View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0680_low_4 (Length: 470)
Name: NF0680_low_4
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0680_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Original strand, 28823568 - 28824003
Alignment:
| Q |
11 |
agaatatatattataaggcaaacctaatacaagacattgaaacattgtacaaaggtaaaattaaggatgatgctgcaactcaaagtagtgttcataacct |
110 |
Q |
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| T |
28823568 |
agaatatatattataaggcaaacctaatacaagacattgaaacattgtacaaaggtaaaattaaggatgatgctgcaactcaagctagtgttcataacct |
28823667 |
T |
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| Q |
111 |
tggtgtgttggaacatattaattagttatgattgtgtacttggagattcacaaacaagtatagtattaaacagtggatgtagcacatttaacgcatcaaa |
210 |
Q |
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| T |
28823668 |
tggtgtgttggaacatattaattagttatgattgtgtacttggagattcacaaacaagtatagtattaaacagttcatgtagcacatttaacgcatcaaa |
28823767 |
T |
|
| Q |
211 |
cttgcgtagcttctatgcaaatatcaatggaacatttttagatttgaagaatcaaattagcaatcaaagcaagcactttgccacatcacaacaagccata |
310 |
Q |
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| T |
28823768 |
cttgcgtagcttctatgcaaatatcaatggaacatttttagatttgaagaatcaaattagcaatgaaagcaaacactttgccacatcacaacaagccata |
28823867 |
T |
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| Q |
311 |
ggagaggtaattgtattttctatgtttcaatgtagaaattacctctccaaaaatgattgtgttggttgcttcaacattgcctctaccaaaatccgtaatt |
410 |
Q |
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| T |
28823868 |
ggtgaggtaattgtattttctatgtttcaatgtagaaattacctctccaaaaatgattgtgttggttgcttcaacattgcctctaccaaaatccgtagtt |
28823967 |
T |
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| Q |
411 |
gctcagctgctaatggagctagagtcatctatgatg |
446 |
Q |
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| T |
28823968 |
gctcagctgctaatggagctagagtcatctatgatg |
28824003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 223 - 403
Target Start/End: Original strand, 28833033 - 28833216
Alignment:
| Q |
223 |
ctatgcaaatatcaatggaacatttttagatttgaagaatcaaattagcaatcaaagcaagcactttgccacatcacaa---caagccataggagaggta |
319 |
Q |
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| T |
28833033 |
ctatgaaaacatcaacgaaacttttctagatttgagaaatcaaattagcaatcaaagcaagcactttgccacatcacaacaacaagccatagatgaggta |
28833132 |
T |
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| Q |
320 |
attgtattttctatgtttcaatgtagaaattacctctccaaaaatgattgtgttggttgcttcaacattgcctctaccaaaatc |
403 |
Q |
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| T |
28833133 |
aaagtatattctatgtttcaatgtagaaattacctctccaaaaatgattgtgttgcttgcttcaacactgcttctaccgaaatc |
28833216 |
T |
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