View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0681_low_11 (Length: 327)

Name: NF0681_low_11
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0681_low_11
NF0681_low_11
[»] chr7 (25 HSPs)
chr7 (211-308)||(38837217-38837324)
chr7 (211-308)||(7389389-7389496)
chr7 (208-308)||(38267037-38267147)
chr7 (211-314)||(3434562-3434675)
chr7 (211-306)||(4999509-4999614)
chr7 (211-305)||(11044188-11044282)
chr7 (210-308)||(35137532-35137640)
chr7 (211-308)||(8080376-8080483)
chr7 (211-308)||(36361906-36362013)
chr7 (210-308)||(19329841-19329949)
chr7 (211-308)||(36362026-36362133)
chr7 (210-308)||(31735883-31735984)
chr7 (212-308)||(32951486-32951592)
chr7 (214-308)||(3783998-3784102)
chr7 (211-308)||(19436180-19436287)
chr7 (211-308)||(40957707-40957814)
chr7 (266-308)||(3694432-3694474)
chr7 (211-247)||(35468919-35468955)
chr7 (211-266)||(22343361-22343416)
chr7 (211-266)||(46374847-46374902)
chr7 (277-319)||(35522952-35522994)
chr7 (210-266)||(8238211-8238268)
chr7 (211-248)||(10343626-10343663)
chr7 (210-266)||(21234400-21234456)
chr7 (209-249)||(39255985-39256025)
[»] chr4 (19 HSPs)
chr4 (211-308)||(42044360-42044467)
chr4 (198-308)||(11511455-11511575)
chr4 (211-308)||(48183042-48183149)
chr4 (209-308)||(6034042-6034151)
chr4 (206-308)||(41236342-41236454)
chr4 (211-305)||(50052424-50052528)
chr4 (211-308)||(480440-480547)
chr4 (211-308)||(29234238-29234345)
chr4 (208-308)||(54473526-54473636)
chr4 (211-308)||(24995100-24995207)
chr4 (211-305)||(29239886-29239990)
chr4 (210-305)||(3481653-3481758)
chr4 (266-319)||(41823947-41824000)
chr4 (211-306)||(23608235-23608340)
chr4 (209-266)||(50526216-50526273)
chr4 (209-308)||(31910190-31910299)
chr4 (210-266)||(40574778-40574834)
chr4 (211-266)||(55475191-55475246)
chr4 (266-308)||(53352559-53352601)
[»] chr5 (18 HSPs)
chr5 (212-306)||(36875607-36875702)
chr5 (210-308)||(40145406-40145514)
chr5 (214-306)||(18520879-18520981)
chr5 (210-308)||(33149631-33149739)
chr5 (211-308)||(2740274-2740381)
chr5 (211-308)||(36732935-36733042)
chr5 (209-308)||(35785197-35785306)
chr5 (210-308)||(42414295-42414403)
chr5 (211-304)||(13811652-13811755)
chr5 (210-306)||(14831813-14831919)
chr5 (210-308)||(28177774-28177882)
chr5 (268-313)||(31132411-31132456)
chr5 (211-305)||(35943888-35943992)
chr5 (211-266)||(3921310-3921365)
chr5 (266-301)||(31009053-31009088)
chr5 (266-308)||(15409603-15409645)
chr5 (210-252)||(26720515-26720557)
chr5 (210-252)||(26990264-26990306)
[»] chr3 (25 HSPs)
chr3 (210-308)||(53982010-53982118)
chr3 (209-308)||(33644198-33644307)
chr3 (211-308)||(49607414-49607521)
chr3 (216-308)||(52629305-52629407)
chr3 (211-305)||(8076393-8076497)
chr3 (211-308)||(17470405-17470512)
chr3 (211-308)||(54868888-54868995)
chr3 (212-308)||(31456690-31456796)
chr3 (211-304)||(27714888-27714991)
chr3 (211-266)||(11095398-11095453)
chr3 (210-308)||(26141525-26141633)
chr3 (215-314)||(48587078-48587187)
chr3 (211-266)||(33118896-33118951)
chr3 (216-266)||(26754700-26754750)
chr3 (209-263)||(45058601-45058654)
chr3 (211-263)||(14623887-14623939)
chr3 (211-263)||(24700002-24700054)
chr3 (211-308)||(51419353-51419460)
chr3 (211-266)||(36707469-36707524)
chr3 (277-308)||(41189757-41189788)
chr3 (211-266)||(47531865-47531920)
chr3 (208-266)||(30801778-30801836)
chr3 (211-263)||(8956762-8956814)
chr3 (211-263)||(35536626-35536678)
chr3 (280-308)||(47531944-47531972)
[»] chr2 (25 HSPs)
chr2 (211-308)||(17473020-17473127)
chr2 (211-319)||(7465717-7465835)
chr2 (211-305)||(33436096-33436200)
chr2 (211-308)||(9058480-9058587)
chr2 (214-306)||(28863458-28863560)
chr2 (210-308)||(13438342-13438450)
chr2 (211-308)||(10249375-10249482)
chr2 (208-308)||(40701475-40701585)
chr2 (210-308)||(28381648-28381756)
chr2 (211-308)||(5574481-5574588)
chr2 (211-308)||(30915463-30915570)
chr2 (211-308)||(32505641-32505748)
chr2 (214-308)||(19930813-19930917)
chr2 (210-305)||(27864703-27864808)
chr2 (210-308)||(40613895-40614003)
chr2 (211-308)||(38273135-38273242)
chr2 (211-305)||(20700815-20700919)
chr2 (211-263)||(33436211-33436263)
chr2 (209-308)||(4060683-4060792)
chr2 (211-308)||(38882804-38882913)
chr2 (212-252)||(41575138-41575178)
chr2 (211-266)||(26891549-26891604)
chr2 (277-308)||(42257269-42257300)
chr2 (217-266)||(3439985-3440034)
chr2 (210-266)||(43490120-43490176)
[»] chr1 (19 HSPs)
chr1 (209-308)||(9474869-9474978)
chr1 (211-308)||(2581915-2582022)
chr1 (210-308)||(47452313-47452421)
chr1 (211-308)||(3000319-3000426)
chr1 (208-308)||(48716275-48716385)
chr1 (210-308)||(27564728-27564836)
chr1 (211-308)||(38595154-38595261)
chr1 (211-308)||(38632314-38632421)
chr1 (207-319)||(44548358-44548480)
chr1 (211-308)||(8346381-8346488)
chr1 (211-308)||(32813247-32813354)
chr1 (211-308)||(41758805-41758912)
chr1 (211-308)||(50630458-50630565)
chr1 (211-301)||(51898683-51898783)
chr1 (266-308)||(43197-43239)
chr1 (266-311)||(13414826-13414871)
chr1 (207-266)||(50591045-50591104)
chr1 (210-266)||(37649197-37649253)
chr1 (218-266)||(26440741-26440789)
[»] chr8 (25 HSPs)
chr8 (210-308)||(15197332-15197440)
chr8 (211-308)||(12831047-12831154)
chr8 (210-308)||(504114-504222)
chr8 (210-308)||(34012289-34012397)
chr8 (211-308)||(14547922-14548029)
chr8 (208-308)||(40423936-40424046)
chr8 (210-308)||(23122590-23122698)
chr8 (211-308)||(1179933-1180040)
chr8 (211-308)||(44507080-44507187)
chr8 (210-305)||(20074938-20075035)
chr8 (211-305)||(10284627-10284731)
chr8 (211-301)||(37038479-37038579)
chr8 (210-308)||(43414574-43414682)
chr8 (212-305)||(5957831-5957934)
chr8 (266-305)||(8841428-8841467)
chr8 (203-306)||(15048177-15048289)
chr8 (268-308)||(9122252-9122292)
chr8 (212-250)||(9122196-9122234)
chr8 (211-252)||(4854922-4854963)
chr8 (216-308)||(10621080-10621182)
chr8 (211-266)||(16383377-16383432)
chr8 (211-266)||(34307216-34307271)
chr8 (211-252)||(30479533-30479574)
chr8 (211-266)||(24307838-24307893)
chr8 (211-308)||(25838197-25838296)
[»] chr6 (14 HSPs)
chr6 (214-308)||(22880651-22880755)
chr6 (210-308)||(32869677-32869785)
chr6 (210-308)||(17598553-17598661)
chr6 (211-308)||(6209458-6209565)
chr6 (211-308)||(29857827-29857934)
chr6 (211-308)||(11427616-11427725)
chr6 (208-308)||(31109393-31109503)
chr6 (211-308)||(31976248-31976355)
chr6 (208-266)||(15508069-15508127)
chr6 (266-308)||(23128120-23128162)
chr6 (211-308)||(31110754-31110859)
chr6 (211-266)||(15990087-15990142)
chr6 (211-266)||(30341405-30341460)
chr6 (210-263)||(31953078-31953131)
[»] scaffold0237 (1 HSPs)
scaffold0237 (211-308)||(4029-4136)
[»] scaffold1268 (1 HSPs)
scaffold1268 (210-305)||(925-1030)
[»] scaffold1267 (1 HSPs)
scaffold1267 (210-305)||(925-1030)
[»] scaffold0321 (1 HSPs)
scaffold0321 (266-308)||(10102-10144)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 38837217 - 38837324
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||          |||||||||||||||||||||||||||||||||||    
T  38837217 gagtaatgatacatagacacccttaggtggcaatacacccttgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 38837316  T
Q  301 tcttttct 308  Q
    ||||||||    
T  38837317 tcttttct 38837324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 7389389 - 7389496
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| ||||||||||| |||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  7389389 gagtaatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 7389488  T
Q  301 tcttttct 308  Q
    ||||||||    
T  7389489 tcttttct 7389496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 38267037 - 38267147
Alignment:
Q  208 tttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacact 297  Q
    ||||||||||||||||||||||||||||  || ||||||||||||  ||||||||||||          |||||||||||||||||||||||||||||||    
T  38267037 tttgagtaatgatacatagacacccttatgtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacact 38267136  T
Q  298 ttctcttttct 308  Q
    |||||||||||    
T  38267137 ttctcttttct 38267147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 314
Target Start/End: Original strand, 3434562 - 3434675
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||| |||||| |||||||||||||||  ||||||||||||          |||||||||||||| |||||||||||||||||||    
T  3434562 gagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacactttc 3434661  T
Q  301 tcttttctatcttc 314  Q
    |||||||| |||||    
T  3434662 tcttttctctcttc 3434675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 4999614 - 4999509
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||  |||||||||||          ||||||||||||||||||||||||| |||||||||    
T  4999614 gagtaatgatacatagacacccttagatggcaatacaccttttgacacccacacaaaaatctgatacgtagtcacgtggaccccgcacaaacacactttc 4999515  T
