View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0680_low_21 (Length: 252)

Name: NF0680_low_21
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0680_low_21
NF0680_low_21
[»] chr8 (4 HSPs)
chr8 (12-219)||(14984192-14984399)
chr8 (26-125)||(37031472-37031571)
chr8 (27-122)||(18836341-18836436)
chr8 (27-125)||(8781086-8781184)
[»] chr7 (3 HSPs)
chr7 (27-125)||(25844721-25844819)
chr7 (27-125)||(24442582-24442680)
chr7 (27-104)||(19389549-19389627)
[»] chr4 (6 HSPs)
chr4 (27-123)||(5523973-5524069)
chr4 (1-102)||(10725142-10725237)
chr4 (1-102)||(10938911-10939006)
chr4 (27-125)||(19363404-19363502)
chr4 (79-123)||(19374392-19374436)
chr4 (27-104)||(21161334-21161410)
[»] chr6 (2 HSPs)
chr6 (50-123)||(10358264-10358337)
chr6 (31-125)||(22559405-22559499)
[»] chr3 (2 HSPs)
chr3 (27-123)||(4471816-4471913)
chr3 (86-122)||(26817358-26817394)
[»] chr2 (4 HSPs)
chr2 (30-108)||(37444159-37444236)
chr2 (79-125)||(15341248-15341294)
chr2 (87-125)||(19617493-19617531)
chr2 (79-123)||(24761932-24761977)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 14984192 - 14984399
Alignment:
Q  12 agagaccctgctacattgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatccta 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  14984192 agagacactgctacattgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagtttcatcattgatcatgtcaaattcgtaatgatccta 14984291  T
Q  112 ggaaaggaaatcaannnnnnnnnaatttccgctgcctttaattatcatgattttccttcagtttgtgccacatcatatttggctcactagatgtgaagga 211  Q
    |||||||||||||          |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  14984292 ggaaaggaaatcattttttttttaatttccgctgcctttaattatcatgatttcccttcagtttgtgccacatcatttttggctcactagatgtgaagga 14984391  T
Q  212 agacttag 219  Q
    ||||||||    
T  14984392 agacttag 14984399  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 37031571 - 37031472
Alignment:
Q  26 attgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatcaa 125  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||    
T  37031571 attgctttgatgtgatcgaaattcttttctgcacttcaagaggtaacaattctatcactgatcatgttaaattcgtaatgatccaaggaaaggaaatcaa 37031472  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 18836341 - 18836436
Alignment:
Q  27 ttgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaat 122  Q
    |||||||||||||||||| || | | || ||||||| |||||||||| ||  ||||||||||||||||||||| ||||||||| ||||||| ||||    
T  18836341 ttgctttgttgtgatcgagattcctgtctgcacttcgagaggtaacatttgaatcactgatcatgtcaaattcataatgatccaaggaaagaaaat 18836436  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 8781184 - 8781086
Alignment:
Q  27 ttgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatcaa 125  Q
    |||||||| || |||| ||||||||||| |||||| |||| |||| | ||| |||||||||||||||||||||||||||||   ||| |||||||||||    
T  8781184 ttgctttgatgagatcaaaatccttttctgcacttaaagaagtaaaatttctatcactgatcatgtcaaattcgtaatgattgaagggaaggaaatcaa 8781086  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 25844819 - 25844721
Alignment:
Q  27 ttgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatcaa 125  Q
    ||||||||||||||||||||||||||||   ||||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  25844819 ttgctttgttgtgatcgaaatccttttctatacttcgagaggtaacaattctatcactgatcatgtcaaattcgtaatgatccaaggaaaggagatcaa 25844721  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 24442680 - 24442582
Alignment:
Q  27 ttgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatcaa 125  Q
    |||||||||||||||||| || ||| || ||| ||| |||||| ||| |   |||| |||||||||||||||||||||||||| ||| ||| |||||||    
T  24442680 ttgctttgttgtgatcgagattcttgtctgcaattcgagaggtgacattctaatcattgatcatgtcaaattcgtaatgatccaaggcaagaaaatcaa 24442582  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 19389549 - 19389627
Alignment:
Q  27 ttgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactga-tcatgtcaaattcgtaat 104  Q
    |||||||  ||||||||| | | ||||| |||||||||||||||||| || ||||| ||| ||||||||||||||||||    
T  19389549 ttgctttactgtgatcgagaactttttctgcacttcaagaggtaacaatttcatcattgattcatgtcaaattcgtaat 19389627  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 5524069 - 5523973
Alignment:
Q  27 ttgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatc 123  Q
    |||||||| ||||||| |||| |||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||||||||    
T  5524069 ttgctttgctgtgatcaaaattcttttctgtacttcaagaggtaacaattctatcactgatcatgtcaaattcgtaatgatccaagaaaaggaaatc 5523973  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10725237 - 10725142
