View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0680_low_27 (Length: 210)

Name: NF0680_low_27
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0680_low_27
NF0680_low_27
[»] chr6 (5 HSPs)
chr6 (2-101)||(11121407-11121506)
chr6 (2-68)||(1122236-1122302)
chr6 (12-54)||(19430326-19430368)
chr6 (12-54)||(22514533-22514575)
chr6 (12-54)||(18898944-18898986)
[»] chr4 (8 HSPs)
chr4 (3-79)||(29688924-29689000)
chr4 (12-79)||(36316258-36316324)
chr4 (12-79)||(36330467-36330533)
chr4 (2-54)||(39295911-39295963)
chr4 (12-54)||(5948179-5948221)
chr4 (12-46)||(27020308-27020342)
chr4 (12-54)||(34806279-34806321)
chr4 (3-100)||(33287482-33287579)
[»] chr7 (7 HSPs)
chr7 (7-90)||(21292314-21292397)
chr7 (2-79)||(21949784-21949860)
chr7 (2-54)||(6617022-6617074)
chr7 (2-54)||(9174921-9174973)
chr7 (12-54)||(34638539-34638581)
chr7 (12-54)||(42053618-42053660)
chr7 (12-54)||(46809031-46809073)
[»] chr1 (14 HSPs)
chr1 (7-100)||(36085755-36085848)
chr1 (7-68)||(32829245-32829305)
chr1 (12-54)||(2843948-2843990)
chr1 (12-54)||(8110684-8110726)
chr1 (7-68)||(5965130-5965190)
chr1 (1-54)||(38981091-38981144)
chr1 (2-54)||(2027818-2027870)
chr1 (2-54)||(45541457-45541509)
chr1 (7-65)||(15853336-15853393)
chr1 (12-54)||(18414527-18414569)
chr1 (12-54)||(24779852-24779894)
chr1 (12-54)||(28641619-28641661)
chr1 (12-54)||(32519798-32519840)
chr1 (2-54)||(49008163-49008215)
[»] chr8 (8 HSPs)
chr8 (3-62)||(18464749-18464808)
chr8 (2-86)||(31441761-31441845)
chr8 (1-47)||(22935502-22935548)
chr8 (2-53)||(15988073-15988124)
chr8 (12-54)||(12498760-12498802)
chr8 (12-54)||(18381404-18381446)
chr8 (12-54)||(39617946-39617988)
chr8 (15-68)||(3730460-3730513)
[»] chr5 (8 HSPs)
chr5 (1-54)||(641016-641069)
chr5 (2-79)||(39004850-39004926)
chr5 (1-54)||(40835033-40835086)
chr5 (2-54)||(16484938-16484990)
chr5 (2-48)||(1594590-1594636)
chr5 (12-54)||(5808386-5808428)
chr5 (12-54)||(16482489-16482531)
chr5 (12-54)||(39560955-39560997)
[»] chr2 (5 HSPs)
chr2 (1-54)||(30960858-30960911)
chr2 (2-66)||(19622557-19622621)
chr2 (1-48)||(4647980-4648027)
chr2 (7-90)||(9893886-9893967)
chr2 (1-54)||(7647598-7647651)
[»] chr3 (9 HSPs)
chr3 (2-54)||(3335999-3336051)
chr3 (2-54)||(33951719-33951771)
chr3 (2-54)||(47330081-47330133)
chr3 (2-54)||(4062425-4062477)
chr3 (2-54)||(22402398-22402450)
chr3 (1-53)||(25899174-25899226)
chr3 (2-54)||(37969168-37969220)
chr3 (2-68)||(46028319-46028384)
chr3 (2-54)||(28414103-28414155)
[»] scaffold0009 (1 HSPs)
scaffold0009 (12-54)||(194701-194743)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 11121407 - 11121506
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgttcactgacatga 101  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  11121407 tgtggattcgttaattaccgtgttggcggtcgaatccactccccactttcaagcatctgtctgtggttatgtatcccagtcatcctgttcactaacatga 11121506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 1122236 - 1122302
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 68  Q
    |||||||||  ||||||||||||||||||| |||||||||||||||| ||||| |||| | ||||||    
T  1122236 tgtggattcgctaattaccgtgttggcggtcgaatccactccccactctcaagaatctatttgtggt 1122302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 19430368 - 19430326
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  19430368 ttaattaccgtgttggcggttgaatctactccccactctcaag 19430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 22514575 - 22514533
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  22514575 ttaattaccgtgttggcggttgaatctactccccactctcaag 22514533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 18898944 - 18898986
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||| |||||| |||||    
T  18898944 ttaattaccgtgttggcggttgaatctacttcccactctcaag 18898986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 29689000 - 29688924
Alignment:
Q  3 gtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatccca 79  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  29689000 gtggattcgctaattaccgtgttggcggtcgaacccactccccactttcaagcatttgtccgtggttatgtatccca 29688924  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 36316258 - 36316324
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatccca 79  Q
    |||||||||||||||||||||||||| |||||||||| ||||| || ||| ||| ||| |||||||||    
T  36316258 ttaattaccgtgttggcggttgaatctactccccactctcaagaatatgtatgt-gttttgtatccca 36316324  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 36330467 - 36330533
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatccca 79  Q
    |||||||||||||||||||||||||| |||||||||| ||||| || ||| ||| ||| |||||||||    
T  36330467 ttaattaccgtgttggcggttgaatctactccccactctcaagaatatgtatgt-gttttgtatccca 36330533  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 39295963 - 39295911