Q  301 tctttt 306  Q
    ||||||    
T  4999514 tctttt 4999509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 11044188 - 11044282
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaacgtagtcacgtggaccccgcacaagcacactttctcttt 305  Q
    |||||||||||||||||||||||||| |||||||||| ||||  ||||||     |||||||||||||||||||||||||| |||||||||||||    
T  11044188 gagtaatgatacatagacacccttaggtggcaatacatcctttgacacccctgacacgtagtcacgtggaccccgcacaagtacactttctcttt 11044282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 35137532 - 35137640
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    |||||||||||| |||||||||||||| |||||||||||||||  |||||||||||          ||||||||||||||||||||||||| ||||||||    
T  35137532 tgagtaatgataaatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaaacacacttt 35137631  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  35137632 ctcttttct 35137640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 8080483 - 8080376
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||| ||| ||          ||||||||||||||||||||||||||||||||||    
T  8080483 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 8080384  T
Q  301 tcttttct 308  Q
    ||||||||    
T  8080383 tcttttct 8080376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 36362013 - 36361906
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||| ||||  |||||||||||          ||||||||||||||||||| |||||||||||||||    
T  36362013 gagtaatgatacatagacacccttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttc 36361914  T
Q  301 tcttttct 308  Q
    ||||||||    
T  36361913 tcttttct 36361906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 19329841 - 19329949
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacacttt 299  Q
    |||||||||||||||||||| |||||| |||||||||||| ||  ||||||||||||          |||| ||||||||||||||||||||||||||||    
T  19329841 tgagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacacttt 19329940  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  19329941 ctcttttct 19329949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 36362026 - 36362133
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| ||| |||||| ||||  ||||||||||||          |||||||||||||||||| |||||||||||||||    
T  36362026 gagtaatgatacatagacacccttaggtggtaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttc 36362125  T
Q  301 tcttttct 308  Q
    ||||||||    
T  36362126 tcttttct 36362133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 31735883 - 31735984
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca---acgtagtcacgtggaccccgcacaagcacactttctctttt 306  Q
    ||||| |||||||||||||| |||||| ||||||||||| |||  |||||||||||   |||| | ||| |||| |||||||||||||||||||||||||    
T  31735883 tgagttatgatacatagacatccttaggtggcaatacactctttaacacccacacaaacacgtggccacatggatcccgcacaagcacactttctctttt 31735982  T
Q  307 ct 308  Q
    ||    
T  31735983 ct 31735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 32951592 - 32951486
Alignment:
Q  212 agtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttct 301  Q
    ||||||||||||||||||| |||||||| ||||||| ||||  ||| ||||||||          |||||||||||||||||||||||||||||||||||    
T  32951592 agtaatgatacatagacactcttagatgacaatacatcctttaacatccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttct 32951493  T
Q  302 cttttct 308  Q
    |||||||    
T  32951492 cttttct 32951486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 3783998 - 3784102
Alignment:
Q  214 taatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttctct 303  Q
    ||||||||||||||||||||||| |||||||||| | ||  ||||||||||||          |||||||||||||| ||||||||||||||||||||||    
T  3783998 taatgatacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctct 3784097  T
Q  304 tttct 308  Q
    |||||    
T  3784098 tttct 3784102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 19436287 - 19436180
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||| |||||| || ||||||||| ||  ||||||||||||          |||||||||||||| |||||| ||||||||||||    
T  19436287 gagtaatgatacatagacatccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagcacactttc 19436188  T
Q  301 tcttttct 308  Q
    ||||||||    
T  19436187 tcttttct 19436180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 40957707 - 40957814
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||| ||||| ||||||||||| |||  | ||||||||||          |||||||||||||| |||| ||||||||||||||    
T  40957707 gagtaatgatacatagacactcttaggtggcaatacactctttgatacccacacaaaaatctgacacgtagtcacgtggatcccgtacaagcacactttc 40957806  T
Q  301 tcttttct 308  Q
    ||||||||    
T  40957807 tcttttct 40957814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 3694432 - 3694474
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttctcttttct 308  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  3694432 acgtagtcatgtggatcccgcacaagcacactttctcttttct 3694474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 35468955 - 35468919
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaataca 247  Q
    ||||||||||||||||||| |||||||||||||||||    
T  35468955 gagtaatgatacatagacatccttagatggcaataca 35468919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 22343361 - 22343416
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| |||||||||| |||||||||| ||||||||||||| |  ||||||||||||    
T  22343361 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaa 22343416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 46374902 - 46374847
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| |||||||||||||| |||||| |||||| ||||||||  ||||||||||||    
T  46374902 gagttatgatacatagacatccttaggtggcaacacaccctttaacacccacacaa 46374847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 35522952 - 35522994
Alignment:
Q  277 tggaccccgcacaagcacactttctcttttctatcttcatctc 319  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||    
T  35522952 tggatcccgcacaagcacactttctcttttctctcttcttctc 35522994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 8238211 - 8238268
Alignment:
Q  210 tgagtaatgatacatagacaccct-tagatggcaatacacccttgtacacccacacaa 266  Q
    ||||| |||||||||| ||||||| ||| |||||||||||||||  ||||||||||||    
T  8238211 tgagttatgatacataaacaccctgtaggtggcaatacaccctttgacacccacacaa 8238268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 10343663 - 10343626
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacac 248  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  10343663 gagtaatgatacatagacacccttaggtggaaatacac 10343626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 21234400 - 21234456
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    ||||| |||||||||||||| |||||| || ||||||||||||  |||| |||||||    
T  21234400 tgagttatgatacatagacatccttaggtgacaatacaccctttgacactcacacaa 21234456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 39256025 - 39255985
Alignment:
Q  209 ttgagtaatgatacatagacacccttagatggcaatacacc 249  Q
    |||||| |||||||||||||| |||||| ||||||||||||    
T  39256025 ttgagttatgatacatagacaaccttaggtggcaatacacc 39255985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 42044467 - 42044360
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  42044467 gagtaatgatacatagacacccttaggtggcaatacatccttgtacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 42044368  T
Q  301 tcttttct 308  Q
    ||||||||    
T  42044367 tcttttct 42044360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 198 - 308
Target Start/End: Complemental strand, 11511575 - 11511455
Alignment:
Q  198 attaaaattatttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgca 287  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| |          ||||||||||||||||||||||    
T  11511575 attataattttttgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgca 11511476  T
Q  288 caagcacactttctcttttct 308  Q
    |||||||||||||||||||||    
T  11511475 caagcacactttctcttttct 11511455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 48183149 - 48183042
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||  |||||||||||||||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  48183149 gagtaatgatacatagacacccttacgtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 48183050  T
Q  301 tcttttct 308  Q
    ||||||||    
T  48183049 tcttttct 48183042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 6034042 - 6034151
Alignment:
Q  209 ttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactt 298  Q
    |||||||||||||||||||||||||||| |||||||||||||||  |||||||||||          | ||||||||||||| |||||||||||||||||    
T  6034042 ttgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactt 6034141  T
Q  299 tctcttttct 308  Q
    ||||||||||    
T  6034142 tctcttttct 6034151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 41236342 - 41236454
