View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0680_low_10 (Length: 338)

Name: NF0680_low_10
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0680_low_10
NF0680_low_10
[»] chr8 (2 HSPs)
chr8 (127-219)||(30049252-30049344)
chr8 (127-215)||(7162205-7162293)
[»] chr7 (1 HSPs)
chr7 (127-219)||(39949832-39949924)
[»] chr5 (1 HSPs)
chr5 (127-219)||(196671-196763)
[»] chr4 (1 HSPs)
chr4 (127-219)||(3945506-3945598)
[»] chr3 (1 HSPs)
chr3 (127-219)||(22365134-22365226)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 30049252 - 30049344
Alignment:
Q  127 tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049252 tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 30049344  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 7162205 - 7162293
Alignment:
Q  127 tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaaga 215  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7162205 tgaatcatatacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaactgccaaaaatccaattcaacatggaaga 7162293  T

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Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 39949924 - 39949832
Alignment:
Q  127 tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39949924 tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 39949832  T

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Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 196763 - 196671
Alignment:
Q  127 tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  196763 tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 196671  T

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Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 3945506 - 3945598
Alignment:
Q  127 tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945506 tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 3945598  T

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Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 22365134 - 22365226
Alignment:
Q  127 tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22365134 tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaa 22365226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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