View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0681_low_9 (Length: 386)
Name: NF0681_low_9
Description: NF0681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0681_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 41813399 - 41813014
Alignment:
| Q |
1 |
gccactaatacgtaattttctctgatcacagtcacacagttctttatgtgaaaaccaataaacataacaatattaagaaacaattaagcaaaccatttct |
100 |
Q |
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| T |
41813399 |
gccactaatacataattttctctaatcacagtcacacagttctttatgtgaaaaccaataaacataacaatattaagaaacaattaaacaaaccatttct |
41813300 |
T |
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| Q |
101 |
tacagccaaataagatctacaacatgctagattgttaagtatttggtcaatatctgagtacgctaatttggtgctggtttaaactttttagggtcaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41813299 |
tacagccaaataagatctacaacatgctagattgttaagtatttggtcaatatctgagtacgctaatttggtgctggtttaaactttttagggtcaatat |
41813200 |
T |
|
| Q |
201 |
taaactttcggctaaattagaacattcagaatctgcttttgggattgctctattgctgagtatggttcgtagttattgataagtggataggtcgatcaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41813199 |
taaactttcggctaaattagaacattcagaatctgcttttgggattgctctattgctgagtatggttcgtagttattgataagtggataggtcgatcaag |
41813100 |
T |
|
| Q |
301 |
cagagcaagagcgaccctttcggccaggcccaaacattttttgggttaatcttatcaagtcctagtttgtaacagaatatgttcac |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41813099 |
cagagcaagagcgaccctttcggccaggcccaaacattttttgggttaatcttatcaagtcctagtttgtaacagaatatgttcac |
41813014 |
T |
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