View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0680_low_6 (Length: 453)
Name: NF0680_low_6
Description: NF0680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0680_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Complemental strand, 663683 - 663261
Alignment:
| Q |
6 |
atgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtcaattggattaaggtagcc |
105 |
Q |
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| T |
663683 |
atgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtcaattggattaaggtagcc |
663584 |
T |
|
| Q |
106 |
ttcaagttttgcaattatatgttcattaactttataaataggtttttgttaatattttgattgattgtagtcagcctgaattgtttgttttgttagtgtc |
205 |
Q |
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| T |
663583 |
ttcaagttttgcaattatatgttcattaactttataaataggtttttgttaatattttgatcgattgtagtcagcctgaattgtttattttgttagtgtc |
663484 |
T |
|
| Q |
206 |
ttaaattggtttacatttgtttgcaggatgatacacagatcctcactgcttctggtgatcaaacagtgagtcgttgtgttgttatcagtttactattgcc |
305 |
Q |
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| T |
663483 |
ttaaattggtttacatttgtatgcaggatgatacacagatcctcactgcttctggtgatcaaacggtgagttgttgtgttgttctcagtttactattgcc |
663384 |
T |
|
| Q |
306 |
tcctaaaacaatatacagattacattgttgttctttctatgttttgttcttgattctcacatgatacttgttaaatttttaatcaaagttaccacatttt |
405 |
Q |
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| T |
663383 |
tcctaaaacaatatacagattacattgttgttctttctatgttttgttcttgattctcacatgatacttgttaaatttttaatcaaagttaccacatttt |
663284 |
T |
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| Q |
406 |
gaaacactgcattgaaatatgat |
428 |
Q |
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| T |
663283 |
gaaacactgcattgaaatatgat |
663261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 409
Target Start/End: Original strand, 908251 - 908640
Alignment:
| Q |
6 |
atgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtcaattggattaaggtagcc |
105 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
908251 |
atgtgaaattttgcctcttttgataccagagaaagcgagaatttgtgaatggagtttgcataataatgcagtttttgacgtcaattggattaaggtagcc |
908350 |
T |
|
| Q |
106 |
ttcaagttttgcaattatatgttcattaactttataaataggtttttgttaatattttgattgattgtagtcagcctgaattgtttgttttgttagtgtc |
205 |
Q |
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|||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||| |
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| T |
908351 |
ttcattttttgcaattatatgttcattaaatttacaaataggtttttgttaattttttgattgattgtaattagcctgaattgtttattttgttagtgtc |
908450 |
T |
|
| Q |
206 |
ttaaattggtttacatttgtttgcaggatgatacacagatcctcactgcttctggtgatcaaacagtgagtcgttgtgttgttatcagtttactattgcc |
305 |
Q |
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| T |
908451 |
ttaaattggtttacatttgttt--------------agatcctcactgcttctggtggttaaacagtgagtcgttgtgttgttatcagtttactattgtc |
908536 |
T |
|
| Q |
306 |
tcctaaaacaatatacagattacattgttgttctttctatgttttgttcttgattctcacatgatacttgttaaatttttaatcaaagttaccacatttt |
405 |
Q |
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| T |
908537 |
tgctaaaacaatatatagattacattgttgttcttgctatgttttgttcttgattctcacatgatacttgttaaattttgaatcaaatttaccgcatttt |
908636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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