View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0680_low_1 (Length: 879)

Name: NF0680_low_1
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0680_low_1
NF0680_low_1
[»] chr5 (14 HSPs)
chr5 (333-783)||(16800774-16801224)
chr5 (81-268)||(16801289-16801474)
chr5 (333-439)||(31913910-31914018)
chr5 (719-784)||(21238750-21238816)
chr5 (715-776)||(29964155-29964215)
chr5 (715-776)||(30010583-30010643)
chr5 (721-776)||(16497729-16497784)
chr5 (335-439)||(31561447-31561553)
chr5 (711-784)||(19223054-19223128)
chr5 (711-776)||(33892824-33892890)
chr5 (716-776)||(2675062-2675122)
chr5 (713-784)||(34909636-34909708)
chr5 (335-439)||(36180038-36180145)
chr5 (335-403)||(4840959-4841028)
[»] chr6 (7 HSPs)
chr6 (711-776)||(31996230-31996295)
chr6 (711-776)||(21199607-21199672)
chr6 (706-784)||(8779558-8779637)
chr6 (710-776)||(21010858-21010924)
chr6 (643-761)||(12029043-12029156)
chr6 (711-750)||(7835355-7835394)
chr6 (333-416)||(21010384-21010469)
[»] chr2 (17 HSPs)
chr2 (711-776)||(13898529-13898594)
chr2 (711-776)||(14039146-14039211)
chr2 (711-776)||(19948591-19948656)
chr2 (711-784)||(38413437-38413511)
chr2 (713-784)||(3991817-3991889)
chr2 (335-438)||(37654850-37654955)
chr2 (711-784)||(41978881-41978955)
chr2 (333-439)||(28546222-28546330)
chr2 (337-439)||(37810365-37810469)
chr2 (711-776)||(43318744-43318809)
chr2 (714-784)||(33262897-33262968)
chr2 (670-784)||(24025892-24026007)
chr2 (712-776)||(37810867-37810931)
chr2 (721-784)||(45161126-45161190)
chr2 (546-681)||(28545913-28546046)
chr2 (732-784)||(35404323-35404376)
chr2 (709-773)||(38295698-38295763)
[»] chr8 (4 HSPs)
chr8 (712-776)||(33177831-33177895)
chr8 (353-439)||(4870637-4870725)
chr8 (718-768)||(4871099-4871149)
chr8 (333-439)||(33177340-33177445)
[»] chr7 (11 HSPs)
chr7 (724-776)||(6268554-6268606)
chr7 (713-784)||(19594254-19594326)
chr7 (336-439)||(1253984-1254089)
chr7 (711-776)||(14732277-14732342)
chr7 (711-776)||(34656658-34656723)
chr7 (720-784)||(21024110-21024175)
chr7 (204-260)||(37391899-37391955)
chr7 (333-439)||(6268969-6269076)
chr7 (719-776)||(35313610-35313667)
chr7 (719-776)||(38910534-38910591)
chr7 (702-776)||(1254440-1254515)
[»] chr3 (13 HSPs)
chr3 (711-778)||(29690682-29690749)
chr3 (711-776)||(9818547-9818612)
chr3 (711-776)||(49293856-49293921)
chr3 (720-776)||(37832625-37832681)
chr3 (707-761)||(30238473-30238528)
chr3 (711-757)||(47467394-47467440)
chr3 (711-776)||(40064331-40064396)
chr3 (706-773)||(33693312-33693380)
chr3 (706-768)||(19386869-19386930)
chr3 (200-262)||(43173614-43173676)
chr3 (628-681)||(2118337-2118390)
chr3 (333-402)||(9030557-9030626)
chr3 (719-776)||(27261446-27261503)
[»] chr4 (16 HSPs)
chr4 (711-784)||(54561263-54561337)
chr4 (712-776)||(26448684-26448748)
chr4 (711-784)||(51967321-51967395)
chr4 (721-784)||(9972817-9972881)
chr4 (711-784)||(8563342-8563417)
chr4 (706-784)||(29966374-29966453)
chr4 (719-776)||(6487311-6487368)
chr4 (711-776)||(23170716-23170781)
chr4 (333-439)||(40317131-40317238)
chr4 (333-439)||(40327205-40327312)
chr4 (706-773)||(50517249-50517317)
chr4 (711-750)||(41470320-41470359)
chr4 (715-777)||(21306294-21306356)
chr4 (719-784)||(40162833-40162898)
chr4 (720-784)||(26491117-26491182)
chr4 (712-784)||(56423961-56424034)
[»] chr1 (9 HSPs)
chr1 (711-784)||(33886842-33886916)
chr1 (711-784)||(33957334-33957408)
chr1 (711-783)||(42638016-42638088)
chr1 (711-784)||(34751554-34751628)
chr1 (711-776)||(34019193-34019258)
chr1 (711-784)||(1108417-1108491)
chr1 (335-384)||(2292726-2292775)
chr1 (721-784)||(7798565-7798629)
chr1 (706-784)||(42304476-42304556)
[»] scaffold0421 (1 HSPs)
scaffold0421 (711-776)||(1752-1817)
[»] scaffold0246 (1 HSPs)
scaffold0246 (711-784)||(1411-1486)


Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 333 - 783
Target Start/End: Complemental strand, 16801224 - 16800774
Alignment:
333 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaagttatggtcaacttaacaacaaaatataaaa 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
16801224 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaaattatggtcaacttaacaacaaaatacaaaa 16801125  T
433 ttaacttcataagttttttaagattctaacatgcgtcataatcttcaacgtcagaataatttgccaccactacaaccttaactgttgtgtgtttccgtgt 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
16801124 ttaacttcataagttttttaagattctaacatgcgtcataatcttcaacgtcagaataatttgccaccaccacaaccttaactgttgtgtgtttccgtgt 16801025  T
533 tcgtcttttgagaactcagagaagagaataacgttttagaatttcagaagaagtcaagtaatgtgttattttaattgcaatgacaacgtttcactacctt 632  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
16801024 tcgtcgtttcagaactcagagaagagtataacgttttagaatttcagaagaagtcaggtaatgtgttattttaattgcaatgacaacgtttcagtacctt 16800925  T
