View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0680_low_11 (Length: 337)

Name: NF0680_low_11
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0680_low_11
NF0680_low_11
[»] scaffold0090 (1 HSPs)
scaffold0090 (85-306)||(18033-18254)
[»] chr3 (26 HSPs)
chr3 (85-274)||(24192820-24193009)
chr3 (95-276)||(9534203-9534382)
chr3 (85-276)||(14762758-14762948)
chr3 (85-274)||(20247791-20247979)
chr3 (95-277)||(23370505-23370686)
chr3 (85-274)||(38310802-38310990)
chr3 (95-300)||(16801444-16801647)
chr3 (193-287)||(41455087-41455178)
chr3 (162-277)||(24933828-24933941)
chr3 (95-193)||(55499185-55499283)
chr3 (215-276)||(18929239-18929300)
chr3 (212-276)||(17240513-17240577)
chr3 (222-277)||(13302240-13302295)
chr3 (222-277)||(13323787-13323842)
chr3 (261-306)||(24122228-24122273)
chr3 (222-277)||(12033444-12033499)
chr3 (222-277)||(13312896-13312951)
chr3 (222-277)||(17131732-17131787)
chr3 (222-277)||(51301589-51301644)
chr3 (262-300)||(18127695-18127733)
chr3 (262-300)||(18135465-18135503)
chr3 (261-306)||(13967769-13967814)
chr3 (261-306)||(13973244-13973289)
chr3 (262-290)||(14543478-14543506)
chr3 (262-290)||(16829104-16829132)
chr3 (262-290)||(16837626-16837654)
[»] chr5 (14 HSPs)
chr5 (95-306)||(38144507-38144716)
chr5 (85-281)||(22751006-22751201)
chr5 (95-276)||(28370055-28370234)
chr5 (95-276)||(19512261-19512441)
chr5 (162-281)||(23528573-23528690)
chr5 (212-276)||(18407944-18408008)
chr5 (221-300)||(22438723-22438803)
chr5 (212-276)||(23111200-23111264)
chr5 (221-306)||(42961566-42961651)
chr5 (261-306)||(1856452-1856497)
chr5 (261-306)||(21674422-21674467)
chr5 (222-277)||(19236900-19236955)
chr5 (224-277)||(22461158-22461211)
chr5 (224-277)||(22467782-22467835)
[»] scaffold0025 (1 HSPs)
scaffold0025 (85-274)||(14398-14587)
[»] scaffold0247 (1 HSPs)
scaffold0247 (100-326)||(11221-11446)
[»] scaffold0026 (2 HSPs)
scaffold0026 (85-287)||(11840-12041)
scaffold0026 (95-277)||(111561-111741)
[»] chr6 (23 HSPs)
chr6 (88-322)||(18800305-18800538)
chr6 (95-287)||(10986170-10986361)
chr6 (95-276)||(23839073-23839253)
chr6 (88-276)||(4477725-4477912)
chr6 (85-276)||(23057803-23057993)
chr6 (85-300)||(29614124-29614337)
chr6 (142-287)||(930085-930229)
chr6 (162-300)||(12168305-12168440)
chr6 (162-300)||(19785847-19785982)
chr6 (162-300)||(19878398-19878533)
chr6 (162-287)||(19287214-19287337)
chr6 (162-300)||(19884174-19884309)
chr6 (192-277)||(34639986-34640069)
chr6 (212-277)||(34646660-34646725)
chr6 (221-326)||(24512794-24512899)
chr6 (85-274)||(21565214-21565402)
chr6 (212-277)||(25469704-25469767)
chr6 (212-277)||(31252413-31252478)
chr6 (224-276)||(9187498-9187550)
chr6 (220-276)||(25348486-25348542)
chr6 (220-274)||(25598643-25598697)
chr6 (220-276)||(25397172-25397228)
chr6 (220-276)||(19471335-19471391)
[»] chr7 (27 HSPs)
chr7 (88-280)||(14422852-14423043)
chr7 (85-281)||(18873225-18873420)
chr7 (85-276)||(15168040-15168230)
chr7 (85-287)||(12709833-12710033)
chr7 (85-287)||(13122904-13123104)
chr7 (85-272)||(10895795-10895981)
chr7 (95-276)||(16009452-16009631)
chr7 (85-287)||(13743574-13743774)
chr7 (162-287)||(12590633-12590756)
chr7 (162-287)||(13007374-13007497)
chr7 (166-274)||(16677239-16677348)
chr7 (166-274)||(17651475-17651584)
chr7 (221-326)||(21230910-21231015)
chr7 (221-276)||(11382871-11382926)
chr7 (221-276)||(11389348-11389403)
chr7 (221-300)||(20311026-20311107)
chr7 (213-276)||(13679485-13679548)
chr7 (221-305)||(148619-148703)
chr7 (222-277)||(2971254-2971309)
chr7 (222-277)||(20906461-20906516)
chr7 (222-276)||(11311059-11311113)
chr7 (241-282)||(831628-831669)
chr7 (241-282)||(1196808-1196849)
chr7 (262-319)||(14945066-14945123)
chr7 (262-319)||(15372659-15372716)
chr7 (241-282)||(34958578-34958619)
chr7 (220-276)||(46625961-46626017)
[»] scaffold0029 (1 HSPs)
scaffold0029 (85-300)||(111746-111960)
[»] chr2 (17 HSPs)
chr2 (107-300)||(26583715-26583904)
chr2 (95-276)||(6483593-6483772)
chr2 (95-276)||(6487060-6487239)
chr2 (88-276)||(19661454-19661640)
chr2 (95-274)||(23878883-23879060)
chr2 (162-277)||(5706023-5706137)
chr2 (85-274)||(23089057-23089245)
chr2 (95-276)||(23101463-23101643)
chr2 (212-276)||(23265133-23265197)
chr2 (212-276)||(23280201-23280265)
chr2 (215-276)||(21908353-21908414)
chr2 (262-306)||(6260142-6260186)
chr2 (220-276)||(24661576-24661632)
chr2 (222-277)||(10577-10632)
chr2 (222-277)||(25180929-25180984)
chr2 (269-306)||(19665044-19665081)
chr2 (177-286)||(26885139-26885246)
[»] chr1 (12 HSPs)
chr1 (95-276)||(20437024-20437204)
chr1 (162-300)||(41111977-41112112)
chr1 (212-276)||(32651563-32651627)
chr1 (212-276)||(18712790-18712854)
chr1 (221-276)||(19663517-19663572)
chr1 (220-276)||(20805320-20805376)
chr1 (221-276)||(11158093-11158148)
chr1 (220-274)||(10811785-10811839)
chr1 (222-277)||(20851132-20851187)
chr1 (222-277)||(20857759-20857814)
chr1 (222-277)||(21706276-21706331)
chr1 (222-277)||(21710818-21710873)
[»] scaffold0553 (1 HSPs)
scaffold0553 (95-277)||(10195-10376)
[»] scaffold0544 (1 HSPs)
scaffold0544 (95-277)||(1525-1706)
[»] chr8 (15 HSPs)
chr8 (95-277)||(44477498-44477678)
chr8 (95-277)||(44492656-44492836)
chr8 (86-287)||(23866481-23866680)
chr8 (95-274)||(8727735-8727913)
chr8 (162-287)||(17054533-17054656)
chr8 (95-306)||(27940822-27941034)
chr8 (212-276)||(23482053-23482117)
chr8 (220-276)||(18614271-18614327)
chr8 (221-326)||(14056514-14056619)
chr8 (221-326)||(25111976-25112081)
chr8 (220-276)||(39364919-39364975)
chr8 (222-276)||(29643386-29643440)
chr8 (222-277)||(24320670-24320725)
chr8 (261-306)||(30765880-30765925)
chr8 (220-276)||(21931696-21931752)
[»] scaffold1773 (1 HSPs)
scaffold1773 (85-284)||(1044-1240)
[»] scaffold0924 (1 HSPs)
scaffold0924 (136-287)||(740-892)
[»] scaffold0006 (1 HSPs)
scaffold0006 (85-284)||(50045-50241)
[»] scaffold0154 (1 HSPs)
scaffold0154 (107-326)||(30743-30962)
[»] scaffold0058 (1 HSPs)
scaffold0058 (135-300)||(206-368)
[»] chr4 (12 HSPs)
chr4 (85-287)||(8045822-8046022)
chr4 (85-300)||(11847972-11848191)
chr4 (162-277)||(53483646-53483760)
chr4 (221-326)||(15408139-15408244)
chr4 (220-276)||(8834895-8834951)
chr4 (220-276)||(13888641-13888697)
chr4 (222-274)||(14486661-14486713)
chr4 (220-276)||(15245215-15245271)
chr4 (220-271)||(22724691-22724742)
chr4 (262-298)||(1650182-1650219)
chr4 (241-282)||(15747551-15747592)
chr4 (220-276)||(15308120-15308176)
[»] scaffold0117 (2 HSPs)
scaffold0117 (85-287)||(1887-2087)
scaffold0117 (85-287)||(8564-8764)
[»] scaffold0796 (2 HSPs)
scaffold0796 (162-282)||(1727-1845)
scaffold0796 (162-282)||(5750-5868)
[»] scaffold0456 (4 HSPs)
scaffold0456 (210-281)||(920-991)
scaffold0456 (210-281)||(8065-8136)
scaffold0456 (85-130)||(854-899)
scaffold0456 (85-130)||(7999-8044)
[»] scaffold0476 (1 HSPs)
scaffold0476 (85-274)||(3295-3484)
[»] scaffold0107 (1 HSPs)
scaffold0107 (221-326)||(40482-40587)
[»] scaffold0129 (1 HSPs)
scaffold0129 (164-283)||(45268-45386)
[»] scaffold0077 (1 HSPs)
scaffold0077 (95-274)||(3624-3802)
[»] scaffold0019 (1 HSPs)
scaffold0019 (221-326)||(135473-135578)
[»] scaffold0235 (1 HSPs)
scaffold0235 (223-326)||(22543-22646)
[»] scaffold0310 (1 HSPs)
scaffold0310 (221-300)||(17643-17723)
[»] scaffold0222 (1 HSPs)
scaffold0222 (212-276)||(16811-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (212-276)||(116887-116951)
[»] scaffold0461 (1 HSPs)
scaffold0461 (212-276)||(8-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (212-276)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (212-276)||(101928-101992)
[»] scaffold0124 (1 HSPs)
scaffold0124 (221-276)||(34276-34331)
[»] scaffold0815 (1 HSPs)
scaffold0815 (225-287)||(1453-1515)
[»] scaffold0138 (1 HSPs)
scaffold0138 (220-276)||(12296-12352)
[»] scaffold2054 (1 HSPs)
scaffold2054 (224-287)||(717-780)
[»] scaffold0317 (1 HSPs)
scaffold0317 (213-276)||(1378-1441)
[»] scaffold0139 (2 HSPs)
scaffold0139 (221-276)||(14997-15052)
scaffold0139 (262-300)||(26892-26930)
[»] scaffold0261 (1 HSPs)
scaffold0261 (222-287)||(23559-23624)
[»] scaffold0790 (1 HSPs)
scaffold0790 (255-287)||(5487-5519)
[»] scaffold0348 (2 HSPs)
