View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0681_low_27 (Length: 245)

Name: NF0681_low_27
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0681_low_27
NF0681_low_27
[»] chr5 (12 HSPs)
chr5 (50-244)||(6866810-6867004)
chr5 (50-222)||(38357935-38358107)
chr5 (50-224)||(35122206-35122380)
chr5 (50-176)||(30509547-30509673)
chr5 (50-176)||(30549887-30550013)
chr5 (76-185)||(19512991-19513100)
chr5 (91-170)||(6049741-6049820)
chr5 (91-177)||(7000328-7000407)
chr5 (88-167)||(22094788-22094867)
chr5 (91-167)||(20208261-20208336)
chr5 (50-177)||(31864309-31864429)
chr5 (133-169)||(26261903-26261939)
[»] chr2 (17 HSPs)
chr2 (50-244)||(35488283-35488477)
chr2 (50-224)||(28400050-28400224)
chr2 (54-244)||(16213631-16213814)
chr2 (141-244)||(8065817-8065920)
chr2 (88-194)||(15018173-15018279)
chr2 (91-170)||(1380602-1380681)
chr2 (50-193)||(9668506-9668649)
chr2 (88-159)||(11028401-11028472)
chr2 (50-182)||(36804635-36804759)
chr2 (50-104)||(8065761-8065815)
chr2 (89-177)||(25380933-25381014)
chr2 (92-167)||(22724981-22725056)
chr2 (117-161)||(43310788-43310832)
chr2 (88-151)||(26894150-26894213)
chr2 (88-151)||(26899589-26899652)
chr2 (120-188)||(11234049-11234117)
chr2 (117-161)||(26146744-26146788)
[»] chr6 (20 HSPs)
chr6 (51-244)||(23065547-23065740)
chr6 (50-187)||(33805283-33805420)
chr6 (50-244)||(21549294-21549488)
chr6 (150-244)||(9565813-9565907)
chr6 (50-131)||(4478550-4478631)
chr6 (91-170)||(17078731-17078810)
chr6 (88-177)||(19256153-19256242)
chr6 (80-170)||(18050979-18051069)
chr6 (91-212)||(11060403-11060524)
chr6 (50-193)||(13086036-13086179)
chr6 (88-177)||(503070-503159)
chr6 (50-179)||(11469080-11469208)
chr6 (88-177)||(33640431-33640519)
chr6 (117-165)||(10362658-10362706)
chr6 (90-177)||(8264736-8264823)
chr6 (88-194)||(5085564-5085670)
chr6 (91-170)||(649614-649686)
chr6 (117-169)||(32186204-32186256)
chr6 (91-130)||(17873367-17873406)
chr6 (88-151)||(23347005-23347068)
[»] chr3 (19 HSPs)
chr3 (50-244)||(36709356-36709550)
chr3 (50-224)||(45684642-45684816)
chr3 (50-244)||(15481258-15481451)
chr3 (50-244)||(42674939-42675132)
chr3 (50-182)||(24926188-24926320)
chr3 (50-185)||(21740023-21740158)
chr3 (66-136)||(18366098-18366168)
chr3 (94-185)||(14864009-14864100)
chr3 (133-243)||(18368538-18368648)
chr3 (91-212)||(47537746-47537867)
chr3 (88-167)||(50544747-50544825)
chr3 (117-185)||(54439681-54439748)
chr3 (79-170)||(48192319-48192409)
chr3 (117-161)||(52250691-52250735)
chr3 (88-151)||(6176016-6176079)
chr3 (121-167)||(8943869-8943914)
chr3 (94-127)||(23819127-23819160)
chr3 (117-177)||(8130464-8130524)
chr3 (79-127)||(43121203-43121251)
[»] chr7 (14 HSPs)
chr7 (50-224)||(18671636-18671810)
chr7 (50-220)||(18767878-18768048)
chr7 (54-244)||(34457662-34457852)
chr7 (50-194)||(36227650-36227794)
chr7 (50-185)||(5327267-5327403)
chr7 (50-224)||(17856202-17856369)
chr7 (50-131)||(41340092-41340173)
chr7 (88-168)||(33795895-33795975)
chr7 (50-193)||(13553684-13553827)
chr7 (88-177)||(45993089-45993177)
chr7 (88-127)||(4077831-4077870)
chr7 (76-151)||(13440592-13440667)
chr7 (79-170)||(34232219-34232303)
chr7 (117-185)||(17056034-17056102)
[»] chr8 (13 HSPs)
chr8 (50-224)||(44082512-44082686)
chr8 (76-185)||(6901414-6901523)
chr8 (50-139)||(23942638-23942727)
chr8 (50-185)||(12134833-12134967)
chr8 (91-212)||(17659309-17659430)
chr8 (76-194)||(11393874-11393992)
chr8 (88-167)||(36157677-36157755)
chr8 (88-177)||(4987603-4987692)
chr8 (120-185)||(24794262-24794327)
chr8 (169-229)||(23942577-23942637)
chr8 (120-167)||(28992799-28992846)
chr8 (117-177)||(4310409-4310469)
chr8 (91-127)||(45255376-45255412)
[»] chr1 (14 HSPs)
chr1 (50-244)||(34853148-34853335)
chr1 (88-167)||(25504532-25504611)
chr1 (50-193)||(39430774-39430917)
chr1 (76-167)||(28097492-28097582)
chr1 (87-193)||(49264501-49264607)
chr1 (91-167)||(26721156-26721232)
chr1 (91-170)||(30110466-30110544)
chr1 (91-131)||(10710738-10710778)
chr1 (76-151)||(48072957-48073032)
chr1 (88-126)||(7396260-7396298)
chr1 (117-159)||(21405368-21405410)
chr1 (120-193)||(20796165-20796238)
chr1 (117-185)||(22191349-22191417)
chr1 (117-161)||(45270770-45270814)
[»] chr4 (18 HSPs)
chr4 (50-244)||(26694374-26694568)
chr4 (50-194)||(53810337-53810481)
chr4 (88-194)||(19114932-19115038)
chr4 (91-170)||(10562874-10562953)
chr4 (65-183)||(4524142-4524259)
chr4 (93-170)||(20396102-20396179)
chr4 (79-144)||(34975081-34975146)
chr4 (91-170)||(42778758-42778837)
chr4 (88-193)||(8935571-8935676)
chr4 (88-167)||(13158324-13158402)
chr4 (120-185)||(42953064-42953129)
chr4 (88-167)||(29553278-29553357)
chr4 (88-193)||(23657794-23657899)
chr4 (79-127)||(53486472-53486520)
chr4 (76-151)||(23873002-23873077)
chr4 (116-167)||(49925833-49925884)
chr4 (76-151)||(55299151-55299226)
chr4 (117-177)||(40688579-40688639)
[»] scaffold0308 (1 HSPs)
scaffold0308 (53-187)||(17648-17782)
[»] scaffold0912 (1 HSPs)
scaffold0912 (91-170)||(2414-2493)
[»] scaffold0179 (2 HSPs)
scaffold0179 (91-167)||(8055-8131)
scaffold0179 (91-167)||(12989-13065)
[»] scaffold0112 (1 HSPs)
scaffold0112 (56-175)||(15157-15275)
[»] scaffold0007 (1 HSPs)
scaffold0007 (93-170)||(182635-182712)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 6867004 - 6866810
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6867004 ggaggatgttagtttatagagaagagttgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccagagtggttc 6866905  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||    
T  6866904 ttcgtggtggcgggaggtagataggattcgtgatggtgacggtgacataggtggagggtggttcggtgatagtgttaggcggatggtgggtgatg 6866810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 38358107 - 38357935
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| |||||||||| |||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  38358107 ggaggatgttagttgatagagaagagttgtggtatcagattttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttc 38358008  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagt 222  Q
     | ||||||||||||||||||||||||||||||||| |  ||||||| ||| |||||||||||||||||||||    
T  38358007 cttgtggtggcgggaggtaggtaggattcgtgatggcgttggtgacacaggtggagggtggttcggtgatagt 38357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 35122206 - 35122380
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| ||||    
T  35122206 ggaggatgttagtggatagagaaggattgtggtatcaggttttagtcgcccgttatggcgaaataggtggaaggttggaggtggggggccagagttgttc 35122305  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgt 224  Q
    ||| ||||||||||||||||| |||||| |||| ||||  |||||  |||| || || ||||| || ||||||||    
T  35122306 ttcttggtggcgggaggtagggaggatttgtgagggtgttggtgatgtagggggtggttggtttggggatagtgt 35122380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 30509547 - 30509673
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    ||||| |||||||  ||||||| |  ||||||||||| ||||||||||||||||||| |||  | |||||||| |||||||||||||||| |||| ||||    
T  30509547 ggaggttgttagtagatagagatggcttgtggtatcaggttttagtcgcccgttatggcgagatcggtgggagattggaggtggggggccggagttgttc 30509646  T
Q  150 ttcgtggtggcgggaggtaggtaggat 176  Q
    ||| ||||||||||||||||| |||||    
