View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0681_low_20 (Length: 271)
Name: NF0681_low_20
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0681_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36312981 - 36312739
Alignment:
| Q |
1 |
tgttcatggtcaacctgataacatttatgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgct |
100 |
Q |
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| T |
36312981 |
tgttcatggtcaacctgataacatttatgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgct |
36312882 |
T |
|
| Q |
101 |
actgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312881 |
actgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcac |
36312782 |
T |
|
| Q |
201 |
ctgaaggtttgttggagaaagtaactgctgatgatgttaacat |
243 |
Q |
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| T |
36312781 |
ctgaaggtttgttggagaaagtaactgctgatgatgttaacat |
36312739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 36290498 - 36290239
Alignment:
| Q |
1 |
tgttcatggtcaacctgataacatttatgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgct |
100 |
Q |
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||||||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||| || |||||| |||||| ||||||||| |
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| T |
36290498 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctcgaatgtcctttctgct |
36290399 |
T |
|
| Q |
101 |
actgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcac |
200 |
Q |
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| T |
36290398 |
actgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctc |
36290299 |
T |
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| Q |
201 |
ctgaaggtttgttggagaaagtaactgctgatgatgttaacatcggtctaggttatgtct |
260 |
Q |
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| T |
36290298 |
ctgaaggattgttggagaaggttaccgctgatgatgttaacatcggtctaggttatgtct |
36290239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 33579845 - 33579675
Alignment:
| Q |
68 |
gaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgagga |
167 |
Q |
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||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||| | ||||||||| | | ||||||||||||||||||||| |
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| T |
33579845 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactggtttgaggt |
33579746 |
T |
|
| Q |
168 |
cattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgtt |
238 |
Q |
| |
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|| | |||| | |||||||| ||||||| | |||||| ||||| |||||||| ||||||||||||||| |
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| T |
33579745 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
33579675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 15997153 - 15997323
Alignment:
| Q |
68 |
gaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgagga |
167 |
Q |
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||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||| | ||||||||| | | ||||||||||||| ||||||| |
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| T |
15997153 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactgatttgaggt |
15997252 |
T |
|
| Q |
168 |
cattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgtt |
238 |
Q |
| |
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|| | |||| | |||||||| ||||||| | |||||| ||||| |||||||| ||||||||||||||| |
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| T |
15997253 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
15997323 |
T |
|
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