Alignment:
Q  206 tatttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcaca 295  Q
    |||| |||||||||||||||||||||||||| |||||||||||| ||  ||| ||||||||          |||||||||||||||||||||||||||||    
T  41236342 tattcgagtaatgatacatagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 41236441  T
Q  296 ctttctcttttct 308  Q
    |||||||||||||    
T  41236442 ctttctcttttct 41236454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 50052528 - 50052424
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||| |||||| |||||||||||||||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  50052528 gagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 50052429  T
Q  301 tcttt 305  Q
    |||||    
T  50052428 tcttt 50052424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 480547 - 480440
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| || ||||||||||||  |||||||||||          |||||||||||||||||||| ||||||||||||||    
T  480547 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 480448  T
Q  301 tcttttct 308  Q
    ||||||||    
T  480447 tcttttct 480440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 29234345 - 29234238
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||  |||||          ||||||||||||||||||||||||||||||||||    
T  29234345 gagtaatgatacatagacacccttagatggcaatacaccctttgataccttcacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 29234246  T
Q  301 tcttttct 308  Q
    ||||||||    
T  29234245 tcttttct 29234238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 54473636 - 54473526
Alignment:
Q  208 tttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacact 297  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||  ||||||||||||          |||||||||||||||||||||||||||||||    
T  54473636 tttgagtaatgatacatagacacccttaggtgacaatacaccatttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacact 54473537  T
Q  298 ttctcttttct 308  Q
    || ||||||||    
T  54473536 ttatcttttct 54473526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 24995207 - 24995100
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||| || |||||||||||||||||||||||||||  ||||||||| ||          ||||||||||||||||||||||||||||| ||||    
T  24995207 gagtaatgatatatggacacccttagatggcaatacaccctttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacattttc 24995108  T
Q  301 tcttttct 308  Q
    ||||||||    
T  24995107 tcttttct 24995100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 29239886 - 29239990
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||| ||  ||| |||||||          ||||||||||||||||||| |||||||||||||||    
T  29239886 gagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacactttc 29239985  T
Q  301 tcttt 305  Q
    |||||    
T  29239986 tcttt 29239990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 3481653 - 3481758
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    |||||||||||||||||||||| |||| ||||||||||| |||  |||||||||||          || |||||||||||||||| ||||||||||||||    
T  3481653 tgagtaatgatacatagacacctttaggtggcaatacactctttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagcacacttt 3481752  T
Q  300 ctcttt 305  Q
    ||||||    
T  3481753 ctcttt 3481758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 41823947 - 41824000
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttctcttttctatcttcatctc 319  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  41823947 acgtagtcacatggaccccgcacaagcacactttctcttttctctcttcttctc 41824000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 23608235 - 23608340
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||  |||||||||||          ||||||||||||| || || |||||||||||||||    
T  23608235 gagtaatgatatatagacacccttagatgacaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtgaactccacacaagcacactttc 23608334  T
Q  301 tctttt 306  Q
    ||||||    
T  23608335 tctttt 23608340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 50526273 - 50526216
Alignment:
Q  209 ttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    ||||||||||||||||||||| | |||| |||||||||||||||  ||||||||||||    
T  50526273 ttgagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaa 50526216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 31910190 - 31910299
Alignment:
Q  209 ttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactt 298  Q
    |||||| |||||||||||||| |||||| || |||||||| |||  ||||||||||||          | ||| ||| ||||||||||||||||||||||    
T  31910190 ttgagttatgatacatagacatccttaggtgacaatacactctttgacacccacacaaaaatctgacacatagccacatggaccccgcacaagcacactt 31910289  T
Q  299 tctcttttct 308  Q
    ||||||||||    
T  31910290 tctcttttct 31910299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 40574778 - 40574834
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    ||||| |||||||||||||| |||||| ||| |||||||||||  ||||||||||||    
T  40574778 tgagttatgatacatagacatccttaggtggtaatacaccctttgacacccacacaa 40574834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 55475191 - 55475246
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| |||||||||| ||| |||||| |||||||||||||||  ||||||||||||    
T  55475191 gagttatgatacataaacatccttaggtggcaatacaccctttgacacccacacaa 55475246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 53352601 - 53352559
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttctcttttct 308  Q
    ||||||| | |||||||||||||||||| ||||||||||||||    
T  53352601 acgtagttaagtggaccccgcacaagcatactttctcttttct 53352559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 36875702 - 36875607
Alignment:
Q  212 agtaatgatacatagacacccttagatggcaatacacccttgtacacccacac-aacgtagtcacgtggaccccgcacaagcacactttctctttt 306  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||  |||||||||||| |||||||||||||||||||||||||    
T  36875702 agtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatagtcacgtggatcccgcacaagcacactttctctttt 36875607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 40145406 - 40145514
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||| ||||||||          |||||||||||||||||||||||||||||||||    
T  40145406 tgagtaatgatacatagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 40145505  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  40145506 ctcttttct 40145514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 18520981 - 18520879
Alignment:
Q  214 taatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttctct 303  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  18520981 taatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 18520882  T
Q  304 ttt 306  Q
    |||    
T  18520881 ttt 18520879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 33149739 - 33149631
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||| ||| |||||||||||  |||||||||||          ||||||||||||||| ||||||||||||||||||    
T  33149739 tgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacacttt 33149640  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  33149639 ctcttttct 33149631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 2740274 - 2740381
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||| |||||| |||||||||||||||  |||||||||||          ||||||||||||||| |||||||||||||||||||    
T  2740274 gagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 2740373  T
Q  301 tcttttct 308  Q
    ||||||||    
T  2740374 tcttttct 2740381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 36733042 - 36732935
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| | |||||||||||||  ||||||||||||          | ||||||||||||||||||||||||||||||||    
T  36733042 gagtaatgatacatagacacccttaggtagcaatacaccctttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacactttc 36732943  T
Q  301 tcttttct 308  Q
    ||||||||    
T  36732942 tcttttct 36732935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 35785197 - 35785306
Alignment:
Q  209 ttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactt 298  Q
    |||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||          ||||||| ||||||| ||||||||| |||||||    
T  35785197 ttgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggatcccgcacaatcacactt 35785296  T
Q  299 tctcttttct 308  Q
    ||||||||||    
T  35785297 tctcttttct 35785306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 42414403 - 42414295
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||  ||| |||||||||||||||  |||||||||||          ||||||||| ||||||||||||||||||||||||    
T  42414403 tgagtaatgatacatagacaccagtaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 42414304  T
Q  300 ctcttttct 308  Q
     ||||||||    
T  42414303 atcttttct 42414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 13811652 - 13811755
