View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0680_low_15 (Length: 306)
Name: NF0680_low_15
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0680_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5487686 - 5487907
Alignment:
| Q |
1 |
caactgttggagctgcattctcgactgtgtgctgatccggatttctgtagagttcctttgtgcaggtaacaatattacgtgttttctaactatggttgta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5487686 |
caactgttggagctgcattctcgactgtgtgctgatccggatttctgtagagttcctttgtgcaggtaacaatattacgtgttttctaactatggttgta |
5487785 |
T |
|
| Q |
101 |
cttaattcagctcaatcattcaggtgaattgtaacaaatcttttcatttcaggaactttaagcagagaatatcaaaacaaagcaagaaagacgaaattag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5487786 |
cttaattcagctcaatcattcaggtgaattgtaacaaatcttttcatttcaggaactttaagcagagaatatcaaaacaaagcaagaaagacgaaattag |
5487885 |
T |
|
| Q |
201 |
atggacaattttggttgaaaag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
5487886 |
atggacaattttggttgaaaag |
5487907 |
T |
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