scaffold0348 (262-326)||(14604-14668)
scaffold0348 (222-277)||(9336-9391)
[»] scaffold0096 (1 HSPs)
scaffold0096 (220-280)||(39503-39563)
[»] scaffold0001 (1 HSPs)
scaffold0001 (222-286)||(493019-493082)
[»] scaffold0127 (1 HSPs)
scaffold0127 (222-277)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (222-277)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (222-276)||(1913-1967)
[»] scaffold0067 (3 HSPs)
scaffold0067 (262-300)||(46708-46746)
scaffold0067 (262-290)||(55733-55761)
scaffold0067 (262-290)||(62119-62147)
[»] scaffold0609 (1 HSPs)
scaffold0609 (212-277)||(5857-5922)
[»] scaffold0249 (1 HSPs)
scaffold0249 (269-306)||(2219-2256)
[»] scaffold0335 (1 HSPs)
scaffold0335 (220-276)||(2628-2684)
[»] scaffold0005 (1 HSPs)
scaffold0005 (262-290)||(266108-266136)


Alignment Details
Target: scaffold0090 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 85 - 306
Target Start/End: Original strand, 18033 - 18254
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatca-tcaaccctaa 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||    
T  18033 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgttagaatcatcattaaaccttaa 18132  T
Q  184 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgc 283  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18133 ccctcaatttattttcctaaagcta-agcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttgc 18231  T
Q  284 agaagaattacacagcacaatcg 306  Q
    ||||  |||||||| ||||||||    
T  18232 agaatgattacacaacacaatcg 18254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 85 - 274
Target Start/End: Original strand, 24192820 - 24193009
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  24192820 cagcaacagcatagattaagttttcattctgaacatcacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 24192918  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 274  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24192919 accctcaatttatcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 95 - 276
Target Start/End: Original strand, 9534203 - 9534382
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||  |||||||||||||||| ||||||||||||||||    
T  9534203 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattccactcagaatcatcatcaaaccctaaccctcaattt 9534301  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9534302 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 85 - 276
Target Start/End: Complemental strand, 14762948 - 14762758
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  14762948 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 14762850  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  14762849 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 20247979 - 20247791
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  | ||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  20247979 cagcagcaacaaagattaagttttcattctgaacattatattacaagaa-aattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 20247881  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 274  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20247880 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 95 - 277
Target Start/End: Complemental strand, 23370686 - 23370505
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  23370686 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 23370588  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  23370587 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 38310990 - 38310802
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  38310990 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 38310892  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 274  Q
    ||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  38310891 accctcaatttatcttccaaaa-ctat-gcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 95 - 300
Target Start/End: Complemental strand, 16801647 - 16801444
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattac-catttcccgtcagaatcatcatcaaccctaaccctcaattt 193  Q
    ||||||||||  ||||||||  |||||||||||||  || | ||||||||| |||||| |  ||| | ||| |||||||||||||||||||| |||||||    
T  16801647 ataggttaagaattcattctaaacatcacattacag-catatttaacatgatcattacaccattctcctcaaaatcatcatcaaccctaaccttcaattt 16801549  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaatta 293  Q
      | | |||||||||  ||||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  16801548 tatcttcaaaagctaa-gcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttaccttagttttgcagaaggatta 16801451  T
Q  294 cacagca 300  Q
    |||||||    
T  16801450 cacagca 16801444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 41455178 - 41455087
Alignment:
Q  193 tattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 287  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41455178 tattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 24933941 - 24933828
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| ||||||   |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  24933941 tcagaatcatcatcaaaccctaattttcatattattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 24933845  T
Q  261 tctcacccttaccttag 277  Q
    |||||||||||||||||    
T  24933844 tctcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 55499283 - 55499185
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaattt 193  Q
    |||| ||||| |||||||| | |||||||||||||| || ||||||||||| |||||||  ||||| |||||||||||||| ||||||||||||||||||    
T  55499283 atagattaagatttcattccgaacatcacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaattt 55499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  215 ttaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||| | |||||||||||| | ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||| | |||||||||||| | ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 24122273 - 24122228
Alignment:
Q  261 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  24122273 tctcacccttaccttagttttgcagaaagattaaacagcacaatcg 24122228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    |||||||| |||||| | |||||||||||| | ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||| | ||||||||||||   ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 300
Target Start/End: Complemental strand, 18127733 - 18127695
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaattacacagca 300  Q
    |||||||||||||||||||||||||| || |||||||||    
T  18127733 ctcacccttaccttagttttgcagaaaaaatacacagca 18127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 300
Target Start/End: Complemental strand, 18135503 - 18135465
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaattacacagca 300  Q
    |||||||||||||||||||||||||| || |||||||||    
T  18135503 ctcacccttaccttagttttgcagaaaaaatacacagca 18135465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 13967814 - 13967769
Alignment:
Q  261 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    |||||||||||||||||||||||||||  || | ||||||||||||    
T  13967814 tctcacccttaccttagttttgcagaaagataaaacagcacaatcg 13967769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 13973289 - 13973244
Alignment:
Q  261 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    |||||||||||||||||||||||||||  || | ||||||||||||    
T  13973289 tctcacccttaccttagttttgcagaaagataaaacagcacaatcg 13973244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 14543506 - 14543478
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaa 290  Q
    |||||||||||||||||||||||||||||    
T  14543506 ctcacccttaccttagttttgcagaagaa 14543478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 16829132 - 16829104
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaa 290  Q
    |||||||||||||||||||||||||||||    
T  16829132 ctcacccttaccttagttttgcagaagaa 16829104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 16837654 - 16837626
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaa 290  Q
    |||||||||||||||||||||||||||||    
T  16837654 ctcacccttaccttagttttgcagaagaa 16837626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 95 - 306
Target Start/End: Complemental strand, 38144716 - 38144507