T  30509647 ttcttggtggcgggaggtagggaggat 30509673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 30549887 - 30550013
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    ||||| |||||||  ||||||| |  ||||||||||| ||||||||||||||||||| |||  | |||||||| |||||||||||||||| |||| ||||    
T  30549887 ggaggttgttagtagatagagatggcttgtggtatcaggttttagtcgcccgttatggcgagatcggtgggagattggaggtggggggccggagttgttc 30549986  T
Q  150 ttcgtggtggcgggaggtaggtaggat 176  Q
    ||| ||||||||||||||||| |||||    
T  30549987 ttcttggtggcgggaggtagggaggat 30550013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 19512991 - 19513100
Alignment:
Q  76 ttgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtagga 175  Q
    |||||||||  |||| | ||||||||||||| ||| || ||||||||||||||||||||||||| |||| ||||||| |||||| |||||||||| ||||    
T  19512991 ttgtggtatagtgttcttgtcgcccgttatggcgaggttggtgggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggagga 19513090  T
Q  176 ttcgtgatgg 185  Q
    |||| |||||    
T  19513091 ttcgagatgg 19513100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 6049820 - 6049741
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    ||||||||||||||||  |||||||||||||||||||||||  ||||||||||| ||||||| |||||| ||||||||||    
T  6049820 ttagtcgcccgttatggtgaagtaggtgggaggttggaggttaggggccagagttgttcttcctggtggagggaggtagg 6049741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 7000328 - 7000407
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    |||||||||||||||| ||||||||||||||||||       |||||||||||| ||||||| |||||| |||||||||| ||||||    
T  7000328 ttagtcgcccgttatggcgaagtaggtgggaggtt-------gggggccagagttgttcttcttggtggagggaggtagggaggatt 7000407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 22094788 - 22094867
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||||||| ||||||| ||| ||  |||||||||||||||  |||||||  ||| ||||||||||||||||||||||    
T  22094788 gttttagtcgctcgttatggcgaggtttgtgggaggttggaggatgggggccgaagttgttcttcgtggtggcgggaggt 22094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 20208261 - 20208336
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    |||||||||||| ||| |||||||||||||||||||||||| ||||||| |||| |||| |  |||||| |||||||    
T  20208261 ttagtcgcccgt-atggcgaagtaggtgggaggttggaggttgggggccggagttgttcgttttggtggagggaggt 20208336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 31864429 - 31864309
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  |||||| ||  || ||||||  ||||||| || || | |||| |||| ||||||||||||||| |||       |||||||||||    
T  31864429 ggaggatgttagtggatagaggaggcttatggtatagtgttttaatcaccagctatggcgaaataggtgggaggttggcggt-------cagagtggttc 31864337  T
Q  150 ttcgtggtggcgggaggtaggtaggatt 177  Q
    ||| |||||||||||||| || ||||||    
T  31864336 ttcttggtggcgggaggtggggaggatt 31864309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 26261903 - 26261939
Alignment:
Q  133 gggggccagagtggttcttcgtggtggcgggaggtag 169  Q
    |||||||||||||| |||||||||||| |||||||||    
T  26261903 gggggccagagtgggtcttcgtggtggagggaggtag 26261939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 35488477 - 35488283
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    ||||| |||||||| |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  35488477 ggaggttgttagttgatagagaagggttgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccgaagtggttc 35488378  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||| ||||||||||| ||||| | |||||||||||    
T  35488377 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacagtgacgtaggtggtgggtggtttggtgatagtgttaggcggagggtgggtgatg 35488283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 28400050 - 28400224
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  |||||||||   |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  28400050 ggaggatgttagtcgatagagaagggatgtggtatcaggttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttc 28400149  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgt 224  Q
    || ||||||||||||||||||||||||||||||||| | |||||||| ||| ||||| |||||||||||||||||    
T  28400150 tttgtggtggcgggaggtaggtaggattcgtgatggcgtcggtgacacaggtggaggttggttcggtgatagtgt 28400224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 16213814 - 16213631
Alignment:
Q  54 gatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcg 153  Q
    |||||||||| | |||||||  | ||||||||||||||||||||||||||||| |||||||||||||||||       |||||||| ||||| ||||| |    
T  16213814 gatgttagttgacagagaagggtcgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggt-------ggggggccggagtgtttctttg 16213722  T
Q  154 tggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || || | |||||||||||    
T  16213721 tggtggtgggaggtaggtaggattcgtgatggtgtcggtgacataggtggagggtggttcggtgatagtgttagacggagggtgggtgatg 16213631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 8065817 - 8065920
Alignment:
Q  141 gagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggt 240  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| || |||||||| ||||||||||| ||||| | |||||||    
T  8065817 gagtggttcttcgtggtggcgggaggtaggtagaattcttgatggtgacggtgacgtaggtggtgggtggtttggtgatagtgttaggcggagggtgggt 8065916  T
Q  241 gatg 244  Q
    ||||    
T  8065917 gatg 8065920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 15018279 - 15018173
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtg 187  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||| |||||||  ||| ||||||| ||||||||||||||||| |||||| | ||||| |    
T  15018279 gttttagtcgctcgttatggcgaagtatgtgggaggttggaggttgggggccgaagttgttcttcttggtggcgggaggtagggaggattagggatgggg 15018180  T
Q  188 acggtga 194  Q
    |||||||    
T  15018179 acggtga 15018173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 1380681 - 1380602
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||| |||| ||||||| |||||| ||||| ||||    
T  1380681 ttagtcgcccgttatggcgaagtaggcgggaggttggaggttgggggccggagttgttcttcttggtggagggagatagg 1380602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 9668506 - 9668649
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||| ||  |||||| ||  |||||||||  |||| ||||||||||||||| ||| || || |||||||||||||| ||||||| |||| ||||    
T  9668506 ggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttc 9668605  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtg 193  Q
    ||  |||||| ||||||| || |||||| | |||||||| ||||    
T  9668606 ttattggtggagggaggtggggaggattagagatggtgatggtg 9668649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 11028472 - 11028401
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtgg 159  Q
    ||||||||||||||||| | |||||||||||| ||||||||||  |||||||||||| ||||||| ||||||    
T  11028472 gttttagtcgcccgttacggcgaagtaggtggaaggttggaggatgggggccagagttgttcttcttggtgg 11028401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 36804759 - 36804635
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  | |||||||  |||||||||| |||||||||||||||||||| ||| | | ||||||||||        |||| | |||||||||    
T  36804759 ggaggatgttagtagagagagaaggtttgtggtatcgtgttttagtcgcccgttatggcgaggcatgtgggaggtt--------gggggcggagtggttc 36804668  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtga 182  Q