Alignment:
Q  1 tgtggaggagcagagaccctgctacattgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcg 100  Q
    |||||| ||| |||| | ||||||||||| ||| |||||||||||||||||||| |||||      ||||||| ||||||||||||||||||||||||||    
T  10725237 tgtggacgagtagaggcactgctacattgatttattgtgatcgaaatccttttctgcact------ggtaacaattccatcactgatcatgtcaaattcg 10725144  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10939006 - 10938911
Alignment:
Q  1 tgtggaggagcagagaccctgctacattgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcg 100  Q
    |||||| ||| |||| | ||||||||||| ||| |||||||||||||||||||| |||||      ||||||| ||||||||||||||||||||||||||    
T  10939006 tgtggacgagtagaggcactgctacattgatttattgtgatcgaaatccttttctgcact------ggtaacaattccatcactgatcatgtcaaattcg 10938913  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 19363404 - 19363502
Alignment:
Q  27 ttgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatcaa 125  Q
    |||||||||| ||||||| || | | || || |||| |||||||||| |   ||||||||| ||||||||||||||||||||| | ||||| |||||||    
T  19363404 ttgctttgttttgatcgagattcctgtctgcgcttcgagaggtaacattcgaatcactgataatgtcaaattcgtaatgatccaaagaaagcaaatcaa 19363502  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 19374392 - 19374436
Alignment:
Q  79 atcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatc 123  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||    
T  19374392 atcactcatcatgtcaaatttgtaatgatccaaggaaaggaaatc 19374436  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 21161410 - 21161334
Alignment:
Q  27 ttgctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaat 104  Q
    |||||||| ||||||| | |  ||||||  |||||| |||||||||| |||  |||||||||||||||||||||||||    
T  21161410 ttgctttgctgtgatcaagactcttttctacacttcgagaggtaaca-ttctttcactgatcatgtcaaattcgtaat 21161334  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 10358337 - 10358264
Alignment:
Q  50 ttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatc 123  Q
    ||||| |||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||| ||||||| |||||    
T  10358337 ttttctgcacttcaagaggtaacatttctatcactgttcatgtcgaattcgtaatgatccaaggaaagaaaatc 10358264  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 22559499 - 22559405
Alignment:
Q  31 tttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatcaa 125  Q
    |||||||||||||| || | | || |||||||||| ||||| | |   ||||||||||||||||| ||| ||||||||| ||||||| |||||||    
T  22559499 tttgttgtgatcgatattcctgtctgcacttcaagtggtaaaattcgaatcactgatcatgtcaagttcttaatgatccaaggaaagaaaatcaa 22559405  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 4471816 - 4471913
Alignment:
Q  27 ttgctttgttgtgatcgaaatcct--tttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatc 123  Q
    |||||||||||||||||| || ||  |||| |||||| | |||||||||  |  ||||||||||||||||||||||||||||||| |||||||||||||    
T  4471816 ttgctttgttgtgatcgagattctcttttctgcacttga-gaggtaacatattaatcactgatcatgtcaaattcgtaatgatccaaggaaaggaaatc 4471913  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 26817358 - 26817394
Alignment:
Q  86 atcatgtcaaattcgtaatgatcctaggaaaggaaat 122  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26817358 atcatgtcaaattcgtaatgatccaaggaaaggaaat 26817394  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 37444159 - 37444236
Alignment:
Q  30 ctttgttgtgatcgaaatccttttcagcacttcaagaggtaacagttccatcactgatcatgtcaaattcgtaatgatc 108  Q
    ||||||||||||||| |  |||||| ||||||||||||||||||  || |||| |||||||||||||||||||||||||    
T  37444159 ctttgttgtgatcgagaatcttttctgcacttcaagaggtaaca-atctatcattgatcatgtcaaattcgtaatgatc 37444236  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 15341294 - 15341248
Alignment:
Q  79 atcactgatcatgtcaaattcgtaatgatcctaggaaaggaaatcaa 125  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  15341294 atcactgatcatgtcaaattcgtaatgatccaaggaagggaaatcaa 15341248  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 19617493 - 19617531
Alignment:
Q  87 tcatgtcaaattcgtaatgatcctaggaaaggaaatcaa 125  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  19617493 tcatgtcaaattcgtaatgatccaaggaaagaaaatcaa 19617531  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 24761977 - 24761932
Alignment:
Q  79 atcactga-tcatgtcaaattcgtaatgatcctaggaaaggaaatc 123  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||    
T  24761977 atcactgagtcatgtcaaattcgtaatgatccaaggaaagaaaatc 24761932  T

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