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| |||||||||  ||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||||||||||    
T  38144716 atagattaagttttcattctaaacattacattacaat-agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 38144618  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaatta 293  Q
    |||||||||||  |  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||    
T  38144617 attttccaaaa--ttatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaatgatta 38144520  T
Q  294 cacagcacaatcg 306  Q
    |||||||||||||    
T  38144519 cacagcacaatcg 38144507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 22751006 - 22751201
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  22751006 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 22751104  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 281  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  22751105 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 95 - 276
Target Start/End: Complemental strand, 28370234 - 28370055
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  28370234 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 28370136  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28370135 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 95 - 276
Target Start/End: Original strand, 19512261 - 19512441
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| || ||||||  ||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  19512261 atagattaagttttcattctaaacattacgttacaat-agaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 19512359  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19512360 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 162 - 281
Target Start/End: Original strand, 23528573 - 23528690
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  23528573 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 23528669  T
Q  261 tctcacccttaccttagtttt 281  Q
    |||||||||||||||||||||    
T  23528670 tctcacccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 22438803 - 22438723
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttag-ttttgcagaagaattacacagca 300  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||  ||| |||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaaagattgcacagca 22438723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 42961566 - 42961651
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    |||||||||||||| ||| ||||| || ||| |  | ||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacagcacaatcg 42961651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 1856497 - 1856452
Alignment:
Q  261 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  1856497 tctcacccttaccttagttttgcagaaagattaaacagcacaatcg 1856452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 21674467 - 21674422
Alignment:
Q  261 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||    
T  21674467 tctcacccttaccttagttttgcagaaagattaaacagcacaatcg 21674422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  224 ttttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  224 ttttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 14587 - 14398
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    |||||||| ||||| |||||||||||||| | |||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  14587 cagcaacagcatagattaagttttcattcggaacatcacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 14489  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 274  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14488 accctcaatttatcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 100 - 326
Target Start/End: Original strand, 11221 - 11446
Alignment:
Q  100 ttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatt-tattt 197  Q
    ||||| ||||||| || |||||||||||||| |||||||||||||| ||||||   |||||  ||||||||||||||| ||||||||||||||| |||||    
T  11221 ttaagatttcattttgaacatcacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattt 11319  T
Q  198 tccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacaca 297  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  11320 tccaaaa-ctaa-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaaggattacaca 11417  T
Q  298 gcacaatcgtttaataggctctcctctct 326  Q
    ||| ||||| ||  |||||||| ||||||    
T  11418 gcaaaatcggttcctaggctcttctctct 11446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 85 - 287
Target Start/End: Complemental strand, 12041 - 11840
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||||||||| || |||||||||||||||| | || | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  12041 cagcaacaacaaagattaagttttcattctgaagattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 11943  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    || ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11942 actctcaatttattttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 11845  T
Q  283 cagaa 287  Q
    |||||    
T  11844 cagaa 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 95 - 277
Target Start/End: Original strand, 111561 - 111741
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||||||||||    
T  111561 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 111659  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  111660 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 88 - 322
Target Start/End: Original strand, 18800305 - 18800538
Alignment:
Q  88 caacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccc 186  Q
    |||||| |||| ||||| ||||||| || |||||||||||||| |||||||||||||| ||||||   |||||  ||||||||||||||| |||||||||    
T  18800305 caacaatatagattaagatttcattttgaacatcacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccc 18800403  T
Q  187 tcaatt-tattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcag 285  Q
    |||||| |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  18800404 tcaattctattttccaaaa-ctaa-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcag 18800501  T
Q  286 aagaattacacagcacaatcgtttaataggctctcct 322  Q
    ||| ||||||||||| ||||| ||  |||||||||||    
T  18800502 aaggattacacagcaaaatcggttcctaggctctcct 18800538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 95 - 287
Target Start/End: Complemental strand, 10986361 - 10986170
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||||||||||    
T  10986361 atagattaagttttcattctgaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 10986263  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 287  Q
    || |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||||    
T  10986262 atcttccaaaaactat-gcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 95 - 276
Target Start/End: Original strand, 23839073 - 23839253
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||| || ||||  ||||| | |||||||||||||| ||||||||||||||||    
T  23839073 atagattaagttttcattctgaacattacattacaa-cagaattaacatgatcaatacccattccccttagaatcatcatcaaaccctaaccctcaattt 23839171  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    || |||||||  |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23839172 atcttccaaacactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 88 - 276
Target Start/End: Original strand, 4477725 - 4477912
Alignment:
Q  88 caacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccc 186  Q
    |||||| |||| |||||||||||||||  |||| ||||||||| |||||||| ||||| || ||||  ||||| |||||||||||||||| |||||||||    
T  4477725 caacaatatagattaagttttcattctaaacattacattacaa-cagaattagcatgatcaatacccattcccctcagaatcatcatcaaaccctaaccc 4477823  T
Q  187 tcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
     |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4477824 acaatttatcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 276
Target Start/End: Original strand, 23057803 - 23057993
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  23057803 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 23057901  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  23057902 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 300
Target Start/End: Complemental strand, 29614337 - 29614124
