View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0681_low_6 (Length: 458)
Name: NF0681_low_6
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0681_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 86 - 310
Target Start/End: Original strand, 49765474 - 49765698
Alignment:
| Q |
86 |
taccattatgccatagaggacttcttagttctgaacactgaagactctactctctagtctctagctcatactcagaacttcacaatcataacacaaaaaa |
185 |
Q |
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| T |
49765474 |
taccattatgccatagaggacttcttagttctgaacactgaagactctactctctagtctctagctcatactcagaacttcacaatcataacacaaaaaa |
49765573 |
T |
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| Q |
186 |
cctgaatattaacaagaagcaagtatccacaaaactgaaagatagagctagctagctagaactttgaagagttactagaaagttatgatttaattaagac |
285 |
Q |
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| T |
49765574 |
cctgaatattaacaagaagcaagtatccacaaaactgaaagatagagctagctagctagaactttgaagagttactagaaagttatgatttaattaagac |
49765673 |
T |
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| Q |
286 |
aaacccataagataaacaaagtagt |
310 |
Q |
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| T |
49765674 |
aaacccataagataaacaaagtagt |
49765698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 49765701 - 49765738
Alignment:
| Q |
326 |
agaccagtagtaaattaattaacttgacactaattaatg |
364 |
Q |
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| T |
49765701 |
agaccagtagtaa-ttaattaacttgacactaattaatg |
49765738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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