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||| ||||||||||||||||||| |||||||||| | ||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  13811652 gagtaaagatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 13811751  T
Q  301 tctt 304  Q
    ||||    
T  13811752 tctt 13811755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 14831813 - 14831919
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  ||||||||| |          ||||||||||||||| ||||||||||||||||||    
T  14831813 tgagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 14831912  T
Q  300 ctctttt 306  Q
    || ||||    
T  14831913 ctttttt 14831919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 28177774 - 28177882
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||| |||||||||||||| |||||| |||||||||||||||  |||||||||||          |||| ||||| |||||||||||||| ||||||||    
T  28177774 tgagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacacttt 28177873  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  28177874 ctcttttct 28177882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 31132411 - 31132456
Alignment:
Q  268 gtagtcacgtggaccccgcacaagcacactttctcttttctatctt 313  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||    
T  31132411 gtagtcacgtggaccccgcacaagcatactttttcttttctctctt 31132456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 35943992 - 35943888
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||| ||||||||||||||||||||| |||||||||| | ||  |||||||||||          ||||||| ||||||| ||| |||||||||||||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagcacactttc 35943893  T
Q  301 tcttt 305  Q
    |||||    
T  35943892 tcttt 35943888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 3921365 - 3921310
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| |||||||||| |||||||||| ||||||||||||| |  ||||||||||||    
T  3921365 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaa 3921310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 31009053 - 31009088
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttct 301  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31009053 acgtagtcacgtggatcccgcacaagcacactttct 31009088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 15409645 - 15409603
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttctcttttct 308  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||    
T  15409645 acgtagccacatggaccccgcacaagcacactctctcttttct 15409603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 26720515 - 26720557
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacaccctt 252  Q
    ||||| |||||||||||||| |||||| |||||||||||||||    
T  26720515 tgagttatgatacatagacatccttaggtggcaatacaccctt 26720557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 26990264 - 26990306
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacaccctt 252  Q
    ||||| |||||||||||||| |||||| |||||||||||||||    
T  26990264 tgagttatgatacatagacatccttaggtggcaatacaccctt 26990306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 53982010 - 53982118
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||          ||||||||||||||||||||||||||||||||||    
T  53982010 tgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 53982109  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  53982110 ctcttttct 53982118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 33644198 - 33644307
Alignment:
Q  209 ttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactt 298  Q
    |||||||||||||||||||||||||| | |||||||||||||||  ||||||||||||          ||||||||||||||||||||||||||||||||    
T  33644198 ttgagtaatgatacatagacacccttgggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 33644297  T
Q  299 tctcttttct 308  Q
    ||||||||||    
T  33644298 tctcttttct 33644307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 49607414 - 49607521
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||||||||          ||||||||||||||| ||| |||||||||||||||    
T  49607414 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttc 49607513  T
Q  301 tcttttct 308  Q
    ||||||||    
T  49607514 tcttttct 49607521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 52629305 - 52629407
Alignment:
Q  216 atgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttctcttt 305  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||||          |||||||||||||||||||| |||||||||||||||||||    
T  52629305 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttt 52629404  T
Q  306 tct 308  Q
    |||    
T  52629405 tct 52629407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 8076393 - 8076497
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||| |||||||||| ||||| |||||||||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttc 8076492  T
Q  301 tcttt 305  Q
    |||||    
T  8076493 tcttt 8076497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 17470405 - 17470512
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||||| |||| |||||||||||| ||  ||||||||||||          |||||||||||||||||| |||||||||||||||    
T  17470405 gagtaatgatacatagacacctttaggtggcaatacaccttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttc 17470504  T
Q  301 tcttttct 308  Q
    ||||||||    
T  17470505 tcttttct 17470512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 54868995 - 54868888
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||| ||  |||||||||||          ||||||| ||||||||||||||||| |||||||||    
T  54868995 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacactttc 54868896  T
Q  301 tcttttct 308  Q
    ||||||||    
T  54868895 tcttttct 54868888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 31456690 - 31456796
Alignment:
Q  212 agtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttct 301  Q
    ||||||||||||||||||||| |||  ||||||||||||||  ||||||||||||          |||||||| ||||||||||||||||||||||||||    
T  31456690 agtaatgatacatagacacccataggcggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttct 31456789  T
Q  302 cttttct 308  Q
    |||||||    
T  31456790 cttttct 31456796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 27714991 - 27714888
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||||| |||| ||| |||||||||||  |||||||||||          ||||||||| |||||||||||||||||||||||||    
T  27714991 gagtaatgatacatagacacctttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttc 27714892  T
Q  301 tctt 304  Q
    ||||    
T  27714891 tctt 27714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 11095453 - 11095398
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  11095453 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaa 11095398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 26141633 - 26141525
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||| |||||||||||||| |||||| |||||||||||||||  |||||||||||          |||| ||||| |||||||| ||||||||||||||    
T  26141633 tgagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcacacttt 26141534  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  26141533 ctcttttct 26141525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 48587187 - 48587078
Alignment:
Q  215 aatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttctctt 304  Q
    ||||||||||||| |||||||| |||||||||||||||  ||||| ||| ||          |||||||||||||| |||||||||| ||||||||||||    
T  48587187 aatgatacatagatacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggatcccgcacaagtacactttctctt 48587088  T
Q  305 ttctatcttc 314  Q
    |||| |||||    
T  48587087 ttctctcttc 48587078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 33118951 - 33118896
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| ||||||||||||||||||||| || ||||||||||||  ||||||||||||    
T  33118951 gagttatgatacatagacacccttaggtgacaatacaccctttgacacccacacaa 33118896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 26754700 - 26754750
Alignment:
Q  216 atgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    ||||| ||||||||||||||| |||||||||||||||| ||| ||||||||    
T  26754700 atgattcatagacacccttaggtggcaatacacccttggacatccacacaa 26754750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 45058654 - 45058601
Alignment:
Q  209 ttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccaca 263  Q
    |||||| |||||||||| |||||||||| |||||||||||||||| |||||||||    
T  45058654 ttgagttatgatacataaacacccttaggtggcaatacacccttg-acacccaca 45058601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 14623939 - 14623887
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccaca 263  Q
    ||||||||||||||||||| |||||| ||||||||||||| |  |||||||||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatacaccccttgacacccaca 14623887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 24700054 - 24700002