633 ggacttcaagaaagaattgggttttgcaagaaaatgggcccaaaataaatgaaatgttttatttaacggaaattcggtcgagtttaccgagtttaacatg 732  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16800924 ggacttcaagaaagaattgggttttgcaagaaaatgggcccaaaataaatgaaatgttttatttaacggaaattcggtcgagtttaccgagtttaacatg 16800825  T
733 tgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaaccgagtt 783  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
16800824 tgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaaccgagtt 16800774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 81 - 268
Target Start/End: Complemental strand, 16801474 - 16801289
Alignment:
81 ccaacaatatcaaggatataatcttttcaagttacgagtttgattttgactttattagcaattggttgcaaatatgcatattttgggttgcctttcaaaa 180  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16801474 ccaacaatagcaaggatataatcttttcaagttacgagtttgattttgactttattagcaattggttgcaaatatgcatattttgggttgcctttcaaaa 16801375  T
181 tcgagactctnnnnnnnggtttgcaactcgaaagtttacctcgactcattttatttatctacactcgaatcgtgaactcgtacaagtg 268  Q
    ||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
16801374 tcgagactctaaaaaa--gtttgcaactcgaaagtgtacctcgactcattttatttatctacactcgaatcgtgaactcgtacaagtg 16801289  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 333 - 439
Target Start/End: Complemental strand, 31914018 - 31913910
Alignment:
333 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa 430  Q
    ||||||| ||||||| ||| |||||||| |||||||||||  |||||||||||| ||||||| |||||  ||||||| | |||||| || ||||||| ||    
31914018 gcaaataagtcaatagtgcaaaatatgacttaattataaagacaaagtatacataaccaccataataaagagttatgtttaacttagcatcaaaatacaa 31913919  T
431 aattaactt 439  Q
    |||||||||    
31913918 aattaactt 31913910  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 719 - 784
Target Start/End: Original strand, 21238750 - 21238816
Alignment:
719 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  |||| ||| ||||||||||||    
21238750 ccgagtttaacatgtgttaactcggtcaaactcgtcaaactttccgattttaccaaaaaccgagttt 21238816  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 715 - 776
Target Start/End: Complemental strand, 29964215 - 29964155
Alignment:
715 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||| ||||||||||||||| | ||||||||| ||||||||||| |||||||||||||    
29964215 tttaccgaatttaacatgtgttaacttggtcaaacttgtcaaacattc-aatttcaccaaaa 29964155  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 715 - 776
Target Start/End: Original strand, 30010583 - 30010643
Alignment:
715 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||| ||||||||||||||| | ||||||||| ||||||||||| |||||||||||||    
30010583 tttaccgaatttaacatgtgttaacttggtcaaacttgtcaaacattc-aatttcaccaaaa 30010643  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 721 - 776
Target Start/End: Original strand, 16497729 - 16497784
Alignment:
721 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||||||  ||||||||||||||||||||||||||||||  |||||| |||||    
16497729 gagtttaacacatgttaagtcggtcaaactcgtcaaacattccgatttcagcaaaa 16497784  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 335 - 439
Target Start/End: Original strand, 31561447 - 31561553
Alignment:
335 aaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataaaa 432  Q
    ||||||||||||| | | |||||||| |||||||||||  |||||||||||| || |||| |||||  |||| |  ||||||||||| |||| || ||||    
31561447 aaataggtcaataatacaaaatatgacttaattataaagacaaagtatacataactaccataataaagagttgtcttcaacttaacatcaaattacaaaa 31561546  T
433 ttaactt 439  Q
    |||||||    
31561547 ttaactt 31561553  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 784
Target Start/End: Complemental strand, 19223128 - 19223054
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    ||||||| |||||||||||| ||||||| ||||| | ||||||||||| |||  |||||||| ||||||||||||    
19223128 cgagttttccgagtttaacacgtgttaactcggttacactcgtcaaactttccgatttcaccaaaaaccgagttt 19223054  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 776
Target Start/End: Original strand, 33892824 - 33892890
Alignment:
711 cgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||  |||||| |||||    
33892824 cgagtttacacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaa 33892890  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 716 - 776
Target Start/End: Original strand, 2675062 - 2675122
Alignment:
716 ttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||| ||   ||||||||||||    
2675062 ttaccgattttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaa 2675122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 34909708 - 34909636
Alignment:
713 agtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaa-accgagttt 784  Q
    |||||||||||||||||| | ||| | |||||||||||| |||||| |||  ||||||||||| |||||||||    
34909708 agtttaccgagtttaacacgcgttcactcggtcaaactcctcaaactttccgatttcaccaaagaccgagttt 34909636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 335 - 439
Target Start/End: Complemental strand, 36180145 - 36180038