    ||| ||||||| ||||||||| |||||||||||    
T  36804667 ttcttggtggcaggaggtagggaggattcgtga 36804635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 8065761 - 8065815
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgtta 104  Q
    ||||| |||||||| |||||||||  |||||||||||||||||||||||||||||    
T  8065761 ggaggttgttagttgatagagaagggttgtggtatcatgttttagtcgcccgtta 8065815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 25380933 - 25381014
Alignment:
Q  89 ttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    |||||||||||||||||| ||| ||||||||||||||||       |||||||||| |||||||||||||| ||||||| || ||||||    
T  25380933 ttttagtcgcccgttatggcgaggtaggtgggaggttgg-------gggccagagttgttcttcgtggtggagggaggtggggaggatt 25381014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 22724981 - 22725056
Alignment:
Q  92 tagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    |||||||||  |||| ||| ||||| |||||||||||||  ||||||| |||| ||||||||||||||||| ||||    
T  22724981 tagtcgcccactatggcgaggtaggcgggaggttggaggatgggggccggagttgttcttcgtggtggcggaaggt 22725056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 43310832 - 43310788
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcg 161  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||    
T  43310832 tgggaggttggaggttgggggccggagtggttcttcttggtggcg 43310788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 26894150 - 26894213
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttctt 151  Q
    |||||||||||| | |||| |||| ||||||| ||||||||||| ||||||| ||||| |||||    
T  26894150 gttttagtcgccaggtatggcgaaataggtggcaggttggaggttgggggccggagtgtttctt 26894213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 26899589 - 26899652
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttctt 151  Q
    |||||||||||| | |||| |||| ||||||| ||||||||||| ||||||| ||||| |||||    
T  26899589 gttttagtcgccaggtatggcgaaataggtggcaggttggaggttgggggccggagtgtttctt 26899652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 11234049 - 11234117
Alignment:
Q  120 gaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtga 188  Q
    |||||||||||| ||||||| |||| ||||||  |||||  |||||||||| |||||| | ||||||||    
T  11234049 gaggttggaggttgggggccggagttgttcttattggtgaagggaggtagggaggattagagatggtga 11234117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 26146788 - 26146744
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcg 161  Q
    ||||||||||||||| ||||||| |||||||| ||| ||||||||    
T  26146788 tgggaggttggaggttgggggccggagtggttattcttggtggcg 26146744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 51 - 244
Target Start/End: Original strand, 23065547 - 23065740
Alignment:
Q  51 gaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttct 150  Q
    |||| |||||||| |||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  23065547 gaggttgttagttgatagagaaggtttgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggagtggttct 23065646  T
Q  151 tcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    |||||||||| ||||||||||||||||||||||||||| |||||| |||| || |||||||| ||||||||||| ||||| | |||||||||||    
T  23065647 tcgtggtggcaggaggtaggtaggattcgtgatggtgatggtgacgtaggtggtgggtggtttggtgatagtgttaggcggagggtgggtgatg 23065740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 33805420 - 33805283
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  33805420 ggaggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgctatggcgaaataggtgggaggttggaggtggggggccggagttgttc 33805321  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtg 187  Q
    ||| ||||||||||||||||| |||||| |||| ||||    
T  33805320 ttcttggtggcgggaggtagggaggatttgtgagggtg 33805283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 21549488 - 21549294
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| ||||| |||  ||||| |||||  |||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||| |||    
T  21549488 ggaggatgttagttgatagataagggttgtgatatcagattttagtcgcccgttatggcgaagtagatgggaggttggaggtggggggtcggagtgtttc 21549389  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    || ||| |||||||||||||| ||||| | ||||||||  |||||| |||| || |||||||||||||||||||| ||  | | |||||||||||    
T  21549388 tttgtgctggcgggaggtaggcaggatacatgatggtgctggtgacttaggtggcgggtggttcggtgatagtgttagatggagggtgggtgatg 21549294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 9565907 - 9565813
Alignment:
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || || | |||||||||||    
T  9565907 ttcgtggtggcgggaggtaggtaggattcgtgatggtgatggtgacataggtggagggtggttcggtgatagtgttagacggagggtgggtgatg 9565813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 4478631 - 4478550
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggt 131  Q
    |||||||||||||  |||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4478631 ggaggatgttagtggatagggaagggttgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggt 4478550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 17078731 - 17078810
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||    
T  17078731 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagg 17078810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 19256242 - 19256153
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    ||||||||||||||||||| ||| ||  |||||||||||||||| |||||||||||| ||||||| |||||||||||||| || ||||||    
T  19256242 gttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttgggggccagagttgttcttcttggtggcgggaggtggggaggatt 19256153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 18050979 - 18051069
Alignment:
Q  80 ggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    ||||||| || |||||||||  ||||| |||||||||||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||    
T  18050979 ggtatcaagtcttagtcgccgattatggcgaagtaggtgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagg 18051069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 11060403 - 11060524
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtgacg 190  Q
    ||||| |||||||||| |||| ||||||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||  ||||| | || ||||  |    
T  11060403 ttagttgcccgttatggcgaattaggtgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagggacggtggag 11060502  T
Q  191 gtgacataggcggagggtggtt 212  Q
    ||||||| || ||||| |||||    
T  11060503 gtgacattggtggaggctggtt 11060524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 13086179 - 13086036
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||| ||  |||||| ||  |||||||||  |||| ||||||||||||||| ||| || || |||||||||||||| ||||||| |||| ||||    
T  13086179 ggaggatgttggtagatagagtaggtttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttc 13086080  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtg 193  Q
    ||  ||||||  ||||||||| |||||| | |||||||| ||||    
T  13086079 tttttggtggaaggaggtagggaggattagagatggtgatggtg 13086036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 503070 - 503159
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    ||||||||||||||||||| ||| ||  |||||||||||||||  ||||||| |||| ||||||| |||||||||||||| || ||||||    