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||||||||| || |||||||||||||||  ||||  || |||||  ||||||||||||| ||||||| ||||||| ||| |||||||||||| |||||    
T  29614337 cagcaacaacaaagattaagttttcattctaaacatt-caatacaag-agaattaacatgatcattacccatttcccttcataatcatcatcaaacccta 29614240  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||||||||||||||| | |||  ||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29614239 accctcaatttatttttccaaaattat-gcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 29614141  T
Q  283 cagaagaattacacagca 300  Q
    ||||| ||||| ||||||    
T  29614140 cagaa-aattagacagca 29614124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 930229 - 930085
Alignment:
Q  142 atgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattataga 240  Q
    |||| |||||||  ||||| |||||| ||||||||| ||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||| ||||||    
T  930229 atgatcattacccattcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaa-ctata-caattaggtcaattttcagaaactataga 930132  T
Q  241 ttatgattattaagagatagtctcacccttaccttagttttgcagaa 287  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  930131 ttatgattattgagagatagtctcacccttaccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 162 - 300
Target Start/End: Original strand, 12168305 - 12168440
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 12168401  T
Q  261 tctcacccttaccttagttttgcagaagaattacacagca 300  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  12168402 tctcacccttaccttagttttgcagaa-aattagacagca 12168440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 162 - 300
Target Start/End: Complemental strand, 19785982 - 19785847
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  ||| |||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaa-ctatt-caactaggtcaattt-cagaaattatagattatgattattgagagatag 19785886  T
Q  261 tctcacccttaccttagttttgcagaagaattacacagca 300  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  19785885 tctcacccttaccttagttttgcagaa-aattagacagca 19785847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 162 - 300
Target Start/End: Original strand, 19878398 - 19878533
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19878494  T
Q  261 tctcacccttaccttagttttgcagaagaattacacagca 300  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  19878495 tctcacccttaccttagttttgcagaa-aattagacagca 19878533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 19287214 - 19287337
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19287310  T
Q  261 tctcacccttaccttagttttgcagaa 287  Q
    |||||||||||||||||||||||||||    
T  19287311 tctcacccttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 162 - 300
Target Start/End: Original strand, 19884174 - 19884309
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19884270  T
Q  261 tctcacccttaccttagttttgcagaagaattacacagca 300  Q
    ||||||||| ||||||||||||||||| ||||| ||||||    
T  19884271 tctcaccctaaccttagttttgcagaa-aattagacagca 19884309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  192 ttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  34640069 ttattttccaaaa-ctatt-caattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 34646725 - 34646660
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  34646725 caattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 326
Target Start/End: Complemental strand, 24512899 - 24512794
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 320  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||| |||||||||  ||| ||||||| ||||| ||  ||||||||     
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaaagattgcacagcaaaatcggttcctaggctctt 24512800  T
Q  321 ctctct 326  Q
    ||||||    
T  24512799 ctctct 24512794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 21565402 - 21565214
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaa 183  Q
    ||||||||  |||| ||||| |||||||| | || ||||||||||| || ||||||||||| |||||||  ||||| | |||||||||||| ||||||||    
T  21565402 cagcaacagtatagattaagatttcattccgaacgtcacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaa 21565304  T
Q  184 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattaagagatagtctcacccttacct 274  Q
    |||||||||  || |||  ||| |   |||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  21565303 ccctcaatt--ttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 25469767 - 25469704
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  25469767 caattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 31252413 - 31252478
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||| | ||||||||||||||||| ||||| || ||||| ||||| |||||||||||||||||    
T  31252413 caattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  224 ttttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 274  Q
    |||||||||||||| |||| |||||||| ||| |||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||||| |||||||| ||  |||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||| |||||||| ||  |||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 88 - 280
Target Start/End: Original strand, 14422852 - 14423043
Alignment:
Q  88 caacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccc 186  Q
    |||||| |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| |||||||||    
T  14422852 caacaatatagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccc 14422950  T
Q  187 tcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttt 280  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14422951 tcaatttatcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 18873225 - 18873420
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  18873225 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 18873323  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 281  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  18873324 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 85 - 276
Target Start/End: Original strand, 15168040 - 15168230
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  15168040 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 15168138  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  15168139 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 287
Target Start/End: Complemental strand, 12710033 - 12709833
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||||||||| || ||||||||  |||||| |||| | |||||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| |||||    
T  12710033 cagcaacaaca-agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaacccta 12709935  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  12709934 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttg 12709838  T
Q  283 cagaa 287  Q
    |||||    
T  12709837 cagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 287
Target Start/End: Complemental strand, 13123104 - 13122904
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||||||||| || ||||||||  |||||| |||| | |||||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| |||||    
T  13123104 cagcaacaaca-agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaacccta 13123006  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  13123005 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttg 13122909  T
Q  283 cagaa 287  Q
    |||||    
T  13122908 cagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 85 - 272
Target Start/End: Complemental strand, 10895981 - 10895795
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaa 183  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| || ||||  ||||| |||||||||||||||| ||||||    
T  10895981 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaa 10895883  T
Q  184 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttac 272  Q
    ||| |||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  10895882 cccacaatttatcttccaaaaactat-gcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 95 - 276
Target Start/End: Original strand, 16009452 - 16009631
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaaccct-aaccctcaattt 193  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||| ||||| ||||||    