Alignment:
335 aaataggtcaatattgcgaaatatgatttaattat-aaatgcaaagtatacatgaccaccaaaataaa--gttatggtcaacttaacaacaaaatataaa 431  Q
    ||||| ||||||| ||| |||||||| |||||||| ||| ||||||||||| ||| ||| | ||||||  |||||| |||||||| || ||| ||| |||    
36180145 aaatatgtcaatagtgcaaaatatgacttaattataaaaggcaaagtatacctgatcactataataaagcgttatgctcaacttagcatcaagatacaaa 36180046  T
432 attaactt 439  Q
    ||||||||    
36180045 attaactt 36180038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 4840959 - 4841028
Alignment:
335 aaataggtcaatattgcgaaatatgatttaattat-aaatgcaaagtatacatgaccaccaaaataaagt 403  Q
    ||||||||||||| ||| |||||||| |||||||| ||| ||||||||||||| || || | ||||||||    
4840959 aaataggtcaatagtgcaaaatatgacttaattataaaaggcaaagtatacataactacaataataaagt 4841028  T

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Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 711 - 776
Target Start/End: Original strand, 31996230 - 31996295
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
31996230 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 31996295  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 776
Target Start/End: Complemental strand, 21199672 - 21199607
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||| |||  ||||||||||||    
21199672 cgagtttaccgagtttaacacatgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 21199607  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 784
Target Start/End: Original strand, 8779558 - 8779637
Alignment:
706 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||| |||||||||||||||||||| | ||||| | ||||||||||||||||| |||  |||||||| ||||||||||||    
8779558 tcggacgagtttaccgagtttaacacgagttaacttggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 8779637  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 776
Target Start/End: Original strand, 21010858 - 21010924
Alignment:
710 tcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||||| ||||||| ||| || |||| ||||| |||||||||||||||| | ||||||||||||    
21010858 tcgagtttaacgagttttacacgtattaactcggttaaactcgtcaaacattttgatttcaccaaaa 21010924  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 643 - 761
Target Start/End: Complemental strand, 12029156 - 12029043
Alignment:
643 aaagaattgggttttgcaagaaaatgggcccaaaataaatgaaatgttttatttaacggaaattcggtcgagtttac-cgagtttaacatgtgttaagtc 741  Q
    ||||||||| |||||| ||||||||||  ||||||      ||||||||  || |||| ||| |||||||||||||| ||||||||| | ||||||| |     
12029156 aaagaattgagttttgaaagaaaatggatccaaaa------aaatgtttctttaaacgtaaactcggtcgagtttacacgagtttaatacgtgttaacta 12029063  T
742 ggtcaaactcgtcaaacatt 761  Q
     |||||||||||||||||||    
12029062 tgtcaaactcgtcaaacatt 12029043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 750
Target Start/End: Original strand, 7835355 - 7835394
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaact 750  Q
    |||||||||||||||||||| ||||||| |||||||||||    
7835355 cgagtttaccgagtttaacacgtgttaactcggtcaaact 7835394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 333 - 416
Target Start/End: Original strand, 21010384 - 21010469
Alignment:
333 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaactta 416  Q
    |||||||| |||||| ||| |||||||| ||||||||||   |||||||||||| || |||| |||||  ||||||| ||||||||    
21010384 gcaaatagatcaatagtgcaaaatatgacttaattataatgacaaagtatacataactaccataataaagagttatgttcaactta 21010469  T

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Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 711 - 776
Target Start/End: Complemental strand, 13898594 - 13898529
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
13898594 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 13898529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 711 - 776
Target Start/End: Complemental strand, 14039211 - 14039146
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
14039211 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 14039146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 711 - 776
Target Start/End: Complemental strand, 19948656 - 19948591
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
19948656 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 19948591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 711 - 784
Target Start/End: Original strand, 38413437 - 38413511
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
38413437 cgagtttatcgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 38413511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 3991889 - 3991817
Alignment:
713 agtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| ||   |||||||| ||||||||||||    
3991889 agtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagttt 3991817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 335 - 438
Target Start/End: Original strand, 37654850 - 37654955