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccaca 263  Q
    ||||||||||||||||||| |||||| |||||||||||| ||  |||||||||    
T  24700054 gagtaatgatacatagacatccttagttggcaatacaccttttgacacccaca 24700002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 51419460 - 51419353
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||| |||||||||||||| ||||||||| ||||||| ||||  |||||||||||          |||| | ||| | ||||||||||||||||||||||    
T  51419460 gagttatgatacatagacatccttagatgacaatacatcctttaacacccacacaaaaatctgacacgtggccacatagaccccgcacaagcacactttc 51419361  T
Q  301 tcttttct 308  Q
    ||||||||    
T  51419360 tcttttct 51419353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 36707524 - 36707469
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    ||||||||||||||||| |||||||| || ||||||||||||  ||| ||||||||    
T  36707524 gagtaatgatacatagatacccttaggtgacaatacaccctttgacatccacacaa 36707469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 308
Target Start/End: Complemental strand, 41189788 - 41189757
Alignment:
Q  277 tggaccccgcacaagcacactttctcttttct 308  Q
    ||||||||||||||||||||||||||||||||    
T  41189788 tggaccccgcacaagcacactttctcttttct 41189757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 47531865 - 47531920
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| |||||||||||||| ||||||||||||||||||| ||  ||| ||||||||    
T  47531865 gagttatgatacatagacatccttagatggcaatacaccttttaacatccacacaa 47531920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 30801836 - 30801778
Alignment:
Q  208 tttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||||| |||||||||||||||||||||| ||  |||||||||||  | ||||||||||    
T  30801836 tttgagcaatgatacatagacacccttaggtgataatacaccctttgatacccacacaa 30801778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 8956762 - 8956814
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccaca 263  Q
    ||||||||||||||||||| |||||  |||||||||| ||||  |||||||||    
T  8956762 gagtaatgatacatagacatccttatgtggcaatacatcctttgacacccaca 8956814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 35536626 - 35536678
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccaca 263  Q
    ||||||||||||||||||| |||||  |||||||||||| ||  |||||||||    
T  35536626 gagtaatgatacatagacatccttatgtggcaatacaccatttgacacccaca 35536678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 308
Target Start/End: Original strand, 47531944 - 47531972
Alignment:
Q  280 accccgcacaagcacactttctcttttct 308  Q
    |||||||||||||||||||||||||||||    
T  47531944 accccgcacaagcacactttctcttttct 47531972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 17473020 - 17473127
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||          ||||||||||||||| |||||||||||||||||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 17473119  T
Q  301 tcttttct 308  Q
    ||||||||    
T  17473120 tcttttct 17473127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 7465835 - 7465717
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||          ||||||||||||||||||| |||||||||||||||    
T  7465835 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttc 7465736  T
Q  301 tcttttctatcttcatctc 319  Q
    |||||| | ||||| ||||    
T  7465735 tcttttatctcttcttctc 7465717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 33436200 - 33436096
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||||||||          |||||||||||||||||||||||||||||||||||    
T  33436200 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttc 33436101  T
Q  301 tcttt 305  Q
    |||||    
T  33436100 tcttt 33436096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 9058480 - 9058587
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||||||||          ||||||||| |||||||||||||||||||||||||    
T  9058480 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttc 9058579  T
Q  301 tcttttct 308  Q
    ||||||||    
T  9058580 tcttttct 9058587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 28863458 - 28863560
Alignment:
Q  214 taatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttctct 303  Q
    ||||||||||||||||||||||| |||||||||||||||  |||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  28863458 taatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctct 28863557  T
Q  304 ttt 306  Q
    |||    
T  28863558 ttt 28863560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 13438342 - 13438450
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||| || ||||||| ||||  ||||||||||||          |||||||||||||||||||||||||||||||||    
T  13438342 tgagtaatgatacatagacacccttaggtgacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 13438441  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  13438442 ctcttttct 13438450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 10249482 - 10249375
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| || ||||||||| ||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  10249482 gagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 10249383  T
Q  301 tcttttct 308  Q
    ||||||||    
T  10249382 tcttttct 10249375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 40701475 - 40701585
Alignment:
Q  208 tttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacact 297  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||          ||||||| ||||||||||||||||| ||||||    
T  40701475 tttgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacact 40701574  T
Q  298 ttctcttttct 308  Q
    |||||||||||    
T  40701575 ttctcttttct 40701585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 28381756 - 28381648
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||          |||||||||| ||||| |||||||||||||||||    
T  28381756 tgagtaatgatacatagacacccttaggtggcaatacacctttcgacacccacacaaaaatctgacacgtagtcacatggactccgcacaagcacacttt 28381657  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  28381656 ctcttttct 28381648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 5574588 - 5574481
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||| ||||| |||||||||||||||  ||||||||| ||          |||||||||||||| |||||||||||||||||||    
T  5574588 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 5574489  T
Q  301 tcttttct 308  Q
    ||||||||    
T  5574488 tcttttct 5574481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 30915463 - 30915570
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||||||  || |||||| ||          ||||||||||||||||||| ||||||||||||||    
T  30915463 gagtaatgatacatagacacccttaggtggcaatacaccctttgacccccacataaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 30915562  T
Q  301 tcttttct 308  Q
    ||||||||    
T  30915563 tcttttct 30915570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 32505748 - 32505641
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| || ||||||||| ||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  32505748 gagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 32505649  T
Q  301 tcttttct 308  Q
    | ||||||    
T  32505648 tattttct 32505641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 308
Target Start/End: Complemental strand, 19930917 - 19930813
Alignment:
Q  214 taatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttctct 303  Q
    ||||||||||||||||||||||| |||||||||||||||  ||| |||||||          ||||||||| ||||||||||||||| ||||||||||||    
T  19930917 taatgatacatagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaacacactttctct 19930818  T
Q  304 tttct 308  Q
    |||||    
T  19930817 tttct 19930813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 27864703 - 27864808
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||  |||||||||||||||  ||| |||||||          ||||| |||||||||||||||| |||||||||||    
T  27864703 tgagtaatgatacatagacacccttatgtggcaatacaccctttgacatccacacaaaaatctgacacgtaatcacgtggaccccgcaaaagcacacttt 27864802  T
Q  300 ctcttt 305  Q
    ||||||    
T  27864803 ctcttt 27864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 40614003 - 40613895
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||| |||||||||||||| |||||| |||||||||||||||  |||||||||||          |||| | ||| |||||||||||||||||||||||    
T  40614003 tgagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacacttt 40613904  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  40613903 ctcttttct 40613895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 38273242 - 38273135
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||| ||||||||||||||  |||||||||||||||||||||  |||||||||||          |||||| ||| |||||||||||| |||||||||||    
T  38273242 gagttatgatacatagacattcttagatggcaatacaccctttaacacccacacaaaaatctgacacgtagccacatggaccccgcactagcacactttc 38273143  T