T  16009452 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccttaacccacaattt 16009550  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    || |||||||| |   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16009551 atcttccaaaacca--tgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 85 - 287
Target Start/End: Original strand, 13743574 - 13743774
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    |||||| ||||||| |||||| |||| |||| ||| || | |||||  | ||||||||||| ||||||| ||||| | ||| |||||||||||| |||||    
T  13743574 cagcaataacatagattaagtcttcaatctgaacagcataatacaagaa-aattaacatgatcattacccatttctcttcataatcatcatcaaacccta 13743672  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  13743673 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttg 13743769  T
Q  283 cagaa 287  Q
    |||||    
T  13743770 cagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 12590756 - 12590633
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  12590756 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 12590660  T
Q  261 tctcacccttaccttagttttgcagaa 287  Q
    |||||||||||||||||||||||||||    
T  12590659 tctcacccttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 13007374 - 13007497
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 13007470  T
Q  261 tctcacccttaccttagttttgcagaa 287  Q
    |||||||||||||||||||||||||||    
T  13007471 tctcacccttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 16677239 - 16677348
Alignment:
Q  166 aatcatcatcaa-ccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtct 263  Q
    |||||||||||| |||||||||| ||||| || |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  16677239 aatcatcatcaaaccctaacccttaattttatcttccaaaaactat-gcaattaggtcaatttttagaaattatagattatgattattgagagatagtct 16677337  T
Q  264 cacccttacct 274  Q
    |||||||||||    
T  16677338 cacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 17651475 - 17651584
Alignment:
Q  166 aatcatcatcaa-ccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtct 263  Q
    |||||||||||| |||||||||| ||||| || |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  17651475 aatcatcatcaaaccctaacccttaattttatcttccaaaaactat-gcaattaggtcaatttttagaaattatagattatgattattgagagatagtct 17651573  T
Q  264 cacccttacct 274  Q
    |||||||||||    
T  17651574 cacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 326
Target Start/End: Complemental strand, 21231015 - 21230910
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 320  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||  ||| ||||||| ||||| ||  ||||||||     
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttcctaggctctt 21230916  T
Q  321 ctctct 326  Q
    ||||||    
T  21230915 ctctct 21230910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 20311107 - 20311026
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttag--ttttgcagaagaattacacagca 300  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||  ||||||||||  ||| |||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaaagattgcacagca 20311026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  213 aattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||| |||||||||| |||||||| || ||||| ||| | ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 148619 - 148703
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatc 305  Q
    |||||||||||||  ||| ||||| || ||| |  | ||| ||||||||||||||||||||||||||  |||||||| |||||||    
T  148619 caattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgattacacaacacaatc 148703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||| ||||||| || | ||| |||||| ||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  241 ttatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  241 ttatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 14945123 - 14945066
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctct 319  Q
    |||||||||||||||| |||||||||||| | ||||||| ||||| ||  ||||||||    
T  14945123 ctcacccttaccttagatttgcagaagaaatgcacagcaaaatcggttcctaggctct 14945066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 15372716 - 15372659
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctct 319  Q
    |||||||||||||||| |||||||||||| | ||||||| ||||| ||  ||||||||    
T  15372716 ctcacccttaccttagatttgcagaagaaatgcacagcaaaatcggttcctaggctct 15372659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  241 ttatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||| ||||||||| ||||| || ||| |||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 85 - 300
Target Start/End: Original strand, 111746 - 111960
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  111746 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 111844  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 281  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  111845 accctcaatttatcttccaaaa-ctat-gcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 111942  T
Q  282 gcagaagaattacacagca 300  Q
    |||||| ||||| ||||||    
T  111943 gcagaa-aattagacagca 111960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 107 - 300
Target Start/End: Original strand, 26583715 - 26583904
Alignment:
Q  107 ttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaag 205  Q
    ||||||||| ||||||| |||||| || | ||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||     
T  26583715 ttcattctgaacatcactttacaa-catatttaacatgatcattaccctttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaa- 26583812  T
Q  206 ctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagca 300  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  26583813 ctat-gcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa-aattagacagca 26583904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 95 - 276
Target Start/End: Original strand, 6483593 - 6483772
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  6483593 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 6483691  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6483692 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 95 - 276
Target Start/End: Original strand, 6487060 - 6487239
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  6487060 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 6487158  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6487159 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 276
Target Start/End: Complemental strand, 19661640 - 19661454
Alignment:
Q  88 caacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccc 186  Q
    |||||| |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| |||||||||    
T  19661640 caacaatatagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccc 19661542  T
Q  187 tcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  19661541 tcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 95 - 274
Target Start/End: Original strand, 23878883 - 23879060
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccat-ttcccgtcagaatcatcatcaaccctaaccctcaattt 193  Q
    |||| ||||| |||||||||| |||||||||||||| || ||||||||||| |||||||   ||||| |||||||||||| |||||||||||||||||||    
T  23878883 atagattaagatttcattctgaacatcacattacaa-cataattaacatgatcattaccccattcccctcagaatcatcaacaaccctaaccctcaattt 23878981  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 274  Q
    |   |||  ||| |   |||||||||||||||||  ||||||||| || || |||| | ||||||||||||||||||||||    
T  23878982 a--atcctcaaggttaagcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 5706137 - 5706023
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| ||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| |||||||||||||||||| | ||||||||    
T  5706137 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattaatgagagatag 5706040  T
Q  261 tctcacccttaccttag 277  Q
    |||||||||||||||||    
T  5706039 tctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 23089245 - 23089057
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaa 183  Q
    ||||||||  |||| ||||| |||||||| | || ||||||||||| || ||||||||||| |||||||  ||||| | |||||||||||| ||||||||    
T  23089245 cagcaacagtatagattaagatttcattccgaacgtcacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaa 23089147  T
