View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0680_low_22 (Length: 251)
Name: NF0680_low_22
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0680_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 14984432 - 14984670
Alignment:
| Q |
1 |
cctagatactaatgagctagatcaaaatataatttatgagaaaacattatggcgtaatttgattcttgtaactaactcacttactcgataagatttggtt |
100 |
Q |
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| T |
14984432 |
cctagatactaatgagctagatcaaaatataatttatgagaaaatattatggcgtaatttgattcttgtaactaactcacttactcgataaggtttggtt |
14984531 |
T |
|
| Q |
101 |
aaggatta------gttgttgtatttcttcttcatttattacacttaaaattatatattttttaaacaaaactgtg--ttttaaataacttagaaacaca |
192 |
Q |
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| T |
14984532 |
aaggattagttgttgttgttgtatttcttcttcatttattacacttaaaattatatattttttagacaaaactgtgtattttaaataacttagaaacaca |
14984631 |
T |
|
| Q |
193 |
ttaaaattctttaaaaagtaagatattacatgatgatgt |
231 |
Q |
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| T |
14984632 |
ttaaaattctttaaaaagtacgatattacatgatgatgt |
14984670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 45788571 - 45788617
Alignment:
| Q |
10 |
taatgagctagatcaaaatataatttatgagaaaacattatggcgta |
56 |
Q |
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| T |
45788571 |
taatgagttaaatcaaaatataacttatgataaaacattatggcgta |
45788617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 20601737 - 20601689
Alignment:
| Q |
25 |
aaatataatttatgagaaaacattatggcgtaatttgattcttgtaact |
73 |
Q |
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| T |
20601737 |
aaatatgatttatgatagaacattatgacgtaatttgattcatgtaact |
20601689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 3457543 - 3457596
Alignment:
| Q |
10 |
taatgagctagatcaaaatataatttatgagaaaacattatggcgtaatttgat |
63 |
Q |
| |
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||||||| | ||||||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
3457543 |
taatgagttggatcaaaatattgtttatgataaaacattatggcataatttgat |
3457596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 28355347 - 28355400
Alignment:
| Q |
10 |
taatgagctagatcaaaatataatttatgagaaaacattatggcgtaatttgat |
63 |
Q |
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||||||| | ||||||||||| ||||||| |||||||||||||| |||||||| |
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|
| T |
28355347 |
taatgaggtggatcaaaatatggtttatgataaaacattatggcggaatttgat |
28355400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 5096016 - 5096069
Alignment:
| Q |
10 |
taatgagctagatcaaaatataatttatgagaaaacattatggcgtaatttgat |
63 |
Q |
| |
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| T |
5096016 |
taatgagttggatcaaaatatggtttatgatagaacattatggcgtaatttgat |
5096069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 2090595 - 2090648
Alignment:
| Q |
10 |
taatgagctagatcaaaatataatttatgagaaaacattatggcgtaatttgat |
63 |
Q |
| |
|
||||||||| |||| ||||||| ||||||| ||||||||||||||||||||| |
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| T |
2090595 |
taatgagcttgatccaaatatagtttatgatccaacattatggcgtaatttgat |
2090648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 27520307 - 27520247
Alignment:
| Q |
10 |
taatgagctagatcaaaatataatttatgagaaaacattatggcgtaatttgattcttgta |
70 |
Q |
| |
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||||||||| |||| |||||| |||||||| | ||||||||| |||||||||||| |||| |
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|
| T |
27520307 |
taatgagctggatccaaatatgatttatgatagaacattatgatgtaatttgattcatgta |
27520247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 52532716 - 52532656
Alignment:
| Q |
10 |
taatgagctagatcaaaatataatttatgagaaaacattatggcgtaatttgattcttgta |
70 |
Q |
| |
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||||||| | || |||||||| ||||||| | ||||||||||||||||||||||| |||| |
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| T |
52532716 |
taatgagttggaacaaaatatggtttatgatagaacattatggcgtaatttgattcatgta |
52532656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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