View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0680_low_3 (Length: 543)
Name: NF0680_low_3
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0680_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 530
Target Start/End: Complemental strand, 12452670 - 12452180
Alignment:
| Q |
30 |
atcttgttgtgcgtttaccttctattcatgaatatatgatactaatgaatatcctaaaagctttgattaagaaaccaaaagaattaactttgtataaaaa |
129 |
Q |
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||||| ||| ||| |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12452670 |
atcttattgcgcgcttaccttctattcatgaatatatgatactaatgaatgttctaaaagccttgattaagaaaccaaaagaattaactttgtataaaaa |
12452571 |
T |
|
| Q |
130 |
tatgttataattatttacattgataattagaattaaccaatcggttggcttttcttgtttttccttcaattgctagttctcaaatattaacaaattgctt |
229 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12452570 |
tatgttctaattatttacattgataattagaattaaccaatcggtttgcttttcttatttttccttcaattactagttctcaaatattaacaaattgctt |
12452471 |
T |
|
| Q |
230 |
tccaattgattcctccactcacgtatcccatcatctcatgatttaaggaatttgctctcttaatttcaaaaatcaatttcatcacgtttgtttttcatta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12452470 |
tccaattgattcctccactcacgtatcccatcatctcatgatttaa-gaatttgctctcttaatttcaaaaaccaatttcatcacgtttgtttttcatta |
12452372 |
T |
|
| Q |
330 |
acgccaaatttatttggtggttttccaacaccat----------caattggtgtctcacgtaagtggctatttcaatcaactagggttatatgttcatca |
419 |
Q |
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||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||| |
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| T |
12452371 |
tcgccaaatttatttggtggttttccaaaacggtggtgttgttccaattggtgtctcacgtaagtggctatttcaatcaactaaggttacacgtttatca |
12452272 |
T |
|
| Q |
420 |
caaattcttttacgttctgctttcttctagttgctttattgtttgtgatctcagttttgccgatagccatgttcgattggcaagcagaattggggacgcc |
519 |
Q |
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| T |
12452271 |
caaattatgttacgttctgctttctt----ttg---------------tctcagttctgccgatcgccatgttcgattggcaagcagaattggggacgcc |
12452191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 48842950 - 48843037
Alignment:
| Q |
68 |
atactaatgaatatcctaaaagctttgattaagaaaccaaaagaattaactttgtataaaaatatgttataattatttacattgataa |
155 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| || ||| ||| |||||| | |||||||||||||||||||||||| |
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| T |
48842950 |
atactaatgaatatcctaaaagcattgattaagaaaccaaaaaaagtaattttatataaacaagtgttataattatttacattgataa |
48843037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 52672409 - 52672346
Alignment:
| Q |
81 |
tcctaaaagctttgattaagaaaccaaaagaattaactttgtataaaaatatgttataattatt |
144 |
Q |
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|||| ||||| ||| |||| ||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
52672409 |
tcctgaaagcattggttaaaaaacctaaagaattaactttgtataaaaaaatgttgtaattatt |
52672346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 213 - 530
Target Start/End: Original strand, 22715309 - 22715617
Alignment:
| Q |
213 |
atattaacaaattgctttccaattgattcctccactcacgtatcccatcatctcatgatttaaggaatttgctctcttaatttcaaaaatcaatttcatc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22715309 |
atattaacaaattgctttccaattgattcctccactcacgtataccatcatctcatgatttaaggaatttgctctcttaatttcaaaatccaatttcatc |
22715408 |
T |
|
| Q |
313 |
acgtttgtttttcattaacgccaaatttatttggtggttttccaacaccatcaattggtgtctcacgt-aagtggcta-tttcaatcaactagggttata |
410 |
Q |
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||||||||||||||||| |||||| || ||||||||||||||||| || | || ||| || | ||||||| ||||||| ||||||||||| | |
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| T |
22715409 |
acgtttgtttttcattatcgccaatttcatttggtggttttccaa-acggt--ggtgttgttccaattggcgtggctattttcaataaactagggttaca |
22715505 |
T |
|
| Q |
411 |
tgttcatcacaaattcttttacgttctgctttcttctagttgctttattgtttgtgatctcagttttgccgatagccatgttcgattggcaagcagaatt |
510 |
Q |
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||| |||||||||||| ||||| | ||| |||| ||||| |||||| |||||||| ||| ||||| |||||||||||||||||||||||| |
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| T |
22715506 |
cgtt-atcacaaattctgttacg-------tatttccagttactttaccgtttgtagtctcagttctgctgatagtcatgttcgattggcaagcagaatt |
22715597 |
T |
|
| Q |
511 |
ggggacgcctgctccggttc |
530 |
Q |
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|||||||||||||||||||| |
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| T |
22715598 |
ggggacgcctgctccggttc |
22715617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 21363279 - 21363347
Alignment:
| Q |
187 |
tttttccttcaattgctagttctcaaatattaacaaattgctttccaattgattcctccactcacgtat |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21363279 |
tttttccttcaattgctagttctcaaatattaacaaattgctttccaattgattcctccactcacgtat |
21363347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 21363351 - 21363401
Alignment:
| Q |
375 |
tcacgtaagtggctatttcaatcaactagggttatatgttcatcacaaatt |
425 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
21363351 |
tcacgtaagtggctatttcaatcaactagggttacacgttcatcacaaatt |
21363401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 12480400 - 12480468
Alignment:
| Q |
187 |
tttttccttcaattgctagttctcaaatattaacaaattgctttccaattgattcctccactcacgtat |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12480400 |
tttttccttcaattgctagttctcaaatattaacaaattgctttcaaattgattcctccactcacgtat |
12480468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 532
Target Start/End: Original strand, 12480472 - 12480617
Alignment:
| Q |
375 |
tcacgtaagtggctatttcaatcaactagggttatatgttcatcacaaattcttttacgttctgctttcttctagttgctttattgtttgtgatctcagt |
474 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| | |||||||| ||||||| ||||| || |||||||| ||||||| ||||||| |
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| T |
12480472 |
tcacgtaagtggccatttcaatcaattagggttacacgttcatcagaaattctgttacggact------------ttgctttactgtttgtagtctcagt |
12480559 |
T |
|
| Q |
475 |
tttgccgatagccatgttcgattggcaagcagaattggggacgcctgctccggttcat |
532 |
Q |
| |
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| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
12480560 |
tctgccaattgccatgttcgattggcaagcagaattggggacgcctgttccggttcat |
12480617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 1738663 - 1738615
Alignment:
| Q |
81 |
tcctaaaagctttgattaagaaaccaaaagaattaactttgtataaaaa |
129 |
Q |
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|||||| ||| || ||||||| ||||||||||||||||||||||||||| |
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|
| T |
1738663 |
tcctaatagcattaattaagagaccaaaagaattaactttgtataaaaa |
1738615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 132
Target Start/End: Original strand, 29432890 - 29432920
Alignment:
| Q |
102 |
aaccaaaagaattaactttgtataaaaatat |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
29432890 |
aaccaaaagaattaactttgtataaaaatat |
29432920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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