Q  301 tcttttct 308  Q
    ||||||||    
T  38273142 tcttttct 38273135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 20700815 - 20700919
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||| |||||  |||||||||||||||  || || ||||||          ||||||||||||||||||||| ||||||||||||    
T  20700815 gagtaatgatacatagacatccttatgtggcaatacaccctttgactcctacacaaaaatctgacacgtagtcacgtggaccccgcataagcacactttc 20700914  T
Q  301 tcttt 305  Q
    |||||    
T  20700915 tcttt 20700919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 33436211 - 33436263
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccaca 263  Q
    ||||||||||||||||||| ||||||||||||||||||| ||  |||||||||    
T  33436211 gagtaatgatacatagacatccttagatggcaatacaccttttgacacccaca 33436263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 4060683 - 4060792
Alignment:
Q  209 ttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactt 298  Q
    |||||||||||||||||||||||||||| || ||||||||| ||  ||| |||||||          ||||||| ||||||| |||||| ||||||||||    
T  4060683 ttgagtaatgatacatagacacccttaggtgacaatacaccttttgacatccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactt 4060782  T
Q  299 tctcttttct 308  Q
    ||| ||||||    
T  4060783 tcttttttct 4060792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 38882913 - 38882804
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtgga---ccccgcacaagcacact 297  Q
    |||||||||||||||||||||||||| |||||||| ||||||  ||| |||||||          |||||||||||||||   |||||||||||| ||||    
T  38882913 gagtaatgatacatagacacccttaggtggcaata-accctttgacatccacacaaaaatctgacacgtagtcacgtggacccccccgcacaagcgcact 38882815  T
Q  298 ttctcttttct 308  Q
    |||||||||||    
T  38882814 ttctcttttct 38882804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 41575138 - 41575178
Alignment:
Q  212 agtaatgatacatagacacccttagatggcaatacaccctt 252  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  41575138 agtaatgatacatagacatccttagatggtaatacaccctt 41575178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 26891604 - 26891549
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| ||||||||||| ||||||||| ||||||||||||| |  ||||||||||||    
T  26891604 gagttatgatacatagccacccttaggtggcaatacacccctagacacccacacaa 26891549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 308
Target Start/End: Original strand, 42257269 - 42257300
Alignment:
Q  277 tggaccccgcacaagcacactttctcttttct 308  Q
    ||||||||||||||||||||||||||||||||    
T  42257269 tggaccccgcacaagcacactttctcttttct 42257300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 3439985 - 3440034
Alignment:
Q  217 tgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||||| ||||||||||||| ||||||||||| | || ||||||||||||    
T  3439985 tgatacgtagacacccttaggtggcaatacactcctggacacccacacaa 3440034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 43490120 - 43490176
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    ||||| |||||||||| |||||||||| || |||||||||| |  ||||||||||||    
T  43490120 tgagttatgatacataaacacccttaggtgacaatacaccccttgacacccacacaa 43490176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 308
Target Start/End: Complemental strand, 9474978 - 9474869
Alignment:
Q  209 ttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactt 298  Q
    |||||||||||||||||||||||||||| |||||||||||||||  |||||||||||          ||||||||||||||||||||||||| |||||||    
T  9474978 ttgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacactt 9474879  T
Q  299 tctcttttct 308  Q
    ||||||||||    
T  9474878 tctcttttct 9474869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 2581915 - 2582022
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||||||||          |||||||||||||||||||||||||||||||||||    
T  2581915 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 2582014  T
Q  301 tcttttct 308  Q
    | ||||||    
T  2582015 ttttttct 2582022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 47452421 - 47452313
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||| ||| |||||||||||  |||||||||||          ||||||||||||||| ||||||||||||||||||    
T  47452421 tgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacacttt 47452322  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  47452321 ctcttttct 47452313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 3000319 - 3000426
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||| |||||||||| |||||||||||||||  |||||||||||          |||||||||||||||||||| ||||||||||||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 3000418  T
Q  301 tcttttct 308  Q
    ||||||||    
T  3000419 tcttttct 3000426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 48716385 - 48716275
Alignment:
Q  208 tttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacact 297  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||  ||| ||||||||          |||||||||||||||||||||||||||||||    
T  48716385 tttgagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacact 48716286  T
Q  298 ttctcttttct 308  Q
    || ||||||||    
T  48716285 ttatcttttct 48716275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 27564836 - 27564728
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacacttt 299  Q
    |||||||||||||||||||| |||||| |||||||||||| ||  ||||||||||||          |||| ||||||||||||||||||||||||||||    
T  27564836 tgagtaatgatacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacacttt 27564737  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  27564736 ctcttttct 27564728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 38595154 - 38595261
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||| ||||| |||| |||||||||||||||  ||||||||||||          ||||||||||||||||||| ||||||||||||||    
T  38595154 gagtaatgatacataaacacctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 38595253  T
Q  301 tcttttct 308  Q
    ||||||||    
T  38595254 tcttttct 38595261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 38632421 - 38632314
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||| ||  ||| ||||||||          |||||||||||||||||||||||||||||||||     
T  38632421 gagtaatgatacatagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttt 38632322  T
Q  301 tcttttct 308  Q
    ||||||||    
T  38632321 tcttttct 38632314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 319
Target Start/End: Complemental strand, 44548480 - 44548358
Alignment:
Q  207 atttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacac 296  Q
    |||||| |||||||||||||||| | |||| |||||||||||| ||  | ||||||||||          ||||||||||||||||||||||||||||||    
T  44548480 atttgattaatgatacatagacatctttaggtggcaatacaccatttgatacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacac 44548381  T
Q  297 tttctcttttctatcttcatctc 319  Q
    |||||||||||| ||||| ||||    
T  44548380 tttctcttttctctcttcttctc 44548358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 8346488 - 8346381
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||| |||| |||| |||||||||||| ||  ||||||||||||          ||||||||||||||||| ||||||||||||||||    
T  8346488 gagtaatgatacatagtcacctttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccctgcacaagcacactttc 8346389  T
Q  301 tcttttct 308  Q
    ||||||||    
T  8346388 tcttttct 8346381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 32813247 - 32813354
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||| |||||||||||||| |||||| |||||||||||||||  |||||||||||          |||| ||||| ||||||||||||||||||||||||    
T  32813247 gagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagcacactttc 32813346  T
Q  301 tcttttct 308  Q
    ||||||||    
T  32813347 tcttttct 32813354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 41758805 - 41758912
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||||| ||| ||||||||||||||||  ||| |||||||          |||||||||| |||||||||||||| |||||||||    
T  41758805 gagtaatgatacatagacaccattaaatggcaatacaccctttgacaaccacacaaaaatctgacacgtagtcacatggaccccgcacaaacacactttc 41758904  T
Q  301 tcttttct 308  Q
    ||||||||    
T  41758905 tcttttct 41758912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 50630458 - 50630565
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||| |||||||| |||||||||| ||||    ||||||||||          ||||||||||||||||||||||||||||||||||    
T  50630458 gagtaatgatacatagatacccttaggtggcaatacatcctttgttacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 50630557  T
Q  301 tcttttct 308  Q
    ||||||||    
T  50630558 tcttttct 50630565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 51898783 - 51898683
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||| | |||| |||||||||||||||  |||||||||||          ||||||||||||||| |||||||||||||||||||    
