagct 24584585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 45368564 - 45368610
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagctttaata 104  Q
    ||||| ||||||||||||||||||||||||| | ||||||| |||||    
T  45368564 tcacactagtcgaagctccctcatacatatcctggatagctctaata 45368610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 30811 - 30772
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatagc 97  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  30811 tcacactagtcgaagctccctcatacatatccttgatagc 30772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 6082743 - 6082705
Alignment:
Q  58 tcacattagtcgaagctccctcatacatatctttgatag 96  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  6082743 tcacactagtcgaagctccctcatacatatccttgatag 6082705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 330 times since January 2019
Visitors: 4379