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  ||||||||||||||||| |||||||| |||||||||| |||||    
T  39295963 tgtggatttgttaattaccgtgttggctgttgaatctactccccactctcaag 39295911  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 5948221 - 5948179
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||| |||||| |||||    
T  5948221 ttaattaccgtgttggcggttgaatctacttcccactctcaag 5948179  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 27020308 - 27020342
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactcccca 46  Q
    |||||||||||||||||||||||||| ||||||||    
T  27020308 ttaattaccgtgttggcggttgaatctactcccca 27020342  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 34806321 - 34806279
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||||||||||||||||||||  ||||||||| |||||    
T  34806321 ttaattaccgtgttggcggttgaatctgctccccactctcaag 34806279  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 33287482 - 33287579
Alignment:
Q  3 gtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgttcactgacatg 100  Q
    |||||||  ||| ||||||||||||||||  |||||| |||||| |||||||||| |||  || |||||  ||| || |||||||||| | |||||||    
T  33287482 gtggatttgttatttaccgtgttggcggtcaaatccagtccccaatttcaagcatttgtgcgtcgttattaatctcagtcatcctgttgattgacatg 33287579  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 21292314 - 21292397
Alignment:
Q  7 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgtt 90  Q
    |||| ||||||||||||||||||||  | |||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||    
T  21292314 attcgttaattaccgtgttggcggtcaagtccactccccacttgcaagcatctgtttgtggttatgtatccaagtcatcctgtt 21292397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 21949784 - 21949860
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatccca 79  Q
    ||||||||  |||||||||||||||| ||||||||| |||||||||| ||||| || ||| ||| ||| |||||||||    
T  21949784 tgtggattttttaattaccgtgttggtggttgaatctactccccactctcaagaatatgtatgt-gttttgtatccca 21949860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 6617074 - 6617022
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  6617074 tgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 6617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 9174921 - 9174973
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  ||||||||| |||||||||||||||| |||||||||| |||||    
T  9174921 tgtggatttgttaattaccatgttggcggttgaatcaactccccactctcaag 9174973  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 34638539 - 34638581
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||| |||||| |||||    
T  34638539 ttaattaccgtgttggcggttgaatctacttcccactctcaag 34638581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 42053660 - 42053618
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||| |||||| |||||    
T  42053660 ttaattaccgtgttggcggttgaatctacttcccactctcaag 42053618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 46809073 - 46809031
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  46809073 ttaattaccgtgttggtggttgaatctactccccactctcaag 46809031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 36085848 - 36085755
Alignment:
Q  7 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgttcactgacatg 100  Q
    |||| ||| ||||||| ||| |||| |||| |||||| ||||||||||||||||||||||||||| ||||||| ||||| |||| | |||||||    
T  36085848 attcgttatttaccgtattgacggtcgaattcactccacactttcaagcatctgtctgtggttatctatcccagtcatcttgttgattgacatg 36085755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 32829245 - 32829305
Alignment:
Q  7 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 68  Q
    |||| |||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||    
T  32829245 attcgttaattaccgtgttggcggtcgaatccac-ccccattttcaagcatttgtctgtggt 32829305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 2843990 - 2843948
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  2843990 ttaattaccgtgttggcggttgaatctactccccactctcaag 2843948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 8110726 - 8110684
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  8110726 ttaattaccgtgttggcggttgaatctactccccactctcaag 8110684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 5965130 - 5965190
Alignment:
Q  7 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 68  Q
    |||| |||||||||||||||||||| |||| ||| ||||| |||||||||| ||||||||||    
T  5965130 attcgttaattaccgtgttggcggtcgaattcac-ccccattttcaagcatttgtctgtggt 5965190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38981091 - 38981144
Alignment:
Q  1 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||  ||||||| |||||||||||||||||| |||||||||| |||||    
T  38981091 atgtggatttgttaattaacgtgttggcggttgaatctactccccactctcaag 38981144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 2027870 - 2027818
