View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0681_low_15 (Length: 311)
Name: NF0681_low_15
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0681_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 29453145 - 29453361
Alignment:
| Q |
1 |
cgctatttcaacttttggcagaaatctttgcttgcttgggatgttctttcatgtttttctatttttcggattcaaagttgccttggaatgtttgtccaga |
100 |
Q |
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| T |
29453145 |
cgctatttcaacttttggcagaaatctttgcttgcttgggatgttctttcatgtttttctatttttcggattcaaagttgccttggaatgtttgtccaga |
29453244 |
T |
|
| Q |
101 |
---gacttatataatttcaattaagaaagtaagcattaaagaactggaattaaaggtataaagaattagtgacaaattaaattgatgattagattggaga |
197 |
Q |
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| T |
29453245 |
tcagacttatataatttcaattaagaaagtaagcattaaagaactggaactaaaggtataaaggattagtgacaaattaaattgatgattagattggaga |
29453344 |
T |
|
| Q |
198 |
gagcataatcatataat |
214 |
Q |
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||||||||||||||||| |
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| T |
29453345 |
gagcataatcatataat |
29453361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 50916394 - 50916296
Alignment:
| Q |
10 |
aacttttggcagaaatctttgcttgcttgggatgttctttcatgtttttctatttttcggattcaaagttgccttggaatgtttgtccagagacttata |
108 |
Q |
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| T |
50916394 |
aacttttggcaggaatctttgcttgtgtgggatgttctttcatgtttttctattttttggattcaaagttgccttggaatgtttgtccagagacttata |
50916296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 29264881 - 29264968
Alignment:
| Q |
108 |
ataatttcaattaagaaagtaagcattaaagaactggaattaaaggt----ataaagaattagtgacaaattaaattgatgattagat |
191 |
Q |
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|||||||||||||||||| ||||||| |||||| |||||||| | | ||||||||| ||||||| || |||||||||||||||| |
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| T |
29264881 |
ataatttcaattaagaaaataagcatcaaagaaatggaattagcgatttaaataaagaatcagtgacagatgaaattgatgattagat |
29264968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 35264116 - 35264046
Alignment:
| Q |
142 |
tggaattaaaggtataaagaat----tagtgacaaattaaattgatgattagattggagagagcataatcata |
210 |
Q |
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| T |
35264116 |
tggaattaaaggtataaacaatcgattagtgacagattaaattgatgattagat--cagagagcataatcata |
35264046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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