View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0681_low_21 (Length: 268)
Name: NF0681_low_21
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0681_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 11975151 - 11975009
Alignment:
| Q |
28 |
aaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11975151 |
aaacaaaggaattgggtttgaaatagttaagcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgctttg |
11975052 |
T |
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| Q |
128 |
gaaacactcaaagcctatggtttatctgattttgttgcctttc |
170 |
Q |
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| T |
11975051 |
caaacactcaaagcctatggtttatctgattttgttgcctttc |
11975009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 12014642 - 12014506
Alignment:
| Q |
28 |
aaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttg |
127 |
Q |
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||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12014642 |
aaacaaagggattggatttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaaagaggtcttcatgctttg |
12014543 |
T |
|
| Q |
128 |
gaaacactcaaagcctatggtttatctgattttgttg |
164 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
12014542 |
gaaacactcaaagcctctggtttatctgattttgttg |
12014506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 11984583 - 11984442
Alignment:
| Q |
28 |
aaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttg |
127 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11984583 |
aaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagttgtgcttacagcaagagatgagaaaagaggtcttcatgctttg |
11984484 |
T |
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| Q |
128 |
gaaacactcaaagcctatggtttatctgattttgttgccttt |
169 |
Q |
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| T |
11984483 |
gaaacactcaaagcttctggtctttcagattttgttgtcttt |
11984442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 12004974 - 12004839
Alignment:
| Q |
29 |
aacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttgg |
128 |
Q |
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|||||||||||||| || || ||||| | |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12004974 |
aacaaaggaattggattagagatagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgctttgg |
12004875 |
T |
|
| Q |
129 |
aaacactcaaagcctatggtttatctgattttgttg |
164 |
Q |
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| T |
12004874 |
aaacactcaaagcatctggtttatctgattttgttg |
12004839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 11980226 - 11980090
Alignment:
| Q |
28 |
aaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttg |
127 |
Q |
| |
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||||||||||||||| || || ||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11980226 |
aaacaaaggaattggattagagatagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgcattg |
11980127 |
T |
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| Q |
128 |
gaaacactcaaagcctatggtttatctgattttgttg |
164 |
Q |
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|||||||| ||||| | |||||||||||||||||||| |
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| T |
11980126 |
gaaacacttaaagcatctggtttatctgattttgttg |
11980090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 12010067 - 12009931
Alignment:
| Q |
28 |
aaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttg |
127 |
Q |
| |
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|||||||||||||||||| || |||||||| || |||||||| ||| |||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
12010067 |
aaacaaaggaattgggttagagatagttaaacagttagcttcagctagaatcaaagtggtgctcacatcaagagatgagaaaagaggtcttcatgctttg |
12009968 |
T |
|
| Q |
128 |
gaaacactcaaagcctatggtttatctgattttgttg |
164 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||| |
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| T |
12009967 |
gaaacactcaaagcatctggtttatctgattttgttg |
12009931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 11992090 - 11991954
Alignment:
| Q |
28 |
aaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttg |
127 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| |||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11992090 |
aaacaaaggaattgggttagagatagtaaagcagttagcttcagctgtaatcaaagtggtgcttacatcaagagatgagaaaagaggtcttcatgctttg |
11991991 |
T |
|
| Q |
128 |
gaaacactcaaagcctatggtttatctgattttgttg |
164 |
Q |
| |
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|||||||| ||||| | |||| | ||||||||||||| |
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| T |
11991990 |
gaaacacttaaagcttctggtctttctgattttgttg |
11991954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 11999757 - 11999622
Alignment:
| Q |
28 |
aaacaaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttg |
127 |
Q |
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|
||||||||||||||| ||||| ||||| | ||| |||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11999757 |
aaacaaaggaattggatttgagatagtaaggcagttagcttcagatggaatcaaagttgtgctgacagcaagagatgagaaaagaggtcttcatgctttg |
11999658 |
T |
|
| Q |
128 |
gaaacactcaaagcctatggtttatctgattttgtt |
163 |
Q |
| |
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|||||||||||||| | |||| | || ||||||||| |
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|
| T |
11999657 |
gaaacactcaaagcttctggtctttcagattttgtt |
11999622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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