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  2027870 tgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 2027818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 45541509 - 45541457
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  45541509 tgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 45541457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 15853393 - 15853336
Alignment:
Q  7 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgt 65  Q
    |||| |||||||||||||||||||| |||||||| ||| | |||||||||| |||||||    
T  15853393 attcgttaattaccgtgttggcggtcgaatccac-ccctattttcaagcatttgtctgt 15853336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 18414569 - 18414527
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||| |||||| |||||    
T  18414569 ttaattaccgtgttggcggttgaatctacttcccactctcaag 18414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 24779894 - 24779852
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||| ||||||||||| |||||||||| |||||    
T  24779894 ttaattaccgtgttagcggttgaatctactccccactctcaag 24779852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 28641619 - 28641661
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  28641619 ttaattaccgtgttggtggttgaatctactccccactctcaag 28641661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 32519798 - 32519840
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||| |||||| |||||    
T  32519798 ttaattaccgtgttggcggttgaatctacttcccactctcaag 32519840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 49008215 - 49008163
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  ||||||||||| |||||||||||||| ||||| |||| |||||    
T  49008215 tgtggatttgttaattaccgtattggcggttgaatctactccacactctcaag 49008163  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 18464749 - 18464808
Alignment:
Q  3 gtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtc 62  Q
    |||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  18464749 gtggattcgttatttaccgtgtcggcggtcgaatccactccccactttcaagcatctgtc 18464808  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 31441845 - 31441761
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcc 86  Q
    ||||||||  ||||| || ||||||||||||||||||||||||||||  |||| ||||||||||||||  |||||| | ||||||    
T  31441845 tgtggatttgttaatgactgtgttggcggttgaatccactccccactagcaagaatctgtctgtggtttcgtatcctagtcatcc 31441761  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22935502 - 22935548
Alignment:
Q  1 atgtggattcattaattaccgtgttggcggttgaatccactccccac 47  Q
    |||||||||| |||| ||||||||||||||| |||||||||||||||    
T  22935502 atgtggattcgttaactaccgtgttggcggtcgaatccactccccac 22935548  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 15988124 - 15988073
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 53  Q
    |||||||||  ||||||||||||||||||| |||| ||||||||||| ||||    
T  15988124 tgtggattctctaattaccgtgttggcggtcgaattcactccccactctcaa 15988073  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 12498760 - 12498802
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||||| |||| |||||    
T  12498760 ttaattaccgtgttggcggttgaatctactcctcactctcaag 12498802  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 18381404 - 18381446
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||| |||||| |||||    
T  18381404 ttaattaccgtgttggcggttgaatctacttcccactctcaag 18381446  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 39617946 - 39617988
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  39617946 ttaattaccgtgttggtggttgaatctactccccactctcaag 39617988  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 3730460 - 3730513
Alignment:
Q  15 attaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 68  Q
    |||||| |||||||| |  ||||||||||||||||||||| || ||||||||||    
T  3730460 attaccatgttggcgttcaaatccactccccactttcaagaatttgtctgtggt 3730513  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 641016 - 641069
Alignment:
Q  1 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||| |||| ||||||||||||||| |||||||||||||||| |||||    
T  641016 atgtggattcgttaactaccgtgttggcggtcgaatccactccccactctcaag 641069  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 39004926 - 39004850
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatccca 79  Q
    ||||||||  ||||||||||||||| |||||||||| |||||||||| ||||| || ||| ||| ||| |||||||||    
T  39004926 tgtggatttgttaattaccgtgttgacggttgaatctactccccactctcaagaatatgtatgt-gttttgtatccca 39004850  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40835086 - 40835033
Alignment:
Q  1 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  40835086 atgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 40835033  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 16484990 - 16484938
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  16484990 tgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 16484938  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 1594590 - 1594636
