View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0681_high_2 (Length: 390)
Name: NF0681_high_2
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0681_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 88 - 390
Target Start/End: Complemental strand, 35744150 - 35743851
Alignment:
| Q |
88 |
catcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaaaccaacacaaa |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744150 |
catcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaaaccaacacaaa |
35744051 |
T |
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| Q |
188 |
caccttctcatctgcaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctcccctacctgcaccattcacgataatgccnnnnnnngt |
287 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
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| T |
35744050 |
caccttctcatctacaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctcccctacctgcaccattc---atgatgccaaaaaaagt |
35743954 |
T |
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| Q |
288 |
acagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgctgcaaccaaatgtggcagtgcccccaccttcaactcctcctccacct |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743953 |
acagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgctgcaaccaaatgtggcagtgcccccaccttcaactcctcctccacct |
35743854 |
T |
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