Alignment:
335 aaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaa--gttatggtcaacttaacaacaaaatataaaa 432  Q
    |||||| |||||| | | |||||||| |||||||||||||||||||||||   |||||||  |||||   ||||| ||||||||||| ||||||| ||||    
37654850 aaatagttcaatagtacaaaatatgacttaattataaatgcaaagtataccaaaccaccattataaaatattatgctcaacttaacatcaaaatacaaaa 37654949  T
433 ttaact 438  Q
    ||||||    
37654950 ttaact 37654955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 784
Target Start/End: Complemental strand, 41978955 - 41978881
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca-ccaaaaccgagttt 784  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||| |||  |||||| | ||||||||||||    
41978955 cgagtttactgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagttt 41978881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 333 - 439
Target Start/End: Complemental strand, 28546330 - 28546222
Alignment:
333 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa 430  Q
    ||||||||||||||| ||  |||||||| |||||| |||| |||||  |||||| ||||||  |||||  ||||||| |||||||| || ||||||| ||    
28546330 gcaaataggtcaataatgtaaaatatgacttaattctaaaggcaaaacatacataaccaccttaataaagagttatgttcaacttagcatcaaaatacaa 28546231  T
431 aattaactt 439  Q
    |||||||||    
28546230 aattaactt 28546222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 337 - 439
Target Start/End: Original strand, 37810365 - 37810469
Alignment:
337 ataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaag--ttatggtcaacttaacaacaaaatataaaatt 434  Q
    ||||||||||||||  |||||||| |||||||||||  ||| |||||||| ||| ||  |||||||  ||| | ||||||||||| ||||||| ||||||    
37810365 ataggtcaatattgtaaaatatgacttaattataaagacaacgtatacataacccccgtaataaagaattacgttcaacttaacatcaaaatacaaaatt 37810464  T
435 aactt 439  Q
    |||||    
37810465 aactt 37810469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 711 - 776
Target Start/End: Original strand, 43318744 - 43318809
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||| |||  |||| |||||||    
43318744 cgagtttaccgagtttaacacatgttaactcggtcaaactcgtcaaactttccgattttaccaaaa 43318809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 714 - 784
Target Start/End: Complemental strand, 33262968 - 33262897
Alignment:
714 gtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||||||| || ||||||| || |||||||||||||||| |||  |||||||| ||||||||||||    
33262968 gtttaccgagtttaccacgtgttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 33262897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 670 - 784
Target Start/End: Complemental strand, 24026007 - 24025892
Alignment:
670 gcccaaaataaatgaaatgttttatttaacggaaattcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaattt 768  Q
    |||||||||||| ||| |||||| || || | ||| || |||||||| || ||||||||||| ||||||| || ||| || |||||||||||||| ||||    
24026007 gcccaaaataaaagaagtgtttt-ttaaatgtaaactcagtcgagttcacacgagtttaacacgtgttaactcagtccaattcgtcaaacattctgattt 24025909  T
769 cacc-aaaaccgagttt 784  Q
     ||| ||||||||||||    
24025908 taccaaaaaccgagttt 24025892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 712 - 776
Target Start/End: Original strand, 37810867 - 37810931
Alignment:
712 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||  |||||||||| ||||||  |||||||||||| ||||||||| | ||||||||||||    
37810867 gagtttattgagtttaacacgtgttagatcggtcaaactcatcaaacattatgatttcaccaaaa 37810931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 721 - 784
Target Start/End: Original strand, 45161126 - 45161190
Alignment:
721 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||| ||||||| |||||| |||||||||||| |||  |||||||| ||||||||||||    
45161126 gagtttaacacgtgttaactcggtcgaactcgtcaaactttccgatttcaccaaaaaccgagttt 45161190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 681
Target Start/End: Complemental strand, 28546046 - 28545913
Alignment:
546 actcagagaagagaataacgttttagaatttcagaagaagtcaagt-aatgtgttattttaattgcaatgacaacgtttcactaccttggacttcaagaa 644  Q
    ||||||||||||||| ||||| | ||  ||||| |||||| ||||  || ||||||| ||||||| || |||||||||||| ||||| ||  |  || ||    
28546046 actcagagaagagaagaacgtgtcagtctttcaaaagaag-caagacaacgtgttatgttaattgtaaagacaacgtttcagtacctaggcttgaaaaaa 28545948  T
645 agaattgggttttgcaagaaaatgggcccaaaataaa 681  Q
    |||||||||| ||| ||||||||||  ||||||||||    
28545947 agaattgggtattgaaagaaaatgg--ccaaaataaa 28545913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 732 - 784
Target Start/End: Original strand, 35404323 - 35404376
Alignment:
732 gtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    ||||||| ||||||||||||||||||| ||| ||||| ||| ||||||||||||    
35404323 gtgttaactcggtcaaactcgtcaaactttccaattttaccaaaaaccgagttt 35404376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 773
Target Start/End: Original strand, 38295698 - 38295763