T  503070 gttttagtcgcccgttatggcgaggtgtgtgggaggttggaggatgggggccggagttgttcttcttggtggcgggaggtggggaggatt 503159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 11469208 - 11469080
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||| ||  ||| |||||  |||||||||| ||| ||||||||||| ||||  || |||||||||||||||||||  ||||| | |||| ||||    
T  11469208 ggaggatgttggtagataaagaagggttgtggtatcgtgtgttagtcgcccgatatggtgacgtaggtgggaggttggaggaaggggg-cggagttgttc 11469110  T
Q  150 ttcgtggtggcgggaggtaggtaggattcg 179  Q
    ||| |||||| ||||||| || ||||||||    
T  11469109 ttcttggtggagggaggttgggaggattcg 11469080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 33640519 - 33640431
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    ||||||||||||||||||| ||| ||  ||||||||||||||||  |||||| |||| ||||||| |||||||||||||| || ||||||    
T  33640519 gttttagtcgcccgttatggcgaggtgtgtgggaggttggaggt-tggggccggagttgttcttcttggtggcgggaggtggggaggatt 33640431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 10362706 - 10362658
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcgggag 165  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  10362706 tgggaggttggaggtggggggccggagtggttcttcttggtggcgggag 10362658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 8264823 - 8264736
Alignment:
Q  90 tttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    |||||||||| |||||| ||| ||  |||||||||||||||  ||||||| |||| ||||||| |||||||||||||| || ||||||    
T  8264823 tttagtcgcctgttatggcgaggtgtgtgggaggttggaggatgggggccggagttgttcttcttggtggcgggaggtggggaggatt 8264736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 5085564 - 5085670
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtg 187  Q
    ||||||||| | ||||||| ||||||  |||||||||||||||  |||||||  ||| ||||||| |||||||||||||| || |||||| |  |||| |    
T  5085564 gttttagtcactcgttatggcgaagtctgtgggaggttggaggatgggggccgaagttgttcttcttggtggcgggaggtggggaggattaggaatgggg 5085663  T
Q  188 acggtga 194  Q
    |||||||    
T  5085664 acggtga 5085670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 649614 - 649686
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||||||||||| ||||||||||||||||||       ||||||| |||| ||||||| |||||| ||||||||||    
T  649614 ttagtcgcccgttatggcgaagtaggtgggaggtt-------gggggccggagttgttcttcttggtggagggaggtagg 649686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 32186256 - 32186204
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtag 169  Q
    ||||||||||||||| ||||||| ||||| |||||| |||||| |||||||||    
T  32186256 tgggaggttggaggttgggggccggagtgcttcttcttggtggagggaggtag 32186204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 17873367 - 17873406
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggagg 130  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  17873367 ttagtcgtccgttatggcgaagtaggtgggaggttggagg 17873406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 23347005 - 23347068
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttctt 151  Q
    |||||||||||| | |||| |||| ||||||| ||||||||||| ||||||| ||||| |||||    
T  23347005 gttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttctt 23347068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 36709550 - 36709356
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| | |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  36709550 ggaggatgttagttgacagagaagggttgtggtatcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttc 36709451  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    || ||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||| || || | |||||||||||    
T  36709450 tttgtggtggcgggaggtaggtaggatttgtgatggtgtcagtgacataggtggagggtggttcggtgatagtgttagacggagggtgggtgatg 36709356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 45684816 - 45684642
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  |||||||||   |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  45684816 ggaggatgttagtcgatagagaagggctgtggtatcaggttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttc 45684717  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgt 224  Q
    || ||||||||||||||||||||||||||||||||| | |||||||| ||| ||||| |||||||||||||||||    
T  45684716 tttgtggtggcgggaggtaggtaggattcgtgatggcgtcggtgacacaggtggaggttggttcggtgatagtgt 45684642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 15481258 - 15481451
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| | |||||||  ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| | | |||| |||    
T  15481258 ggaggatgttagttgacagagaagggttgtggtatcatgttctagtcgcccgttatggcaaagtaggtgggaggttggaggtgggggccga-agtgtttc 15481356  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
     | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| |  || | |||||||||||    
T  15481357 cttgtggtggcgggaggtaggtaggattcgtgatggtgtcggtgacataggtggagggtggttcgatgatagtgttatacggagggtgggtgatg 15481451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 42674939 - 42675132
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||  |||    
T  42674939 ggaggatgttagttgatagagaagggttgtggtatcaggttttagtcgcccgttatggcgaagtagatgggaggttggaggt-gggggccggagtatttc 42675037  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    || |||||||||||||||||| ||||| ||||||||||   ||||| |||| || |||||||||||||||||||| || || | |||||||||||    
T  42675038 tttgtggtggcgggaggtaggcaggatccgtgatggtgctagtgacttaggtggcgggtggttcggtgatagtgttagacggagggtgggtgatg 42675132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 24926188 - 24926320
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  |||||||||  |||||||||| |||||||||||||||||||||||| | | |||||||||||||||| ||  ||| |||||||||    
T  24926188 ggaggatgttagtggatagagaaggtttgtggtatcgtgttttagtcgcccgttatgacgaggcatgtgggaggttggaggttggtcgccggagtggttc 24926287  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtga 182  Q
    | | ||||||| ||||||||| |||||||||||    
T  24926288 tacttggtggccggaggtagggaggattcgtga 24926320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 21740023 - 21740158
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||| ||  |||||| ||  || ||||||  |||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||    
T  21740023 ggaggatgttggtagatagagtaggtttatggtattgtgttctagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggagttgttc 21740122  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatgg 185  Q
    ||| |||||| ||||||| || |||||||| |||||    
T  21740123 ttcttggtggagggaggtcgggaggattcgagatgg 21740158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 18366098 - 18366168
Alignment:
Q  66 tagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggg 136  Q
    ||||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18366098 tagagaagggttgtggtttcatgttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggg 18366168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 14864009 - 14864100
Alignment:
Q  94 gtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatgg 185  Q
    |||||| |||||| ||| || ||||||||||||||||||||||||| |||| ||||||| |||||| |||||||||| |||||||| |||||    