T  51898783 gagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 51898684  T
Q  301 t 301  Q
    |    
T  51898683 t 51898683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 43197 - 43239
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttctcttttct 308  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  43197 acgtagtcacgtggactccgcacaagcacactttctcttttct 43239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 13414826 - 13414871
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttctcttttctatc 311  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  13414826 acgtagtcacgtggaccccacacaagcacattttctcttttctatc 13414871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 50591104 - 50591045
Alignment:
Q  207 atttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||||||| |||||||||| |||||||||| ||||||||||||| |  ||||||||||||    
T  50591104 atttgagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaa 50591045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 37649197 - 37649253
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||||||||||||||||||| | |||| ||||||||||| |||  ||||||||||||    
T  37649197 tgagtaatgatacatagacatctttaggtggcaatacactctttgacacccacacaa 37649253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 26440741 - 26440789
Alignment:
Q  218 gatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| ||||||| ||||||||| ||||||||||||  ||||||||||||    
T  26440741 gatagatagacatccttagatgacaatacaccctttaacacccacacaa 26440789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 15197332 - 15197440
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||          |||||||||||||||||||||||||||||||||    
T  15197332 tgagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 15197431  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  15197432 ctcttttct 15197440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 12831047 - 12831154
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| || ||||||||||||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 12831146  T
Q  301 tcttttct 308  Q
    ||||||||    
T  12831147 tcttttct 12831154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 504222 - 504114
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||          ||||||||||||||||||||||||||||||| ||    
T  504222 tgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacatt 504123  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  504122 ctcttttct 504114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 34012397 - 34012289
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||| ||| |||||||||||  |||||||||||          ||||||||||||||| ||||||||||||||||||    
T  34012397 tgagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacacttt 34012298  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  34012297 ctcttttct 34012289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 14547922 - 14548029
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||| ||||||||||||||||||| |||||||||||| ||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  14547922 gagtaaagatacatagacacccttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 14548021  T
Q  301 tcttttct 308  Q
    ||||||||    
T  14548022 tcttttct 14548029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 40424046 - 40423936
Alignment:
Q  208 tttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacact 297  Q
    |||||||||||||||||||| |||||||| |||||||||||||||  ||| ||||||||          |||||||| ||||||||||||||||||||||    
T  40424046 tttgagtaatgatacatagatacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacact 40423947  T
Q  298 ttctcttttct 308  Q
    |||||||||||    
T  40423946 ttctcttttct 40423936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 23122698 - 23122590
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||  |||||||||||| ||  ||||||||||||          ||||||||||||||||||||| |||||||||||    
T  23122698 tgagtaatgatacatagacacccttaagtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagcacacttt 23122599  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  23122598 ctcttttct 23122590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 1180040 - 1179933
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| ||| |||||||||||  |||||||||||          ||||||||| |||||  ||||||||||||||||||    
T  1180040 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagcacactttc 1179941  T
Q  301 tcttttct 308  Q
    ||||||||    
T  1179940 tcttttct 1179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 44507187 - 44507080
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| ||| ||||||| |||  |||||||||||          |||||||||||||||||||| ||||||| ||||||    
T  44507187 gagtaatgatacatagacacccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcatactttc 44507088  T
Q  301 tcttttct 308  Q
    ||||||||    
T  44507087 tcttttct 44507080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 20075035 - 20074938
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaacgtagt--cacgtggaccccgcacaagcacactttctcttt 305  Q
    |||||||||||||||||||| |||||| ||||||||||| |||  ||||||||| ||    ||  ||||||||||| |||||||||||||||||||||    
T  20075035 tgagtaatgatacatagacatccttaggtggcaatacactctttgacacccacataaaaatgtgacacgtggaccctgcacaagcacactttctcttt 20074938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 10284731 - 10284627
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||| ||||||||||||||||||||  || |||||||| |||  ||||||||||||          ||||||||||||||||||||||||||||||||||    
T  10284731 gagttatgatacatagacacccttaagtgacaatacactctttgacacccacacaaaaatttgacacgtagtcacgtggaccccgcacaagcacactttc 10284632  T
Q  301 tcttt 305  Q
    |||||    
T  10284631 tcttt 10284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 37038479 - 37038579
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||| | |||| |||||||||||||||  |||||||||||          ||||||||||||||| |||||||||||||||||||    
T  37038479 gagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 37038578  T
Q  301 t 301  Q
    |    
T  37038579 t 37038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 43414682 - 43414574
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||  |||||||||||          |||| ||||| |||| ||||||||||||||||||    
T  43414682 tgagttatgatacatagacatccttagatggcaacacaccctttgacacccacacaaaaatctaacacgtggtcacatggatcccgcacaagcacacttt 43414583  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  43414582 ctcttttct 43414574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 5957831 - 5957934
Alignment:
Q  212 agtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttct 301  Q
    ||||||||||||||||||  ||||| |||||||||||||||  |||||||||||          ||||||||||||||| ||||||||| ||||||||||    
T  5957831 agtaatgatacatagacattcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcacactttct 5957930  T
Q  302 cttt 305  Q
    ||||    
T  5957931 cttt 5957934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 8841467 - 8841428
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttctcttt 305  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8841467 acgtagtcacgtggaccccgcacaagcacactttctcttt 8841428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 15048289 - 15048177
Alignment:
Q  203 aattatttgagtaatgatacatagacacccttagatggcaatacacccttgtacacc-cacaca--------acgtagtcacgtggaccccgcacaagca 293  Q
    ||||| |||||| |||||||||||||| |||||| |||||||||||||||  ||||| |||| |        |||||| ||| |||||||||||||||||    
T  15048289 aattaattgagttatgatacatagacatccttaggtggcaatacaccctttgacaccacacaaaaatctgacacgtagccacatggaccccgcacaagca 15048190  T
Q  294 cactttctctttt 306  Q
    |||||||||||||    
T  15048189 cactttctctttt 15048177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 9122252 - 9122292
Alignment:
Q  268 gtagtcacgtggaccccgcacaagcacactttctcttttct 308  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  9122252 gtagtcacgtggatcccgcacaagcacactttctcttttct 9122292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 9122196 - 9122234
Alignment:
Q  212 agtaatgatacatagacacccttagatggcaatacaccc 250  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  9122196 agtaatgatacatagacacccttaggtggcaatacaccc 9122234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 4854963 - 4854922
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacaccctt 252  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  4854963 gagtaatgatacatagacatccttaggtggcaatacaccctt 4854922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 10621182 - 10621080
Alignment:
Q  216 atgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttctcttt 305  Q
    |||||||||||||| |||||| ||| |||||||||||  |||||||||||          |||||| ||| | || ||||||||||||||||||||||||    