Alignment:
709 gtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 773  Q
    ||||||||||| |||||||| |  ||||||| ||||||||||||||||||| |||| |||| ||||    
38295698 gtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttacca 38295763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 712 - 776
Target Start/End: Original strand, 33177831 - 33177895
Alignment:
712 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||||||  |||||||||||||    
33177831 gagtttaccgagtttaacacgtgttaactcagtcaaactcgtcaaacatttcaatttcaccaaaa 33177895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 439
Target Start/End: Original strand, 4870637 - 4870725
Alignment:
353 aaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataaaattaactt 439  Q
    ||||||||  ||||||||||  |||||||||||| ||||||| |||||  ||| ||| |||| |||||| ||||||| |||||||||||    
4870637 aaatatgacataattataaagacaaagtatacataaccaccataataaagagtaatgttcaatttaacatcaaaatagaaaattaactt 4870725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 718 - 768
Target Start/End: Original strand, 4871099 - 4871149
Alignment:
718 accgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaattt 768  Q
    |||||||||||||  |||||| ||||| ||||||||||||||| |||||||    
4871099 accgagtttaacacatgttaactcggttaaactcgtcaaacatactaattt 4871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 333 - 439
Target Start/End: Original strand, 33177340 - 33177445
Alignment:
333 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaagttatggtcaacttaacaacaaaatataaaa 432  Q
    ||||||||||||||  | | ||||| || |||||||||||  |||| ||||||| || |||| || | ||||||| |||||||| || ||||||| ||||    
33177340 gcaaataggtcaatgatacaaaataagacttaattataaagacaaaatatacataactaccataa-agagttatgttcaacttagcatcaaaatacaaaa 33177438  T
433 ttaactt 439  Q
    |||||||    
33177439 ttaactt 33177445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 724 - 776
Target Start/End: Complemental strand, 6268606 - 6268554
Alignment:
724 tttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
6268606 tttaacacgtgttaactcggtcaaactcgtcaaacattctaatttcaccaaaa 6268554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 19594326 - 19594254
Alignment:
713 agtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
19594326 agtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 19594254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 336 - 439
Target Start/End: Original strand, 1253984 - 1254089
Alignment:
336 aataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataaaat 433  Q
    |||||||||||| ||| |||||||| |||||||||||  |||||||||||| ||||||| | |||  ||||||| |||||||| ||  ||||||||||||    
1253984 aataggtcaatagtgcaaaatatgacttaattataaagacaaagtatacataaccaccatattaaagagttatgttcaacttagcacaaaaatataaaat 1254083  T
434 taactt 439  Q
     |||||    
1254084 gaactt 1254089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 776
Target Start/End: Original strand, 14732277 - 14732342
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  ||||||||||||    
14732277 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaa 14732342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 776
Target Start/End: Complemental strand, 34656723 - 34656658
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| ||   ||||||||||||    
34656723 cgagtttaccgagtttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaa 34656658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 720 - 784
Target Start/End: Complemental strand, 21024175 - 21024110
Alignment:
720 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
21024175 cgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 21024110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 37391899 - 37391955
Alignment:
204 caactcgaaagtttacctcgactcattttatttatctacactcgaatcgtgaactcg 260  Q
    |||||||| |||||||||| ||||||||||||||| || ||||||||||| ||||||    
37391899 caactcgagagtttacctcaactcattttatttatgtaaactcgaatcgtaaactcg 37391955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 439
Target Start/End: Complemental strand, 6269076 - 6268969
Alignment:
333 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa 430  Q
    ||||||||||||||| ||| |||||||| |||||||||||  ||| |||||| | |||| || |||||  ||||||  |||||||| || ||||||| ||    
6269076 gcaaataggtcaatagtgcaaaatatgacttaattataaagacaatgtatac-taaccatcataataaatagttattttcaacttagcatcaaaatacaa 6268978  T
431 aattaactt 439  Q
    |||||||||    
6268977 aattaactt 6268969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 776
Target Start/End: Complemental strand, 35313667 - 35313610
Alignment:
719 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||| ||||||| |||||||||||| |||||| |||  ||||||||||||    
35313667 ccgagtttaacacgtgttaactcggtcaaactcatcaaactttccgatttcaccaaaa 35313610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 776
Target Start/End: Complemental strand, 38910591 - 38910534