T  14864009 gtcgcctgttatggcgaggtgggtgggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatgg 14864100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 18368538 - 18368648
Alignment:
Q  133 gggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaa 232  Q
    |||| |||||||| ||||| ||||||| |||||||||||| ||||||||||||||| || |||||| | |||||||||||| |||||||| | || || |    
T  18368538 ggggcccagagtgtttctttgtggtggagggaggtaggtatgattcgtgatggtgatggagacatatgtggagggtggttcagtgatagtattagacgga 18368637  T
Q  233 cggtgggtgat 243  Q
     ||||||||||    
T  18368638 gggtgggtgat 18368648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 47537867 - 47537746
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtgacg 190  Q
    |||||||||||| ||| |||||||||||| |||||||||||  ||||||||||| ||||||| |||||| ||||||||||  ||||| | || ||||  |    
T  47537867 ttagtcgcccgtaatggcgaagtaggtggaaggttggaggttaggggccagagttgttcttcttggtggagggaggtagggcggattagggacggtggag 47537768  T
Q  191 gtgacataggcggagggtggtt 212  Q
    ||||||| || ||||| |||||    
T  47537767 gtgacattggtggaggctggtt 47537746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 50544825 - 50544747
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||| |||| ||||||| || ||| |||||||    
T  50544825 gttttagtcgcccgtt-tggcgaagtaggtgggaggttggaggtcgggggccggagttgttcttcttgatggagggaggt 50544747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 54439681 - 54439748
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatgg 185  Q
    ||||||||||||||| |||| |  |||| |||||||||||||| ||||||||| |||||||||||||||    
T  54439681 tgggaggttggaggttggggtcg-gagttgttcttcgtggtggagggaggtagataggattcgtgatgg 54439748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 48192409 - 48192319
Alignment:
Q  79 tggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||  |||||||||| |||| ||| |||||||||||||||||||||||| |||||   ||||  |||||| |||||| ||||||||||    
T  48192409 tggtatcgagttttagtcgtccgt-atggcgaagtaggtgggaggttggaggttgggggttggagtttttcttcttggtggagggaggtagg 48192319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 52250691 - 52250735
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcg 161  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||    
T  52250691 tgggaggttggaggttgggggccggagtggttcttcttggtggcg 52250735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 6176016 - 6176079
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttctt 151  Q
    |||||||||||| | |||| |||| ||||||| ||||||||||| ||||||| ||||| |||||    
T  6176016 gttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttctt 6176079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 8943914 - 8943869
Alignment:
Q  121 aggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  8943914 aggttggaggttgggg-ccagagtggttcttcttggtggcgggaggt 8943869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 23819160 - 23819127
Alignment:
Q  94 gtcgcccgttatgacgaagtaggtgggaggttgg 127  Q
    ||||||||||||| ||||||||||||||||||||    
T  23819160 gtcgcccgttatggcgaagtaggtgggaggttgg 23819127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 8130524 - 8130464
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    ||||||||||||||| ||||||| |||||||||||  ||||||  ||||||  ||||||||    
T  8130524 tgggaggttggaggttgggggccggagtggttctttttggtggaaggaggttagtaggatt 8130464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 43121203 - 43121251
Alignment:
Q  79 tggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttgg 127  Q
    |||||||  ||||||||||||||||||| |||| ||||| |||||||||    
T  43121203 tggtatcgagttttagtcgcccgttatggcgaaataggtaggaggttgg 43121251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 18671810 - 18671636
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| |||||| ||  ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  18671810 ggaggatgttagttgatagagcagggttgtggtatcatgttttagtcgctcgttatggcgaagtaggtgggaggttggaggtggggggccggagtgtttc 18671711  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgt 224  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  18671710 ttcatggtggcgggaggtaggtaggattcgtgatggtgacagtgacataggtggagggtggttcgatgatagtgt 18671636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 18768048 - 18767878
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| |||||||||  ||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||| |||    
T  18768048 ggaggatgttagttgatagagaagggttgtggtatcaggttttagtctcccgttatggcaaagtaggtgggaggttggaggtggggggccggagtgtttc 18767949  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgata 220  Q
    || ||||||||||||||||||||||||||||||||| |  ||||||||||| |||||||||||||||||||    
T  18767948 tttgtggtggcgggaggtaggtaggattcgtgatggcgttggtgacataggtggagggtggttcggtgata 18767878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 54 - 244
Target Start/End: Original strand, 34457662 - 34457852
Alignment:
Q  54 gatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcg 153  Q
    |||||||||| |||||||||  ||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||| ||||| |    
T  34457662 gatgttagttgatagagaagggttgtggtatcaggttttagtcacccgttatggcaaagtaggtgggaggttggaggtggggggccggagtgtttctttg 34457761  T
Q  154 tggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    ||||||||||||||||| ||||| ||||||||||  |||||| |||| || |||||||||||||||||||| || || | |||||||||||    
T  34457762 tggtggcgggaggtaggcaggatccgtgatggtgctggtgacttaggtggcgggtggttcggtgatagtgttagacggagggtgggtgatg 34457852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 36227650 - 36227794
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| |||||||||  || |||||  ||||| ||||||| || |||| |||||||||||||||||||||||||||||||| ||||| |||    
T  36227650 ggaggatgttagttgatagagaaggtttatggtacaatgttctagtcgcgcggtatggcgaagtaggtgggaggttggaggtggggggccggagtgattc 36227749  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtga 194  Q
    ||| |||||||| ||  |||||||||||||||||||||| |||||    
T  36227750 ttcttggtggcgtgatttaggtaggattcgtgatggtgatggtga 36227794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 5327403 - 5327267
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggagg-tggggggccagagtggtt 148  Q
    |||||||||||||  |||||||||  || ||||| ||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| ||||||||||    
T  5327403 ggaggatgttagtggatagagaaggtttatggtaccatgttttagtcgcccgatatggcgaggtaggtgggaggttggaggctggggggacagagtggtt 5327304  T
Q  149 cttcgtggtggcgggaggtaggtaggattcgtgatgg 185  Q
    |||  ||||||| ||||||||| | ||||||||||||    
T  5327303 cttattggtggcaggaggtagggacgattcgtgatgg 5327267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 17856369 - 17856202
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||       ||||||||| || |||| ||||    
T  17856369 ggaggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgttatggcgaaataggtggg-------aggtgggggtccggagttgttc 17856277  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgt 224  Q
    ||| |||||||| |||||||| |||||| |||| ||||  || ||  |||| || || |||||||| ||||||||    
T  17856276 ttcttggtggcgagaggtagggaggatttgtgagggtgttggcgatgtagggggtggttggttcggcgatagtgt 17856202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 41340173 - 41340092
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggt 131  Q
