View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0680_low_19 (Length: 267)
Name: NF0680_low_19
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0680_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5190841 - 5191078
Alignment:
| Q |
1 |
agcagttcaaagaattgtccagcaagaaaacaagttgaaagaaaccacatggaccccaccgtactcctcgtaacatacacctccgatcacaaccacgccg |
100 |
Q |
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| T |
5190841 |
agcagttcaaagaattgtccagcaagaaaacaagttgaaagaaaccacatggaccccaccgtactccttgtaacatacacctccgatcacaaccacgccg |
5190940 |
T |
|
| Q |
101 |
tgccaccaccgagaaactaccgcaacacaagcaacaacaccgcatcaaacaaagactccgaatcagaacaagaaccagatgaaacgttcacgaatattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5190941 |
tgccaccaccgagaaactaccgcaacacaagcaacaacaccgcatcaaacaaagactccgaatcagaacaagaaccagatgaaacgttcacgaatattga |
5191040 |
T |
|
| Q |
201 |
agaaaattcaatgatttccaccggtgatgagttaggag |
238 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
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| T |
5191041 |
agaaaattcaatgattgccaccggtgatgagttaggag |
5191078 |
T |
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