Alignment:
719 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||| ||||||| |||||||| |||||||||| |||  ||||||||||||    
38910591 ccgagtttaacacgtgttaactcggtcaatctcgtcaaactttccgatttcaccaaaa 38910534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 776
Target Start/End: Original strand, 1254440 - 1254515
Alignment:
702 aaattcggtcgagtttaccga-gtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||| | |||||| | |||||||| ||||||| |||||||||||| ||||||| ||  ||||||||||||    
1254440 aaattcggtcaaatttacctaagtttaacacgtgttaactcggtcaaactcatcaaacagtccgatttcaccaaaa 1254515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 711 - 778
Target Start/End: Complemental strand, 29690749 - 29690682
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaacc 778  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||| ||||||| ||||||| ||||||    
29690749 cgagtttaccaagtttaacacgtgttaactcggtcaaactcgtcatacattctgatttcacaaaaacc 29690682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 776
Target Start/End: Original strand, 9818547 - 9818612
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  ||||||||||||    
9818547 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaa 9818612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 776
Target Start/End: Complemental strand, 49293921 - 49293856
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
49293921 cgagtttaccgaatttaacacgtgttaattcggtcaaactcgtcaaactttccgatttcaccaaaa 49293856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 720 - 776
Target Start/End: Complemental strand, 37832681 - 37832625
Alignment:
720 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||    
37832681 cgagtttaacacgtgttaactcggtcaaactcgtcaaactttctgatttcaccaaaa 37832625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 707 - 761
Target Start/End: Original strand, 30238473 - 30238528
Alignment:
707 cggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacatt 761  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
30238473 cggtcgagtttactcgagtttaacatgtgttaattcggtcaaactcatcaaacatt 30238528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 757
Target Start/End: Original strand, 47467394 - 47467440
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaa 757  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||    
47467394 cgagtttaccaagtttaacacgtgttaactcggtcaaactcgtcaaa 47467440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 776
Target Start/End: Complemental strand, 40064396 - 40064331
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||||||||||| ||||||| | ||||||| ||||||||| ||   ||||||||||||    
40064396 cgagtttaccgagtttaacacgtgttaacttggtcaaattcgtcaaacttttcgatttcaccaaaa 40064331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 706 - 773
Target Start/End: Complemental strand, 33693380 - 33693312
Alignment:
706 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 773  Q
    |||||||||||||| |||||||| |  ||||||| ||||||||||||||||||| |||| |||| ||||    
33693380 tcggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttacca 33693312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 706 - 768
Target Start/End: Original strand, 19386869 - 19386930
Alignment:
706 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaattt 768  Q
    ||||||||||||||  ||||||||| ||||||| |||||||||||| ||| |||||| |||||    
19386869 tcggtcgagtttacgaagtttaacacgtgttaactcggtcaaactc-tcagacattccaattt 19386930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 43173676 - 43173614
Alignment:
200 tttgcaactcgaaagtttacctcgactcattttatttatctacactcgaatcgtgaactcgta 262  Q
    |||||||||||| |||||||||| |||| |||||||||  || |||||| ||| |||||||||    
43173676 tttgcaactcgagagtttacctcaactcgttttatttaggtaaactcgactcgagaactcgta 43173614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 681
Target Start/End: Original strand, 2118337 - 2118390
Alignment:
628 accttggacttcaagaaagaattgggttttgcaagaaaatgggcccaaaataaa 681  Q
    ||||||||||| || |||||||||||||||| ||||||||   |||||||||||    
2118337 accttggacttgaaaaaagaattgggttttgaaagaaaataaacccaaaataaa 2118390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 402
Target Start/End: Original strand, 9030557 - 9030626
Alignment:
333 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataaag 402  Q
    ||||||| ||||||| | | |||||||| ||||||| |||  |||||||||||| ||||||| |||||||    
9030557 gcaaatatgtcaataattcaaaatatgacttaattacaaagacaaagtatacataaccaccataataaag 9030626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 776
Target Start/End: Complemental strand, 27261503 - 27261446
Alignment:
719 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||| ||||||| || |||||| ||||||||| |||  ||||||||||||    
27261503 ccgagtttaacacgtgttaactcagtcaaattcgtcaaactttccgatttcaccaaaa 27261446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 711 - 784