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccact 48  Q
    ||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  1594590 tgtggatttgttaattaccgtgttggcggttgaatctactccacact 1594636  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 5808386 - 5808428
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  5808386 ttaattaccgtgttggtggttgaatctactccccactctcaag 5808428  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 16482531 - 16482489
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||| |||||| |||||    
T  16482531 ttaattaccgtgttggcggttgaatctacttcccactctcaag 16482489  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 39560955 - 39560997
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||||| |||| |||||    
T  39560955 ttaattaccgtgttggcggttgaatctactccacactctcaag 39560997  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30960911 - 30960858
Alignment:
Q  1 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  30960911 atgtggattcgttaattaccgtgttggcggtcgaatccgctccccactctcaag 30960858  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 19622621 - 19622557
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtg 66  Q
    ||||||||| |||||||||||||||| |||  ||||||||||||||| ||||| |||||| ||||    
T  19622621 tgtggattcgttaattaccgtgttggtggtcaaatccactccccactctcaagaatctgtttgtg 19622557  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4647980 - 4648027
Alignment:
Q  1 atgtggattcattaattaccgtgttggcggttgaatccactccccact 48  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||||    
T  4647980 atgtggatttgttaattaccgtgttggcggttgaatctactccccact 4648027  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 9893886 - 9893967
Alignment:
Q  7 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgtt 90  Q
    |||| ||||||| ||||| |||| | |||||||| |||||||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  9893886 attcgttaattatcgtgt-ggcgatcgaatccac-ccccactttcaaacatttgtctgtggttatctatcccagtcatcctgtt 9893967  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7647598 - 7647651
Alignment:
Q  1 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||| |||| ||||||||||||||| |||| ||||||||||| |||||    
T  7647598 atgtggattcgttaactaccgtgttggcggtcgaatgcactccccactctcaag 7647651  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 3335999 - 3336051
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  3335999 tgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 3336051  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 33951719 - 33951771
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  33951719 tgtggattttttaattaccgtgttggcggttgaatctactccccactctcaag 33951771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 47330081 - 47330133
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  47330081 tgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 47330133  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 4062425 - 4062477
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  4062425 tgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 4062477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 22402450 - 22402398
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  22402450 tgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 22402398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25899174 - 25899226
Alignment:
Q  1 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 53  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||| ||||    
T  25899174 atgtggtttcattaattaccgtgttggcggtcgaatctactctccactctcaa 25899226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 37969220 - 37969168
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  37969220 tgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 37969168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 46028319 - 46028384
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 68  Q
    |||| |||| |||||||| ||||||||||| |||||||| ||| | |||||||||| ||||||||||    
T  46028319 tgtgaattcgttaattacagtgttggcggtcgaatccac-ccctattttcaagcatttgtctgtggt 46028384  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 28414103 - 28414155
Alignment:
Q  2 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    ||||||||  |||||||| ||||||||||||||||| ||||| |||| |||||    
T  28414103 tgtggatttgttaattactgtgttggcggttgaatctactccacactctcaag 28414155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 194701 - 194743
Alignment:
Q  12 ttaattaccgtgttggcggttgaatccactccccactttcaag 54  Q
    |||||||||||||||||||||||||| ||| |||||| |||||    
T  194701 ttaattaccgtgttggcggttgaatctacttcccactctcaag 194743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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