    |||||||||||||  |||||||||  |||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  41340173 ggaggatgttagtggatagagaaggtttgtggtaccatgttttagtcgcccgatatggcgaggtaggtgggaggttggaggt 41340092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 33795895 - 33795975
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggta 168  Q
    ||||||||||| ||||||  ||| ||  |||||||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  33795895 gttttagtcgctcgttattgcgaggtttgtgggaggttggagggtgggggccggagtggttcttcgtggtggcgggaggta 33795975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 13553684 - 13553827
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||| ||  |||||| ||  |||||||||  |||| ||||||||||||||| ||| || || |||||||||||||| ||||||| |||| ||||    
T  13553684 ggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttc 13553783  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtg 193  Q
    |   |||||| ||||||| || |||||| | |||||||| ||||    
T  13553784 tcattggtggagggaggtggggaggattagagatggtgatggtg 13553827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 45993177 - 45993089
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    ||||||||||||||||||| ||| ||  ||||||||||||||||  |||||| |||| ||||||| |||||||||||||| || ||||||    
T  45993177 gttttagtcgcccgttatggcgaggtgtgtgggaggttggaggt-tggggccggagttgttcttcttggtggcgggaggtggggaggatt 45993089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 4077870 - 4077831
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttgg 127  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  4077870 gttttagtcgcccgttatggcgaagtaggtgggaggttgg 4077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 13440667 - 13440592
Alignment:
Q  76 ttgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttctt 151  Q
    ||||||||||  |||||||||||| | |||| |||| ||||||| ||||||||||| ||||||| ||||| |||||    
T  13440667 ttgtggtatcgggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttctt 13440592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 34232303 - 34232219
Alignment:
Q  79 tggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||  |||||||||| |||||||| || |||||||||||||||       ||||||| |||| ||||||| |||||| ||||||||||    
T  34232303 tggtatcgagttttagtcgaccgttatggcggagtaggtgggaggtt-------gggggccggagttgttcttcttggtggagggaggtagg 34232219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 17056102 - 17056034
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatgg 185  Q
    ||||||||||| ||| ||||||| ||||| |||||||||||||  |||||| |  || |||||||||||    
T  17056102 tgggaggttggtggttgggggccggagtgtttcttcgtggtggaaggaggtggcgagtattcgtgatgg 17056034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 44082512 - 44082686
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||    
T  44082512 ggaggatgttagttgatagagaagggttgtggtatcaggttttagtcgcccgttatggcgaagtaggtgggaggttggaggtggggggtcggagtgtttc 44082611  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgt 224  Q
    || ||||||||||||||||||||||||||||||||| |  ||||||| ||| |||||||||||||||||||||||    
T  44082612 tttgtggtggcgggaggtaggtaggattcgtgatggcgttggtgacacaggtggagggtggttcggtgatagtgt 44082686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 6901523 - 6901414
Alignment:
Q  76 ttgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtagga 175  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||  ||||||||||| ||||||| ||| ||||| ||||    
T  6901523 ttgtggtatcatgttttagtcgcccgttatggcgaggtaggtgggaggttggaggttgggggccgaagtggttcttcttggtggcaggaagtagggagga 6901424  T
Q  176 ttcgtgatgg 185  Q
    ||||||||||    
T  6901423 ttcgtgatgg 6901414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 23942727 - 23942638
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggcc 139  Q
    ||||| |||||||| |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23942727 ggaggttgttagttgatagagaagggttgtggtatcatgttttagtcgcccgttgtgacgaagtaggtgggaggttggaggtggggggcc 23942638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 12134967 - 12134833
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  | |||||||  |||||||||||| |||||||||||||||||| ||| |||| | ||||||||||||| ||||||| |||||||||    
T  12134967 ggaggatgttagtgaagagagaaggtttgtggtatcatattttagtcgcccgttatggcgaggtagcttggaggttggaggttgggggccggagtggttc 12134868  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatgg 185  Q
    ||  ||||||| ||||||||| |||| |||||||||    
T  12134867 tttatggtggcaggaggtagggagga-tcgtgatgg 12134833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 17659430 - 17659309
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtgacg 190  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||  ||||| | || ||||  |    
T  17659430 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagggacggtggag 17659331  T
Q  191 gtgacataggcggagggtggtt 212  Q
    ||||||| || ||||| |||||    
T  17659330 gtgacattggtggaggctggtt 17659309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 11393874 - 11393992
Alignment:
Q  76 ttgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtagga 175  Q
    |||||||||  |||| | ||||||||||||| ||| || |||||||||||||||  |||||||| |||| ||||||| |||||| |||||||||| ||||    
T  11393874 ttgtggtatagtgttcttgtcgcccgttatggcgaggttggtgggaggttggagtcggggggccggagttgttcttcttggtggagggaggtagggagga 11393973  T
Q  176 ttcgtgatggtgacggtga 194  Q
    |||| ||||| || |||||    
T  11393974 ttcgagatggagatggtga 11393992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 36157755 - 36157677
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||| ||||||| |||||| |||||||    
T  36157755 gttttagtcgcccgt-atggcgaagtaggtgggaggttggaggttgggggccggagttgttcttcttggtggagggaggt 36157677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 4987603 - 4987692
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggt-ggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    ||||||||||||||||||| ||| ||  |||| ||||||||||| ||||||||||||| ||||||| |||||||||||||| || ||||||    
T  4987603 gttttagtcgcccgttatggcgaggtgtgtgg-aggttggaggttggggggccagagttgttcttcttggtggcgggaggtggggaggatt 4987692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 24794327 - 24794262
Alignment:
Q  120 gaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatgg 185  Q
    |||||||||||||||||||| |||| ||||||| |||||| |||||||||| |||||||| |||||    
T  24794327 gaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatgg 24794262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 23942637 - 23942577
Alignment:
Q  169 ggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggc 229  Q
    ||||||||||||||||||||||||||| |||| || |||||||| ||||||||||| ||||    
T  23942637 ggtaggattcgtgatggtgacggtgacgtaggtggtgggtggtttggtgatagtgttaggc 23942577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 28992799 - 28992846
Alignment:
Q  120 gaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||| |||| ||||||||||||| ||||||||||||| |||||||    
T  28992799 gaggttgaaggttgggggccagagtgtttcttcgtggtggagggaggt 28992846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 4310409 - 4310469
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    ||||||||||||||  ||||||| |||||||||||  ||||||  |||||| |||||||||    