Target Start/End: Complemental strand, 54561337 - 54561263
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||||||||||||| ||||||| |||||||||| |||||||| |||  |||||||| ||||||||||||    
54561337 cgagtttaccgagtttaacacgtgttaactcggtcaaacacgtcaaactttccgatttcaccaaaaaccgagttt 54561263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 712 - 776
Target Start/End: Complemental strand, 26448748 - 26448684
Alignment:
712 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||| |||  ||||||||||||    
26448748 gagtttaccgagtttaacgcgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 26448684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 784
Target Start/End: Complemental strand, 51967395 - 51967321
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||| ||   |||||||| ||||||||||||    
51967395 cgagtttaccgaatttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagttt 51967321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 721 - 784
Target Start/End: Complemental strand, 9972881 - 9972817
Alignment:
721 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||| ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
9972881 gagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 9972817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 711 - 784
Target Start/End: Original strand, 8563342 - 8563417
Alignment:
711 cgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttca-ccaaaaccgagttt 784  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||  |||||| | ||||||||||||    
8563342 cgagtttacacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagttt 8563417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 706 - 784
Target Start/End: Original strand, 29966374 - 29966453
Alignment:
706 tcggtcgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||| ||||||||||||||||||||  |||||| ||||||||||||||| ||| ||   |||||||| ||||||||||||    
29966374 tcggacgagtttaccgagtttaacacatgttaactcggtcaaactcgtcgaacttttcgatttcaccaaaaaccgagttt 29966453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 776
Target Start/End: Original strand, 6487311 - 6487368
Alignment:
719 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||| ||||| | ||||||||||||||||||| |||  ||||||||||||    
6487311 ccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaa 6487368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 776
Target Start/End: Original strand, 23170716 - 23170781
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||| |||||||||||  |||||| ||||||||||||||||||| ||   ||||||||||||    
23170716 cgagtttatcgagtttaacacatgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaa 23170781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 439
Target Start/End: Original strand, 40317131 - 40317238
Alignment:
333 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa 430  Q
    ||||||||||||||| ||| |||||| | |||||||||||  ||||| |||||| ||||| | |||||  ||||||| ||||||||  | ||||||| ||    
40317131 gcaaataggtcaatagtgcaaaatataacttaattataaa-acaaagcatacataaccactataataaatagttatgttcaacttagaatcaaaatacaa 40317229  T
431 aattaactt 439  Q
    |||||||||    
40317230 aattaactt 40317238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 439
Target Start/End: Original strand, 40327205 - 40327312
Alignment:
333 gcaaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatacatgaccaccaaaataa--agttatggtcaacttaacaacaaaatataa 430  Q
    ||||||||||||||| ||| |||||| | |||||||||||  ||||| |||||| ||||| | |||||  ||||||| ||||||||  | ||||||| ||    
40327205 gcaaataggtcaatagtgcaaaatataacttaattataaa-acaaagcatacataaccactataataaatagttatgttcaacttagaatcaaaatacaa 40327303  T
431 aattaactt 439  Q
    |||||||||    
40327304 aattaactt 40327312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 706 - 773
Target Start/End: Complemental strand, 50517317 - 50517249
Alignment:
706 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca 773  Q
    |||||||||||||| |||||||| |  ||||||| ||||||||||||||||||| ||| ||||| ||||    
50517317 tcggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttccaattttacca 50517249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 750
Target Start/End: Original strand, 41470320 - 41470359
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaact 750  Q
    |||||||||||||||||||| ||||||| |||||||||||    
41470320 cgagtttaccgagtttaacacgtgttaactcggtcaaact 41470359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 777
Target Start/End: Original strand, 21306294 - 21306356
Alignment:
715 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaac 777  Q
    |||||||||||||||| ||||||| |||  |||| ||||||||| |||| ||||||| |||||    
21306294 tttaccgagtttaacacgtgttaactcgaccaaattcgtcaaactttctgatttcactaaaac 21306356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 784
Target Start/End: Complemental strand, 40162898 - 40162833