Q  184 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattaagagatagtctcacccttacct 274  Q
    |||||||||  || |||  ||| |   |||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  23089146 ccctcaatt--ttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 276
Target Start/End: Complemental strand, 23101643 - 23101463
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaattt 193  Q
    |||| ||||| |||||||| | || ||||||||||| || ||||||||||| |||||||  ||||| |||||||||||||| |||||||||||||||||     
T  23101643 atagattaagatttcattccgaacgtcacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatt- 23101546  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattaagagatagtctcacccttacctta 276  Q
     || |||  ||| |    ||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||||    
T  23101545 -ttatcctcaaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  215 ttaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 6260186 - 6260142
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  6260186 ctcacccttaccttagttttgcagaatgattacacagcacaatcg 6260142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||||| |||||||| ||  |||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 19665081 - 19665044
Alignment:
Q  269 ttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    |||||||||||||||||||  |||||||||||||||||    
T  19665081 ttaccttagttttgcagaatgattacacagcacaatcg 19665044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 26885139 - 26885246
Alignment:
Q  177 accctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||  |||||||| || ||||| | ||||| || |||| | ||||||||||||||||| |||| ||||||| | ||||| || |||||||||||||    
T  26885139 accctaattctcaattttttctccaagaactattcca-ttagattaattttcagaaattatacatta-gattattgaaagataatcccacccttacctta 26885236  T
Q  277 gttttgcaga 286  Q
    |  |||||||    
T  26885237 gaattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 276
Target Start/End: Complemental strand, 20437204 - 20437024
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||| |||| ||||||||| || ||||||||||| || ||||  ||||| |||||||||||||||| ||||||||||||||||    
T  20437204 atagattaagttttcattctgaacattacattacaa-cataattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 20437106  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20437105 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 162 - 300
Target Start/End: Original strand, 41111977 - 41112112
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 41112073  T
Q  261 tctcacccttaccttagttttgcagaagaattacacagca 300  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  41112074 tctcacccttaccttagttttgcagaa-aattagacagca 41112112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 274  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 95 - 277
Target Start/End: Complemental strand, 10376 - 10195
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  10376 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 10278  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  10277 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 95 - 277
Target Start/End: Complemental strand, 1706 - 1525
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  1706 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 1608  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  1607 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 95 - 277
Target Start/End: Original strand, 44477498 - 44477678
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  44477498 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 44477596  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44477597 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 95 - 277
Target Start/End: Original strand, 44492656 - 44492836
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  44492656 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 44492754  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44492755 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 86 - 287
Target Start/End: Original strand, 23866481 - 23866680
Alignment:
Q  86 agcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaa 183  Q
    |||||||||| || ||||||||  |||||| |||| | |||||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| ||||||    
T  23866481 agcaacaaca-agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaa 23866579  T
Q  184 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgc 283  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  23866580 ccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgc 23866676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 95 - 274
Target Start/End: Complemental strand, 8727913 - 8727735
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 193  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||| || ||||  | ||| ||||||||||| |||| ||||||||||||||||    
T  8727913 atagattaagttttcattctgaacattacattacaa-cagaattaacatgatcaatacccatacccctcagaatcatcgtcaaaccctaaccctcaattt 8727815  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacct 274  Q
    || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  8727814 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 17054533 - 17054656
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 17054629  T
Q  261 tctcacccttaccttagttttgcagaa 287  Q
    ||||||||||||||| |||||||||||    
T  17054630 tctcacccttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 95 - 306
Target Start/End: Complemental strand, 27941034 - 27940822
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatt- 192  Q
    |||| |||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||  | |||||     
T  27941034 atagattaaattttcattctgaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaattcccaattc 27940936  T
Q  193 -tattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaat 291  Q
     |||||| ||| | | |||  ||| |   |||||||||||||| ||| ||||| || ||| |  | ||| ||||||||||||||||||||||||||  ||    
T  27940935 ttatttttcaagaacaattctaatcaaa-caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaatgat 27940837  T
Q  292 tacacagcacaatcg 306  Q
    |||||||||||||||    
T  27940836 tacacagcacaatcg 27940822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 18614271 - 18614327
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 326
Target Start/End: Complemental strand, 14056619 - 14056514
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 320  Q
    |||||||||||| ||| | | ||| |||||| ||||||||||||||||||||||||| |||||||||  ||| |||| || ||||| ||  ||||||||     
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaaagattgcacaacaaaatcggttcctaggctctt 14056520  T
Q  321 ctctct 326  Q
    ||||||    
T  14056519 ctctct 14056514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 25111976 - 25112081
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 320  Q
    |||||||||||| ||| | | ||| |||||| ||||||||||||||||||||||||| |||| ||||  ||| |||| || ||||| ||  ||||||||     
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaaagattgcacaacaaaatcggtttctaggctctt 25112075  T
Q  321 ctctct 326  Q
    ||||||    
T  25112076 ctctct 25112081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||| | |||||||||||| | ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 30765925 - 30765880
Alignment:
Q  261 tctcacccttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    |||||||||||||||||||||||||||  || | ||||||||||||    
T  30765925 tctcacccttaccttagttttgcagaaagataaaacagcacaatcg 30765880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||| ||||| ||||| || ||| |||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 284
Target Start/End: Original strand, 1044 - 1240
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||||||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| ||| |||| ||||||| |||||    
T  1044 cagcaacaaca-agattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcataatcctcatcaaacccta 1141  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1142 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttg 1238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 136 - 287
Target Start/End: Complemental strand, 892 - 740
Alignment:
Q  136 attaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaa 233  Q
