View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0681_high_8 (Length: 298)
Name: NF0681_high_8
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0681_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 29235309 - 29235229
Alignment:
| Q |
22 |
catcatcattgattggaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
102 |
Q |
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| T |
29235309 |
catcttcattgattggaatgctgcaaccatcttcaataatataccatagttcttcataaagatctatgacatgactataca |
29235229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 29348608 - 29348528
Alignment:
| Q |
22 |
catcatcattgattggaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
102 |
Q |
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| T |
29348608 |
catcttcattgattggaatgctgcaaccatcttcaataatataccatagttcttcataaagatctatgacatgactataca |
29348528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 16800932 - 16800867
Alignment:
| Q |
37 |
gaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
102 |
Q |
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|||||||| |||||||||| || ||||||||||||||||||| |||| |||| |||||||||||| |
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| T |
16800932 |
gaatgctaaaaccatcttcgattatatctcatagttcttcatcaagaactatatcatgactataca |
16800867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 18085561 - 18085487
Alignment:
| Q |
28 |
cattgattggaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
102 |
Q |
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|||||| ||||||||||||||||| |||||| ||| | ||||||||||||| |||| ||||||||||||||||| |
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| T |
18085561 |
cattgactggaatgctacaaccatattcaattataccccatagttcttcatcaagagttatgacatgactataca |
18085487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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