View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0681_low_19 (Length: 298)
Name: NF0681_low_19
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0681_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 29235309 - 29235229
Alignment:
| Q |
22 |
catcatcattgattggaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
102 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29235309 |
catcttcattgattggaatgctgcaaccatcttcaataatataccatagttcttcataaagatctatgacatgactataca |
29235229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 29348608 - 29348528
Alignment:
| Q |
22 |
catcatcattgattggaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
102 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29348608 |
catcttcattgattggaatgctgcaaccatcttcaataatataccatagttcttcataaagatctatgacatgactataca |
29348528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 16800932 - 16800867
Alignment:
| Q |
37 |
gaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
102 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
16800932 |
gaatgctaaaaccatcttcgattatatctcatagttcttcatcaagaactatatcatgactataca |
16800867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 18085561 - 18085487
Alignment:
| Q |
28 |
cattgattggaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
102 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| ||| | ||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
18085561 |
cattgactggaatgctacaaccatattcaattataccccatagttcttcatcaagagttatgacatgactataca |
18085487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 696 times since January 2019
Visitors: 4390