T  4310409 tgggaggttggaggatgggggccggagtggttctttttggtggaaggaggttggtaggatt 4310469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 45255376 - 45255412
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttgg 127  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  45255376 ttagtcgcccattatggcgaagtaggtgggaggttgg 45255412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 34853148 - 34853335
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||| |||||||||  |||||||||||||||||||||||||  |||| |||||||||||||||       |||||||||| |||||||||    
T  34853148 ggaggatgttagttgatagagaaggtttgtggtatcatgttttagtcgcccaatatggcgaagtaggtgggag-------gtggggggcctgagtggttc 34853240  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    ||||||||||||||||||| | | |||||||||||||||||||||||| || || |||||||| ||||||||||| ||| | | |||||||||||    
T  34853241 ttcgtggtggcgggaggtaagcatgattcgtgatggtgacggtgacattggtggtgggtggtttggtgatagtgttaggtggagggtgggtgatg 34853335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 25504532 - 25504611
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||||||||||||||| ||| ||  |||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  25504532 gttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttgggggccagagttgttcttcttggtggcgggaggt 25504611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 39430917 - 39430774
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||| ||  |||||| ||  |||||||||  |||| ||||||||||||||| ||| || ||||||||||||||||| ||||||| |||| ||||    
T  39430917 ggaggatgttggtagatagagtagggttgtggtatagtgttctagtcgcccgttatggcgaggttggtgggaggttggaggttgggggccggagttgttc 39430818  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtg 193  Q
    ||  |||||| ||||||| || |||||| | |||||||| ||||    
T  39430817 ttattggtggagggaggtggggaggattagagatggtgatggtg 39430774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 28097492 - 28097582
Alignment:
Q  76 ttgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||  |||||| ||||  |||||| |||||| |||||||    
T  28097492 ttgtggtatcgagttttagtcgcccgttatggcgaagtaggtgggaggttggaggt-tggggccggagttattcttcttggtggagggaggt 28097582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 49264501 - 49264607
Alignment:
Q  87 tgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggt 186  Q
    |||| ||||||||||||||| ||| || || |||||||||||||| ||||||| |||| ||||||  |||||| ||||||| || |||||| | ||||||    
T  49264501 tgttatagtcgcccgttatggcgaggttggagggaggttggaggttgggggccggagttgttcttattggtggagggaggtggggaggattagagatggt 49264600  T
Q  187 gacggtg 193  Q
    || ||||    
T  49264601 gatggtg 49264607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 26721232 - 26721156
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||| |||||||| ||||||||||||||||||||||||  |||||| |||| |||| || |||||| |||||||    
T  26721232 ttagtcgtccgttatggcgaagtaggtgggaggttggaggttaggggccggagttgttcgtcttggtggagggaggt 26721156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 30110466 - 30110544
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||  |||| ||||||| || ||| ||||||||||    
T  30110466 ttagtcgcccgttatggcgaagtaggtgggaggttggaggt-tggggctggagttgttcttcttgatggagggaggtagg 30110544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 10710738 - 10710778
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggt 131  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10710738 ttagtcgcccgttatggcgaagtaggtgggaggttggaggt 10710778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 48072957 - 48073032
Alignment:
Q  76 ttgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttctt 151  Q
    ||||||||||  |||||||||| | | |||| |||| ||||||| ||||||||||| ||||||| ||||| |||||    
T  48072957 ttgtggtatcgggttttagtcgacaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttctt 48073032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 7396260 - 7396298
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttg 126  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  7396260 gttttagtcgcccgctatggcgaagtaggtgggaggttg 7396298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 21405410 - 21405368
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtgg 159  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||    
T  21405410 tgggaggttggtggttgggggccagagtgtttcttcgtggtgg 21405368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 20796238 - 20796165
Alignment:
Q  120 gaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtg 193  Q
    |||||||||||| ||||||| |||| ||||||  |||||| ||||||| || |||||| | |||||||| ||||    
T  20796238 gaggttggaggttgggggccggagttgttcttattggtggagggaggtggggaggattagagatggtgatggtg 20796165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 22191349 - 22191417
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatgg 185  Q
    ||||||||||| ||| ||||||| ||||| |||||||||||||  |||||| |  || |||||||||||    
T  22191349 tgggaggttggtggttgggggccggagtgtttcttcgtggtggaaggaggtggcgagtattcgtgatgg 22191417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 45270814 - 45270770
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcg 161  Q
    ||||||||||||||| ||||||| |||||||| | ||||||||||    
T  45270814 tgggaggttggaggttgggggccggagtggttatgcgtggtggcg 45270770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 26694568 - 26694374
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  |||||| ||  ||| ||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||  ||||| |||    
T  26694568 ggaggatgttagtggatagagtagggttgcggtatcaggttttagtcgtccgttatggcgaagtagatgggaggttggaggtggggggctggagtgtttc 26694469  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtgacataggcggagggtggttcggtgatagtgtcaggcgaacggtgggtgatg 244  Q
    || |||||||||||||||||| ||||||||||| || |  |||||| |||| || |||||||||||||||||||| || || | |||||||||||    
T  26694468 tttgtggtggcgggaggtaggcaggattcgtgacggggctggtgacttaggtggcgggtggttcggtgatagtgttagacggagggtgggtgatg 26694374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 53810481 - 53810337
Alignment:
Q  50 ggaggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttc 149  Q
    |||||||||||||  |||||||||  |||||||| ||||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  53810481 ggaggatgttagtcgatagagaaggtttgtggtaccatgttttagtcgtctgttatggcgaagtaggtgggaggttggaggtggggggccggagtgattc 53810382  T
Q  150 ttcgtggtggcgggaggtaggtaggattcgtgatggtgacggtga 194  Q
    ||| |||| ||  ||  ||||||||| ||||||||| || |||||    
T  53810381 ttcttggtagcttgatataggtaggactcgtgatggagatggtga 53810337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 19115038 - 19114932
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtg 187  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||| | ||||| |    
T  19115038 gttttagtcgctcgttatggcgaagtatgtgggaggttggaggttgggggccagagttgttcttcttggtggcgggaggtagggaggattagggatgggg 19114939  T
Q  188 acggtga 194  Q
    |||||||    
T  19114938 acggtga 19114932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 10562874 - 10562953
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||| ||||||||||    