    |||| ||||| ||||||| ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  892 attatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactat-gcaattaggtcaattttcagaaa 794  T
Q  234 ttatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 287  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  793 ttatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 284
Target Start/End: Original strand, 50045 - 50241
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    ||||||||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| ||| |||| ||||||| |||||    
T  50045 cagcaacaaca-agattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcataatcctcatcaaacccta 50142  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50143 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttg 50239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 107 - 326
Target Start/End: Original strand, 30743 - 30962
Alignment:
Q  107 ttcattctggacatcacattacaaacagaattaacatgaccattac-catttcccgtcagaatcatcatcaa-ccctaaccctcaattt-attttccaaa 203  Q
    ||||||||| ||||||| |||||| || | ||||||||| | |||| |  ||||| ||| |||||||||||| |||||| ||||||||| |  |||||||    
T  30743 ttcattctgcacatcactttacaa-catatttaacatgatcgttacaccattcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaa 30841  T
Q  204 agctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaa 303  Q
    | |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  30842 a-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaaggattacacagcaaaa 30939  T
Q  304 tcgtttaataggctctcctctct 326  Q
    ||| ||  |||||||||||||||    
T  30940 tcgattcctaggctctcctctct 30962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 135 - 300
Target Start/End: Original strand, 206 - 368
Alignment:
Q  135 aattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaa 233  Q
    ||||||||||| |||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  206 aattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagaaa 302  T
Q  234 ttatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagca 300  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  303 ttatagattatggttattgagagatagtctcacccttaccttagttttgcagaa-aattagacagca 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 287
Target Start/End: Complemental strand, 8046022 - 8045822
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 182  Q
    |||||||||||  | |||||||||||||||| |||| | |||||||  ||||||||||| | | ||||| ||||||| |||||||  || |||| |||||    
T  8046022 cagcaacaacaaggattaagttttcattctgaacattatattacaag-agaattaacattatctttacccatttcccttcagaattctcgtcaaacccta 8045924  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  8045923 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 8045827  T
Q  283 cagaa 287  Q
    |||||    
T  8045826 cagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 300
Target Start/End: Original strand, 11847972 - 11848191
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcc-cgtcagaatcatcatcaa-cccta 182  Q
    ||||||||||| || |||||||||||||||| |||| | |||| ||| || |||||||||| |||||||  |||| | |||||||| ||||||| |||||    
T  11847972 cagcaacaacaaagattaagttttcattctgaacattatattataaa-aggattaacatgatcattacccattcctcttcagaatcgtcatcaaacccta 11848070  T
Q  183 accctcaatttattttc------caaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||||| |||||       ||||| |||| || | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  11848071 accctcaattgattttaatttttcaaaa-ctat-gccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 11848168  T
Q  277 gttttgcagaagaattacacagca 300  Q
    ||||||||||| ||||| ||||||    
T  11848169 gttttgcagaa-aattagacagca 11848191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 162 - 277
Target Start/End: Original strand, 53483646 - 53483760
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| ||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  53483646 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 53483743  T
Q  261 tctcacccttaccttag 277  Q
    |||||||||||||||||    
T  53483744 tctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 15408139 - 15408244
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 320  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| | |||||||  ||| ||||| | ||||| ||  ||||||||     
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaaagattgcacagaaaaatcggttcctaggctctt 15408238  T
Q  321 ctctct 326  Q
    ||||||    
T  15408239 ctctct 15408244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttacct 274  Q
    ||||||||||||||||| |||||||| ||| |  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||||| |||| ||| ||| |||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcaccctta 271  Q
    |||||||||||||||| || | ||| |||||| |||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 1650219 - 1650182
Alignment:
Q  262 ctcacccttaccttagttttgcag-aagaattacacag 298  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1650219 ctcacccttaccttagttttgcagaaagaattacacag 1650182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  241 ttatgattattaagagatagtctcacccttaccttagttttg 282  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||||| |||| ||| ||| |||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 85 - 287
Target Start/End: Complemental strand, 2087 - 1887
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaa 183  Q
    |||||||||||  | ||||||||||||| || |||| | |||||||  ||||||||||| | |||||||  ||||  ||| |||||||||||| ||||||    
T  2087 cagcaacaacaaggattaagttttcattatgaacattaaattacaag-agaattaacataatcattacccattcca-tcaaaatcatcatcaaaccctaa 1990  T
Q  184 ccctcaatttattttccaaaagctattgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    ||||||| ||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  1989 ccctcaaattattttccaaaa-ctata-caattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttg 1892  T
Q  283 cagaa 287  Q
    |||||    
T  1891 cagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 85 - 287
Target Start/End: Complemental strand, 8764 - 8564
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaa 183  Q
    |||||||||||  | ||||||||||||| || |||| | |||||||  ||||||||||| | |||||||  ||||  ||| |||||||||||| ||||||    
T  8764 cagcaacaacaaggattaagttttcattttgaacattaaattacaag-agaattaacataatcattacccattcca-tcataatcatcatcaaaccctaa 8667  T
Q  184 ccctcaatttattttccaaaagctattgcaattaggtcaatttt-cagaaattatagattatgattattaagagatagtctcacccttaccttagttttg 282  Q
    ||||||| ||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  8666 ccctcaaattattttccaaaa-ctata-caattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttg 8569  T
Q  283 cagaa 287  Q
    |||||    
T  8568 cagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 1845 - 1727
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 1749  T
Q  261 tctcacccttaccttagttttg 282  Q
    ||||||||||||||||||||||    
T  1748 tctcacccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 5868 - 5750
Alignment:
Q  162 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatag 260  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 5772  T
Q  261 tctcacccttaccttagttttg 282  Q
    ||||||||||||||||||||||    
T  5771 tctcacccttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 920 - 991
Alignment:
Q  210 tgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 281  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  920 tgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 8065 - 8136
Alignment:
Q  210 tgcaattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagtttt 281  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  8065 tgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 854 - 899
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaa 130  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||    
T  854 cagcaacaacacagattaagttttcattctgaacatcacattacaa 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 7999 - 8044
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaa 130  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||    
T  7999 cagcaacaacacagattaagttttcattctgaacatcacattacaa 8044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 3484 - 3295
