View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0682_high_12 (Length: 308)
Name: NF0682_high_12
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0682_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 33801412 - 33801636
Alignment:
| Q |
1 |
catcaactttcagaaattcaacagatctttttgattcatcactgcaaggagaggcaatgcctggtttacaactaggaagaagaacaagaggacagctaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33801412 |
catcaactttcagaaattcaacagatctttttgattcatcatcgcaaggagaggcaaaacctggtttacaactaggaagaagaacaagaggacagctaca |
33801511 |
T |
|
| Q |
101 |
catacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccatttgatccacca |
200 |
Q |
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| T |
33801512 |
catacggttgtttgagcatattccgtagggatcacaaggttctggtgtaccacaaggatctcttggtattcttagtgaagcatcactgtttgatccagta |
33801611 |
T |
|
| Q |
201 |
ccgttgagattagagaaagtgatga |
225 |
Q |
| |
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||||||||||| |||||||| |||| |
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| T |
33801612 |
ccgttgagattcgagaaagtaatga |
33801636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31028096 - 31027869
Alignment:
| Q |
1 |
catcaactttcagaaattcaacagatctttttgatt---catcactgcaaggagaggcaatgcctggtttacaactaggaagaagaacaagaggacagct |
97 |
Q |
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||||| ||||||||||||| | ||| ||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
31028096 |
catcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggtttacaactaggaagaagaacatgaggacagct |
31027997 |
T |
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| Q |
98 |
acacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccatttgatcca |
197 |
Q |
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|||| |||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
31027996 |
acacgtacgtttgtttgcgcatatattgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgttgaagaatcaccgtttgatcca |
31027897 |
T |
|
| Q |
198 |
ccaccgttgagattagagaaagtgatga |
225 |
Q |
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|||||||||||||| |||||||| |||| |
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| T |
31027896 |
ccaccgttgagattcgagaaagtaatga |
31027869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 33805963 - 33806102
Alignment:
| Q |
79 |
gaagaacaagaggacagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttga |
178 |
Q |
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|||||||| ||||||||||||| ||||||| |||| || || |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33805963 |
gaagaacagaaggacagctacacctacggttatttgcacaaatgttgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgttga |
33806062 |
T |
|
| Q |
179 |
ggaatcaccatttgatccaccaccgttgagattagagaaa |
218 |
Q |
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| T |
33806063 |
ggaatcaccatttgatccaccaccgttgagattagagaaa |
33806102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 33812341 - 33812202
Alignment:
| Q |
79 |
gaagaacaagaggacagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttga |
178 |
Q |
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|
|||||||| ||||||||||||| ||||||| |||| || || |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33812341 |
gaagaacagaaggacagctacacctacggttatttgcacaaatgttgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgttga |
33812242 |
T |
|
| Q |
179 |
ggaatcaccatttgatccaccaccgttgagattagagaaa |
218 |
Q |
| |
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| T |
33812241 |
ggaatcaccatttgatccaccaccgttgagattagagaaa |
33812202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 49462972 - 49462841
Alignment:
| Q |
89 |
aggacagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcacca |
188 |
Q |
| |
|
||||||||||||| | |||||||| | |||||| || || ||||| || || || ||||| ||||| |||||||||||| || || || ||||||||| |
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| T |
49462972 |
aggacagctacaccttcggttgttcgtgcatatgctataaggatcgcatggctccggtgtcccacaaggatcttgtggtatcctagtcgaagaatcacca |
49462873 |
T |
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| Q |
189 |
tttgatccaccaccgttgagattagagaaagt |
220 |
Q |
| |
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|| || ||||||| |||||||||||||||||| |
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|
| T |
49462872 |
ttcgacccaccactgttgagattagagaaagt |
49462841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 10071050 - 10071112
Alignment:
| Q |
158 |
atcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaagt |
220 |
Q |
| |
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||||||||||||||||||||| ||||||| ||| ||||||| ||||||| |||||||||| |
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| T |
10071050 |
atcttgtggtattcttgttgatgaatcactgtttattccaccattgttgagagtagagaaagt |
10071112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 32705154 - 32705193
Alignment:
| Q |
238 |
tgctggttttaggggattgaacctaagacatcctccttca |
277 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||| |
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| T |
32705154 |
tgctagttttaggggatcgaacctaagacatcctccttca |
32705193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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