T  10621182 atgatacatagacatccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagccacatcgatcccgcacaagcacactttctcttt 10621083  T
Q  306 tct 308  Q
    |||    
T  10621082 tct 10621080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 16383377 - 16383432
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| |||||||||| |||||||||| ||||||||||||| |  ||||||||||||    
T  16383377 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaa 16383432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 34307216 - 34307271
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| |||||||||| |||||||||| ||||||||||||| |  ||||||||||||    
T  34307216 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaa 34307271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 30479574 - 30479533
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacaccctt 252  Q
    |||| |||||||||| |||||||||| |||||||||||||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacaccctt 30479533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 24307893 - 24307838
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaataca-cccttgtacacccacacaa 266  Q
    |||| |||||||||| |||||||||| |||||||||| |||||| ||||||||||||    
T  24307893 gagttatgatacataaacacccttaggtggcaatacatcccttg-acacccacacaa 24307838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 25838197 - 25838296
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaac--gtagtcacgtggaccccgcacaagcacactttctcttttct 308  Q
    |||| |||||| ||||| | |||||| |||||||||||  ||  ||| |||||||||  || ||||| ||||| ||| ||||||||||||| ||||||||    
T  25838197 gagttatgataaatagatatccttaggtggcaatacactttttgacatccacacaacacgttgtcacatggactccgtacaagcacactttttcttttct 25838296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 308
Target Start/End: Complemental strand, 22880755 - 22880651
Alignment:
Q  214 taatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttctct 303  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  22880755 taatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctct 22880656  T
Q  304 tttct 308  Q
    |||||    
T  22880655 tttct 22880651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 32869677 - 32869785
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||          |||||||||||||||||||||||||||||||||    
T  32869677 tgagtaaagatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 32869776  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  32869777 ctcttttct 32869785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 17598553 - 17598661
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacacttt 299  Q
    ||||||||||||||||||||||||||| |||||||||| | ||  ||||||||||||          ||| |||||||||||||||||||||||||||||    
T  17598553 tgagtaatgatacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcacacttt 17598652  T
Q  300 ctcttttct 308  Q
    |||||||||    
T  17598653 ctcttttct 17598661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 6209565 - 6209458
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||||||||||||||||||||||||| |||||||||||  ||  |||| |||||||          |||||||||||||||||||||| |||||||||||    
T  6209565 gagtaatgatacatagacacccttaggtggcaatacactatttgacactcacacaaaaatctgtcacgtagtcacgtggaccccgcactagcacactttc 6209466  T
Q  301 tcttttct 308  Q
    ||||||||    
T  6209465 tcttttct 6209458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 29857827 - 29857934
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||||| ||||||||||||||||| ||  |||||||||||          ||||||| ||||||| |||||| ||||||||||||    
T  29857827 gagtaatgatacatagacacctttagatggcaatacaccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttc 29857926  T
Q  301 tcttttct 308  Q
    ||||||||    
T  29857927 tcttttct 29857934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 11427616 - 11427725
Alignment:
Q  211 gagtaatgatacatagacaccct--tagatggcaatacacccttgtacacccacacaa----------cgtagtcacgtggaccccgcacaagcacactt 298  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||  ||||||||||||          |||||||||||||| |||||||||||||||||    
T  11427616 gagtaatgatacatagacaccctcttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactt 11427715  T
Q  299 tctcttttct 308  Q
    ||||||||||    
T  11427716 tctcttttct 11427725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 31109503 - 31109393
Alignment:
Q  208 tttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacact 297  Q
    |||||||||||||  |||||||||||||| |||||||||||||||  ||| |||||||          |||||||||||| ||||||||| ||| |||||    
T  31109503 tttgagtaatgattaatagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcacgtagaccccgcaaaagtacact 31109404  T
Q  298 ttctcttttct 308  Q
    |||||||||||    
T  31109403 ttctcttttct 31109393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 31976248 - 31976355
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    |||| |||||||||||||| |||||| |||||||| ||||||  |||||||||||          |||| ||||| || |||||||||||||||||||||    
T  31976248 gagttatgatacatagacatccttaggtggcaatataccctttaacacccacacaaaaatctgacacgtggtcacatgaaccccgcacaagcacactttc 31976347  T
Q  301 tcttttct 308  Q
    ||||||||    
T  31976348 tcttttct 31976355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 15508127 - 15508069
Alignment:
Q  208 tttgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    ||||||| |||||||||| |||||||||| ||||||||||||| |  ||||||||||||    
T  15508127 tttgagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaa 15508069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 23128162 - 23128120
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttctcttttct 308  Q
    ||||||||||||||| ||| |||||||||||||||||||||||    
T  23128162 acgtagtcacgtggatcccacacaagcacactttctcttttct 23128120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 31110859 - 31110754
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca--------acgtagtcacgtggaccccgcacaagcacactttctc 302  Q
    |||| |||||||||||||| |||||| |||||||||||||||  |||| |||| |        |||||  ||| ||||||| ||||||||||||||||||    
T  31110859 gagttatgatacatagacatccttaggtggcaatacaccctttgacactcacaaaaatctgacacgtaaccacatggaccctgcacaagcacactttctc 31110760  T
Q  303 ttttct 308  Q
    ||||||    
T  31110759 ttttct 31110754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 15990142 - 15990087
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| |||||||||| |||||||||| ||||||||||||| |  ||||||||||||    
T  15990142 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaa 15990087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 30341460 - 30341405
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacacaa 266  Q
    |||| |||||||||| |||||||||| ||||||||||||| |  ||||||||||||    
T  30341460 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaa 30341405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 31953131 - 31953078
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccaca 263  Q
    |||||||||||| ||||||| |||||| ||||||||||||| |  |||||||||    
T  31953131 tgagtaatgatagatagacatccttaggtggcaatacaccccttgacacccaca 31953078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 4029 - 4136
Alignment:
Q  211 gagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacactttc 300  Q
    ||||||||||||||||||||| ||||||||||||||||| ||  |||||||||||          ||||||| ||||||| |||||| ||||||||||||    
T  4029 gagtaatgatacatagacacctttagatggcaatacaccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttc 4128  T
Q  301 tcttttct 308  Q
    ||||||||    
T  4129 tcttttct 4136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 1030 - 925
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    |||||||||||||||||||| | |||| |||||||||||||||  ||| |||||||          ||||||||||||| | ||||||||||||||||||    
T  1030 tgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacacttt 931  T
Q  300 ctcttt 305  Q
    ||||||    
T  930 ctcttt 925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 1030 - 925
Alignment:
Q  210 tgagtaatgatacatagacacccttagatggcaatacacccttgtacacccacaca----------acgtagtcacgtggaccccgcacaagcacacttt 299  Q
    |||||||||||||||||||| | |||| |||||||||||||||  ||| |||||||          ||||||||||||| | ||||||||||||||||||    
T  1030 tgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacacttt 931  T
Q  300 ctcttt 305  Q
    ||||||    
T  930 ctcttt 925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 10144 - 10102
Alignment:
Q  266 acgtagtcacgtggaccccgcacaagcacactttctcttttct 308  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  10144 acgtagtcacgtggaccgcgtacaagcacactttctcttttct 10102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1175 times since January 2019
Visitors: 4407