Alignment:
Q  85 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatga-ccattaccatttcccgtcagaatcatcatc-aacccta 182  Q
    ||||||||  |||| ||||| |||||||||| |||||||||||| |||| |||||||||||  |||||||  ||||| |||||||||||||| |||||||    
T  3484 cagcaacagtatagattaagatttcattctgaacatcacattac-aacaaaattaacatgattcattacccattcccctcagaatcatcatcaaacccta 3386  T
Q  183 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattaagagatagtctcacccttacct 274  Q
    ||||||||||  || |||  ||| |   |||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  3385 accctcaatt--ttatccccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 326
Target Start/End: Complemental strand, 40587 - 40482
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 320  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||  ||| ||||||| ||||| ||  ||||||||     
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttcctaggctctt 40488  T
Q  321 ctctct 326  Q
    ||||||    
T  40487 ctctct 40482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 164 - 283
Target Start/End: Complemental strand, 45386 - 45268
Alignment:
Q  164 agaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattaagagatagtc 262  Q
    |||||||||||||| ||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattattgagagatagtc 45289  T
Q  263 tcacccttaccttagttttgc 283  Q
    ||||||||||||||| |||||    
T  45288 tcacccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 274
Target Start/End: Complemental strand, 3802 - 3624
Alignment:
Q  95 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaattt 193  Q
    |||| ||||| |||||||| | |||||||||||||| || ||||||||||| |||||||  | ||| |||||||||||||| |||||||||||||||||     
T  3802 atagattaagatttcattccgaacatcacattacaa-cataattaacatgatcattacccatccccctcagaatcatcatcaaaccctaaccctcaatt- 3705  T
Q  194 attttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattaagagatagtctcacccttacct 274  Q
     || |||  ||| |   |||||||||||||||||| ||||||| | |||||  |||| | ||||||||||||||||||||||    
T  3704 -ttatcctcaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 135473 - 135578
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctc 320  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| ||| |||||  ||| ||||||| ||||| ||  ||||||||     
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaaagattgcacagcaaaatcggttcttaggctctt 135572  T
Q  321 ctctct 326  Q
    ||||||    
T  135573 ctctct 135578  T

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Target: scaffold0235 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 22646 - 22543
Alignment:
Q  223 attttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctcct 322  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||||||||| | |||||||||  ||| ||||||| ||||| ||  |||||||| ||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaaatattgcacagcaaaatcggttcctaggctcttct 22547  T
Q  323 ctct 326  Q
    ||||    
T  22546 ctct 22543  T

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Target: scaffold0310 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 17643 - 17723
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttaccttag-ttttgcagaagaattacacagca 300  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||  ||| |||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaaagattgcacagca 17723  T

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Target: scaffold0222 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

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Target: scaffold0004 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

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Target: scaffold0461 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

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Target: scaffold0020 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||| ||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

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Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  225 tttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 287  Q
    |||||||||||||| |||| ||| ||| |||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

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Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||||| |||||||| ||| |||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 717 - 780
Alignment:
Q  224 ttttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 287  Q
    ||||||||||||||| |||| ||| ||| | ||||| || ||||||||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcagaa 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  213 aattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||| |||||||||| |||||||| || ||||| ||| | ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  221 caattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 26892 - 26930
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaattacacagca 300  Q
    |||||||||||||||||||||||||| || |||||||||    
T  26892 ctcacccttaccttagttttgcagaaaaaatacacagca 26930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 23624 - 23559
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcagaa 287  Q
    ||||||||||||||||| |||||||| ||| | ||||| || ||||||||||||||  ||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcagaa 23559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 5487 - 5519
Alignment:
Q  255 agatagtctcacccttaccttagttttgcagaa 287  Q
    |||||||||||||||||||||||||||||||||    
T  5487 agatagtctcacccttaccttagttttgcagaa 5519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 14668 - 14604
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaattacacagcacaatcgtttaataggctctcctctct 326  Q
    |||||||||||||||| |||||||||  ||| ||||||| ||||| || ||||||||| ||||||    
T  14668 ctcacccttaccttagatttgcagaaagattgcacagcaaaatcggttcataggctcttctctct 14604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttt 280  Q
    ||||||||| ||||||||| |||||||| ||| |||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 493082 - 493019
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttagttttgcaga 286  Q
    ||||||||||||||||| |||| ||||||| | ||||| |||||||||||||||||  |||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||| | ||||||||||||   ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||||||||||||| ||||||| |||| | ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  222 aattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||||||| ||||||| |||| | ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 300
Target Start/End: Complemental strand, 46746 - 46708
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaattacacagca 300  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  46746 ctcacccttaccttagttttgcagaagaaatgcacagca 46708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 55761 - 55733
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaa 290  Q
    |||||||||||||||||||||||||||||    
T  55761 ctcacccttaccttagttttgcagaagaa 55733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 62147 - 62119
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaa 290  Q
    |||||||||||||||||||||||||||||    
T  62147 ctcacccttaccttagttttgcagaagaa 62119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 5922 - 5857
Alignment:
Q  212 caattaggtcaattttcagaaattatagattatgattattaagagatagtctcacccttaccttag 277  Q
    ||||||| | ||||||||||||||||| ||||| || ||| | ||||| || ||||||||||||||    
T  5922 caattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 2256 - 2219
Alignment:
Q  269 ttaccttagttttgcagaagaattacacagcacaatcg 306  Q
    |||||||||||||||||||  |||||||||||||||||    
T  2256 ttaccttagttttgcagaatgattacacagcacaatcg 2219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  220 tcaattttcagaaattatagattatgattattaagagatagtctcacccttacctta 276  Q
    ||||||||||||| ||||| ||||| || ||| |||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 266108 - 266136
Alignment:
Q  262 ctcacccttaccttagttttgcagaagaa 290  Q
    |||||||||||||||||||||||||||||    
T  266108 ctcacccttaccttagttttgcagaagaa 266136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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