View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0680_low_2 (Length: 613)
Name: NF0680_low_2
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0680_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 418008 - 418396
Alignment:
| Q |
10 |
aataatatcaactcacaatgataaaagtgttataaaagaaacacttaaaaaggcaattggtgttgtgtgtgtaaacgcgttacatcaacannnnnnnnnn |
109 |
Q |
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| T |
418008 |
aataaaatcaactcacaatgataaaagtgttataaa-gaaacacttaaaaaggcaattggtgttgtgtgtgtaaacgcgttacatcaacatctctctct- |
418105 |
T |
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| Q |
110 |
nnnnccactcccactcaaggtcatgactcgatgaccatccaggttcccaccaaacactcttgttgagtatgagaaattagagaaagagaccccatgcaat |
209 |
Q |
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| T |
418106 |
-----ctctcccactcaaggtcatgactcgatgaccatccaggttcccaccaaacactcttgttgagtatgagaaattagagaaagagaccccatgcaat |
418200 |
T |
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| Q |
210 |
caaatgccataaaacaaaacacaataaaaacatgatgctcccactattttaaattaagtgtaattgtataacatatatatagatttatttttggattgag |
309 |
Q |
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| T |
418201 |
caaatgccat-----aaaacacaataaaaacatgatgctcccactattttaaattaagtataattgtataacatatatatagatttatttttggattgag |
418295 |
T |
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| Q |
310 |
atag---------------------agtatgatatgattaaactttatttttgggttatttgttaagactagaagtggtatgtacttagcaaagcaatag |
388 |
Q |
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| T |
418296 |
atagatagatagatagtcatagtatagtatgatatgatttaactttatttttgggttatttgttaagactagaagtggtatgtacttagcaatgcaatag |
418395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 421 - 518
Target Start/End: Original strand, 418423 - 418516
Alignment:
| Q |
421 |
tgtgttgtgtactatactatactatactatgtgatagagagcatctgcaggttgatatgtaagtaatattattactgagtttagtagtacagctatat |
518 |
Q |
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| T |
418423 |
tgtgttgtgtactatactatactatactatgtgatagagagcatctgcaggttgatat----gtaatattattactgagtttagtagtacagctatat |
418516 |
T |
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