View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0680_low_12 (Length: 315)

Name: NF0680_low_12
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0680_low_12
NF0680_low_12
[»] chr5 (1 HSPs)
chr5 (80-315)||(42578947-42579181)
[»] scaffold0703 (1 HSPs)
scaffold0703 (85-208)||(1863-1986)
[»] chr1 (3 HSPs)
chr1 (85-208)||(12460971-12461094)
chr1 (102-192)||(13190525-13190615)
chr1 (146-274)||(20127338-20127466)
[»] chr6 (1 HSPs)
chr6 (85-208)||(16861010-16861133)
[»] chr2 (1 HSPs)
chr2 (132-315)||(646195-646378)
[»] scaffold0010 (1 HSPs)
scaffold0010 (236-313)||(239030-239107)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 80 - 315
Target Start/End: Original strand, 42578947 - 42579181
Alignment:
Q  80 gatggacatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggat 179  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  42578947 gatgcacatcatcatccaatttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccaacttacgctatcgaagactttggat 42579046  T
Q  180 atatcaagtttcaaggcaatctcacctttgttccccttagttttgcagcgcatggtgtgaaggatttcaaaagccgttagagcattgtccatgatggatc 279  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42579047 atatcaagtttcaaggcaatctcacctttgtt-cccttagttttgcagcgcatggtgtgaaggatttcaaatgccgttagagcattgtccatgatggatc 42579145  T
Q  280 ttgagtggacaaaggctgcctgctccggagatatcc 315  Q
    ||||||||| ||||||||||||||| ||||||||||    
T  42579146 ttgagtggaaaaaggctgcctgctctggagatatcc 42579181  T

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Target: scaffold0703 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 1863 - 1986
Alignment:
Q  85 acatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatc 184  Q
    |||||||||||||  ||||||||| ||||||||| |||| |||   ||||||  |||| |  ||||||||||| || || || || ||||||||||||||    
T  1863 acatcatcatccaagttacccattgagaacaaaaacccaacttttcaagaataacttgaagataagaccagctgacactgtcaaatgctttggatatatc 1962  T
Q  185 aagtttcaaggcaatctcaccttt 208  Q
    ||||||||| |||| |||||||||    
T  1963 aagtttcaaagcaacctcaccttt 1986  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 12460971 - 12461094
Alignment:
Q  85 acatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatc 184  Q
    |||||||||||||  ||||||||| ||||||||| |||| |||   ||||||  |||| |  ||||||||||| || || || || ||||||||||||||    
T  12460971 acatcatcatccaagttacccattgagaacaaaaacccaacttttcaagaataacttgaagataagaccagctgacactgtcaaatgctttggatatatc 12461070  T
Q  185 aagtttcaaggcaatctcaccttt 208  Q
    ||||||||| |||| |||||||||    
T  12461071 aagtttcaaagcaacctcaccttt 12461094  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 13190525 - 13190615
Alignment:
Q  102 acccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatcaagtttca 192  Q
    |||||||  |||||||||||||||||   |||||| ||||  | ||| |||||||||| |||||| || ||||| ||||||||||||||||    
T  13190525 acccattgtgaacaaaatcccatcttagtaagaatagcttcgaggtatgaccagcttatgctatcaaaagcttttgatatatcaagtttca 13190615  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 20127466 - 20127338
Alignment:
Q  146 gtaagaccagcttacgctatcgaaggctttggatatatcaagtttcaaggcaatctcacctttgttccccttagttttgcagcgcatggtgtgaaggatt 245  Q
    ||||| ||| ||||| ||||| || || ||||||||||||||||| |  || | ||| ||| | ||||| || ||||||||||||||    || |||| |    
T  20127466 gtaaggccaacttacactatcaaatgccttggatatatcaagttttagtgccacctcgcctattttcccttttgttttgcagcgcatatgatggaggact 20127367  T
Q  246 tcaaaagccgttagagcattgtccatgat 274  Q
    |||||||| ||||| ||||| ||||||||    
T  20127366 tcaaaagcggttagcgcattatccatgat 20127338  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 16861133 - 16861010
Alignment:
Q  85 acatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatc 184  Q
    |||||||||||||  ||| ||||| ||||||||| |||| |||   |||||| ||||| |  ||||||||||| || || || || ||||||||||| ||    
T  16861133 acatcatcatccaagttatccattgagaacaaaaacccaacttttcaagaatagcttgaagataagaccagctgacactgtcaaatgctttggatatgtc 16861034  T
Q  185 aagtttcaaggcaatctcaccttt 208  Q
    ||||||||| |||| |||||||||    
T  16861033 aagtttcaaagcaacctcaccttt 16861010  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 315
Target Start/End: Complemental strand, 646378 - 646195
Alignment:
Q  132 agaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatcaagtttcaaggcaatctcacctttgttccccttagttttgcagcgca 231  Q
    |||||||||| ||  |||||||| ||||| |||||  ||||||| |||||||| || ||||||||||  || ||    || || || ||||||||  |||    
T  646378 agaattgcttatagataagaccaacttacactatcacaggcttttgatatatcgagcttcaaggcaacttcgccagctttaccttttgttttgcaatgca 646279  T
Q  232 tggtgtgaaggatttcaaaagccgttagagcattgtccatgatggatcttgagtggacaaaggctgcctgctccggagatatcc 315  Q
    ||  |||||| |||||| |||| || |||||||| ||||||||||| | |||||| |  || |||||||||||||| |||||||    
T  646278 tgtggtgaagaatttcataagctgtgagagcattatccatgatggagcgtgagtgaatgaaagctgcctgctccggtgatatcc 646195  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 239030 - 239107
Alignment:
Q  236 gtgaaggatttcaaaagccgttagagcattgtccatgatggatcttgagtggacaaaggctgcctgctccggagatat 313  Q
    |||||| |||||||| || | ||||||||| |||||||||||||| ||  | ||||||||||| ||||| | ||||||    
T  239030 gtgaagaatttcaaaggctgatagagcattatccatgatggatctagatggaacaaaggctgcttgctcggaagatat 239107  T

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