View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0680_low_5 (Length: 463)
Name: NF0680_low_5
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0680_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 2557133 - 2557501
Alignment:
| Q |
1 |
tatatacttggcctacacaggttaaatttaagatgtaaacttcaagagttttgaactgtagtaattcaactacaaaaatttatatgtttagttctttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2557133 |
tatatacttggcctacacaggttaaatttaagatgtaaacttcaagagttttgaactgtagtaattcaactacaaaaatttatatgtttagttctttttt |
2557232 |
T |
|
| Q |
101 |
cttattattccataaaa-gttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagtctataaagagcaagaagtttattgtaacattccctt |
199 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2557233 |
cttatttttccataaaaagttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagcctataaagagcaagaagtttattgtaacattccctt |
2557332 |
T |
|
| Q |
200 |
atgagaacagaaagatgtatggagagtataatctaatagtataaccatagtttccaagcatagtactttcatacaaattcatactaataaaaaacatttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2557333 |
atgagaacagaaagatgtatggagagtataatctaatagtataaccatagtttccaagcatagtactttcatacaaattcatactaataaaaaacatttc |
2557432 |
T |
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| Q |
300 |
gattttttcattcttttgtcttcaagtttcttagcttccaattccaagctatcttagacaactatgttg |
368 |
Q |
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| T |
2557433 |
gattttttcattcttttgtcttcaagtttcttagcttccaattccaagctatcttagacaactatgttg |
2557501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 2566993 - 2567356
Alignment:
| Q |
1 |
tatatacttggcctacacaggttaaatttaagatgtaaacttcaagagttttgaactgtagtaattcaactacaaaaatttatatgtttagttctttttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
2566993 |
tatatacttggcctacacaggttaaatttcagatgtaaacttcaaaagttttaaattgtagtaatttaactacaaaaatttatattttcagttctttttt |
2567092 |
T |
|
| Q |
101 |
cttattattccataaa--agttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagtctataaagagcaagaagtttattgtaacattccct |
198 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||| |
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| T |
2567093 |
cttattattccataaataagttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagcctacaaagtgcaagaagtttattgtatcattccct |
2567192 |
T |
|
| Q |
199 |
tatgagaacagaaagatgtatggagagtataatctaatagtataaccatagtttccaagcatagtact---ttcatacaaattcatactaataaaaaaca |
295 |
Q |
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|||||||| ||||||||||||| | |||||||||||| |||| ||||||||||||||||||||||||| ||| | |||||| ||||||| | |||| |
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| T |
2567193 |
tatgagaatagaaagatgtatgaaaagtataatctaagagtacaaccatagtttccaagcatagtactactttcgtgcaaatttatactaa---agaaca |
2567289 |
T |
|
| Q |
296 |
tttcgattttttcattcttttgtcttcaagtttcttagcttccaattccaagctatcttagacaactatgttg |
368 |
Q |
| |
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|| | ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
2567290 |
atttggtttttacattcttttgtcttctagtttcttag------tttccaagctatcttagacaactatgttg |
2567356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 3276668 - 3276807
Alignment:
| Q |
84 |
atgtttagttctttttt-cttattattccataaa--agttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagtctataaagagcaagaag |
180 |
Q |
| |
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||||||||||||||||| | || ||| ||||||| || |||||| | ||||||| |||||||||||| ||||||||||||| ||||||||| ||||||| |
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| T |
3276668 |
atgtttagttcttttttgcatactatcccataaataaggtgtccacgctcttcgctgcaatcttcctgcgcatgatgtccagcctataaagaacaagaag |
3276767 |
T |
|
| Q |
181 |
tttattgtaacattcccttatgagaacagaaagatgtatg |
220 |
Q |
| |
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|| || ||| ||||||||| | |||| || ||||| |||| |
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| T |
3276768 |
ttgatagtatcattcccttgtaagaataggaagatttatg |
3276807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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