Alignment:
719 ccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    ||||||||| || ||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
40162898 ccgagttta-cacgtgttaactcggtcaaactcgtcaaactttccgatttcaccgaaaaccgagttt 40162833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 784
Target Start/End: Original strand, 26491117 - 26491182
Alignment:
720 cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 784  Q
    |||||||| ||  |||||| ||||||||||||||||||| |||| |||| |||| |||||||||||    
26491117 cgagtttaccaaatgttaactcggtcaaactcgtcaaaccttctgattttaccagaaaccgagttt 26491182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 784
Target Start/End: Original strand, 56423961 - 56424034
Alignment:
712 gagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcac-caaaaccgagttt 784  Q
    |||||||||||||||||||  |||||| | |||||||||| |||||| |||  |||||||  ||||||||||||    
56423961 gagtttaccgagtttaacacatgttaacttggtcaaactcatcaaactttccgatttcactaaaaaccgagttt 56424034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 711 - 784
Target Start/End: Original strand, 33886842 - 33886916
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||    
33886842 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 33886916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 711 - 784
Target Start/End: Complemental strand, 33957408 - 33957334
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||    
33957408 cgagtttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 33957334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 711 - 783
Target Start/End: Original strand, 42638016 - 42638088
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaaccgagtt 783  Q
    |||||||||| | || ||||  ||||||||||||||||||| ||||||||||| ||||||| |||||||||||    
42638016 cgagtttaccaaattaaacacatgttaagtcggtcaaactcatcaaacattctgatttcacaaaaaccgagtt 42638088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 784
Target Start/End: Original strand, 34751554 - 34751628
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||||||||||||| ||||||| ||||||||||| | ||||| |||  |||||||| ||||||||||||    
34751554 cgagtttaccgagtttaacacgtgttaactcggtcaaacttggcaaactttccgatttcaccaaaaaccgagttt 34751628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 711 - 776
Target Start/End: Complemental strand, 34019258 - 34019193
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||||||| ||||||| ||||||| |||||||| |||||||||| |||  ||||||||||||    
34019258 cgagtttaccgaatttaacacgtgttaactcggtcaacctcgtcaaactttccgatttcaccaaaa 34019193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 784
Target Start/End: Complemental strand, 1108491 - 1108417
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||| ||||||||||| | ||||| || |||||||||||||||| |||  |||||||| ||||||||||||    
1108491 cgagtttatcgagtttaacacgcgttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 1108417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 2292726 - 2292775
Alignment:
335 aaataggtcaatattgcgaaatatgatttaattataaatgcaaagtatac 384  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||| |||||    
2292726 aaataggtcaatattgcaaaatatgacttaattacaaatgcaaactatac 2292775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 721 - 784
Target Start/End: Complemental strand, 7798629 - 7798565
Alignment:
721 gagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacc-aaaaccgagttt 784  Q
    |||||||||| ||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||    
7798629 gagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagttt 7798565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 706 - 784
Target Start/End: Original strand, 42304476 - 42304556
Alignment:
706 tcggtcgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcacca-aaaccgagttt 784  Q
    |||||||||||||| |||||||| |  ||||||| |||||||||||||| |||| ||| ||||| |||| |||||||||||    
42304476 tcggtcgagtttacacgagtttacctagtgttaactcggtcaaactcgttaaaccttccaattttaccagaaaccgagttt 42304556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 711 - 776
Target Start/End: Complemental strand, 1817 - 1752
Alignment:
711 cgagtttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcaccaaaa 776  Q
    |||||||| | ||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
1817 cgagtttaacaagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaa 1752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 784
Target Start/End: Complemental strand, 1486 - 1411
Alignment:
711 cgagtttac-cgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcac-caaaaccgagttt 784  Q
    ||||||||| ||||||||||| ||||||| ||||| ||||||||||||| |||  |||||||  ||||||||||||    
1486 cgagtttacacgagtttaacacgtgttaactcggttaaactcgtcaaactttccgatttcactaaaaaccgagttt 1411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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