T  10562874 ttagtcgcccgttatggcgaagtaggtgggaggttggaggttgggggccagagttgttcttcttggtggagggaggtagg 10562953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 4524142 - 4524259
Alignment:
Q  65 atagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcggga 164  Q
    ||||||| | |||||| ||||||||| ||||||||||| ||| ||||||||| |||||||||||||| ||||||| |||| ||||||| ||||||| |||    
T  4524142 atagagatggattgtgatatcatgttctagtcgcccgt-atggcgaagtaggcgggaggttggaggttgggggccggagttgttcttcttggtggcagga 4524240  T
Q  165 ggtaggtaggattcgtgat 183  Q
    |||||| |||||| |||||    
T  4524241 ggtagggaggatttgtgat 4524259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 20396179 - 20396102
Alignment:
Q  93 agtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||||||||| |||||| ||||||||||||||| | ||||||| |||| ||||||| |||||||||||||||||    
T  20396179 agtcgcccgttatggcgaagtgggtgggaggttggagtttgggggccggagttgttcttcttggtggcgggaggtagg 20396102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 34975146 - 34975081
Alignment:
Q  79 tggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagt 144  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| ||||    
T  34975146 tggtatcatgttttagtcgtccgttatgacgaagtaggtgggaggttgaaggttgggggccggagt 34975081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 42778837 - 42778758
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||| |||| ||||||| |||||| ||||| ||||    
T  42778837 ttagtcgcccgttatggcgaagtaggcgggaggttggaggttgggggccggagttgttcttcttggtggagggagatagg 42778758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 8935676 - 8935571
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtg 187  Q
    ||||||||||| ||||||| ||| ||  |||||||||||||||  ||||||| |||| ||||||| |||||||||||||| || |||||| | ||||| |    
T  8935676 gttttagtcgctcgttatggcgaggtgtgtgggaggttggaggatgggggccggagttgttcttcttggtggcgggaggtggggaggattagggatgggg 8935577  T
Q  188 acggtg 193  Q
    ||||||    
T  8935576 acggtg 8935571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 13158324 - 13158402
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||    
T  13158324 gttttagtcacccgttatggcgaagcaggtgggaggttggaggt-gggggctagagttgttcttcttggtggagggaggt 13158402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 42953064 - 42953129
Alignment:
Q  120 gaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatgg 185  Q
    |||||||||||||||||||| |||| ||||||| |||||| |||||||||| |||||||| |||||    
T  42953064 gaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatgg 42953129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 29553278 - 29553357
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||||| |||||||||  || ||  |||||||||||||||  ||||||| ||||||||||| |||||||||||||||    
T  29553278 gttttagtcacccgttatggtgaggtttgtgggaggttggaggatgggggccggagtggttctttgtggtggcgggaggt 29553357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 23657899 - 23657794
Alignment:
Q  88 gttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggattcgtgatggtg 187  Q
    ||||||||||||||||||  ||| ||  |||||||||||||||  |||||||  ||| ||||||| ||||||||||||||  | |||||| | ||||| |    
T  23657899 gttttagtcgcccgttatagcgaggtgtgtgggaggttggaggatgggggccgaagttgttcttcttggtggcgggaggtgaggaggattagggatgggg 23657800  T
Q  188 acggtg 193  Q
    ||||||    
T  23657799 acggtg 23657794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 53486472 - 53486520
Alignment:
Q  79 tggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttgg 127  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  53486472 tggtatcgagttttagtcgcccgttatggcgaagtaggtgggaggttgg 53486520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 23873002 - 23873077
Alignment:
Q  76 ttgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttctt 151  Q
    ||||||||||  |||||||||||| | |||| |||| ||||||| ||||||||||| ||||||| ||||| |||||    
T  23873002 ttgtggtatcgggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttctt 23873077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 49925833 - 49925884
Alignment:
Q  116 gtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||    
T  49925833 gtgggaggttggaggttgggggccggagttgttcttcttggtggcgggaggt 49925884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 55299226 - 55299151
Alignment:
Q  76 ttgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttctt 151  Q
    ||||||||||  |||||||||||| | |||| |||| ||||||| ||||||||||| ||||||| ||||| |||||    
T  55299226 ttgtggtatcgggttttagtcgccaggtatggcgaattaggtggcaggttggaggttgggggccggagtgtttctt 55299151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 40688639 - 40688579
Alignment:
Q  117 tgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtaggtaggatt 177  Q
    ||||||||||||||  ||||||| |||||||||||  ||||||  |||||| |||||||||    
T  40688639 tgggaggttggaggatgggggccggagtggttctttttggtggaaggaggttggtaggatt 40688579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 17782 - 17648
Alignment:
Q  53 ggatgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttc 152  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||  |||| |||||||    
T  17782 ggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgttatggcgaaataggtgggaggttggaggtggggagctggagttgttcttc 17683  T
Q  153 gtggtggcgggaggtaggtaggattcgtgatggtg 187  Q
     ||||||||||||||||| |||||| |||| ||||    
T  17682 ttggtggcgggaggtagggaggatttgtgagggtg 17648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 2414 - 2493
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||||||||||| |||||| ||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||    
T  2414 ttagtcgcccgttatggcgaagtgggtgggaggttggaggttgggggccggagttgttcttcttggtggcgggaggtagg 2493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 8131 - 8055
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| || |||||| |||||||    
T  8131 ttagtcgcccgttatgacgaagtaggtgggaggttggaggttgggggccggagttgttcgtcttggtggagggaggt 8055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 13065 - 12989
Alignment:
Q  91 ttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggt 167  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| || |||||| |||||||    
T  13065 ttagtcgcccgttatgacgaagtaggtgggaggttggaggttgggggccggagttgttcgtcttggtggagggaggt 12989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 15157 - 15275
Alignment:
Q  56 tgttagtttatagagaagaattgtggtatcatgttttagtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtg 155  Q
    |||||||  |||||||||  |||||||| |||||||||||| |||||| || ||||||||||||||||  |||||||||||||| ||||| |||||| ||    
T  15157 tgttagtcgatagagaaggtttgtggtaccatgttttagtctcccgtt-tggcgaagtaggtgggaggaaggaggtggggggccggagtgtttcttcttg 15255  T
Q  156 gtggcgggaggtaggtagga 175  Q
    |||||| ||  |||||||||    
T  15256 gtggcgtgatttaggtagga 15275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 182712 - 182635
Alignment:
Q  93 agtcgcccgttatgacgaagtaggtgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagg 170  Q
    |||||||||||||| |||||| ||||||||||||||| | ||||||| |||| ||||||| |||||||||||||||||    
T  182712 agtcgcccgttatggcgaagtgggtgggaggttggagtttgggggccggagttgttcttcttggtggcgggaggtagg 182635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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