View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0682_high_20 (Length: 250)

Name: NF0682_high_20
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0682_high_20
NF0682_high_20
[»] chr7 (1 HSPs)
chr7 (3-235)||(32705702-32705934)
[»] chr8 (1 HSPs)
chr8 (1-237)||(23144662-23144900)
[»] chr3 (1 HSPs)
chr3 (1-169)||(2309831-2309999)
[»] chr6 (6 HSPs)
chr6 (1-169)||(20420168-20420336)
chr6 (1-107)||(20415665-20415771)
chr6 (1-73)||(20417373-20417445)
chr6 (1-76)||(30518936-30519010)
chr6 (174-237)||(30518869-30518932)
chr6 (94-169)||(20415435-20415510)
[»] chr2 (2 HSPs)
chr2 (1-76)||(6050875-6050949)
chr2 (174-237)||(6050808-6050871)
[»] scaffold0585 (2 HSPs)
scaffold0585 (1-68)||(1455-1521)
scaffold0585 (1-68)||(3864-3930)
[»] chr4 (1 HSPs)
chr4 (1-57)||(20265021-20265077)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 32705702 - 32705934
Alignment:
Q  3 ttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaattattagtaccgtcatggttttaataaaataattgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  32705702 ttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaattattagtactgttatggttttaataaaataattgg 32705801  T
Q  103 cagcaggttgcaagttagtgattatctcatggagatgtaattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32705802 cagcaggttgcaagttagtgattatctcatggagatgtaattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcac 32705901  T
Q  203 gttggcattatggtggttactgttcagttttgc 235  Q
    |||||||||||||||||||||||||||||||||    
T  32705902 gttggcattatggtggttactgttcagttttgc 32705934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 23144900 - 23144662
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataat--ttggctattaatccaaatggtcaattattagtaccgtcatggttttaataaaataa 98  Q
    ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||| |||||||||||||||||||||  || ||||||||||||||||||    
T  23144900 ttttaattccaaacaagcatgctattttcctagtaaaataatatttggctattaaaccaaatggtcaattattagtattgttatggttttaataaaataa 23144801  T
Q  99 ttggcagcaggttgcaagttagtgattatctcatggagatgtaattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaa 198  Q
    || ||| || ||||  ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  23144800 tttgcaacaagttgtgagttagtgattatctcatgaagatgtaatcagctcaaggtgctgattcatgttctcggctcaaaaaggccaataaaatgattaa 23144701  T
Q  199 tcacgttggcattatggtggttactgttcagttttgcct 237  Q
    |||| |||||||||| || ||||||||||||||||||||    
T  23144700 tcacattggcattatagtagttactgttcagttttgcct 23144662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 2309999 - 2309831
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaattattagtaccgtcatggttttaataaaataatt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||    
T  2309999 ttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattagcactgttatggttctaataaaataatt 2309900  T
Q  101 ggcagcaggttgcaagttagtgattatctcatggagatgtaattagcccaaggtgctgattcatgttct 169  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  2309899 ggcagcaggttgtgagtaagtgattatctcatggagatgtaattatcccaaagtgctgattcatgttct 2309831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 20420336 - 20420168
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaattattagtaccgtcatggttttaataaaataatt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||    
T  20420336 ttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattagcacagttatggttctaataaaataatt 20420237  T
Q  101 ggcagcaggttgcaagttagtgattatctcatggagatgtaattagcccaaggtgctgattcatgttct 169  Q
    ||||||| ||||  ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  20420236 ggcagcaagttgtgagtaagtgattatttcatggagatgtaattatcccaaggtgctgattcatgttct 20420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 20415771 - 20415665
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaattattagtaccgtcatggttttaataaaataatt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||    
T  20415771 ttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattagcacagttatggttctaataaaataatt 20415672  T
Q  101 ggcagca 107  Q
    |||||||    
T  20415671 ggcagca 20415665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20417373 - 20417445
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaattattag 73  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20417373 ttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattag 20417445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30519010 - 30518936
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaattattagtac 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  30519010 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctatt-atacgaatggtcaattattagtac 30518936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 30518932 - 30518869
Alignment:
Q  174 tcaaaaaggccaataacatgattaatcacgttggcattatggtggttactgttcagttttgcct 237  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30518932 tcaaaaatgccaataacatgattaatcacgttggcattatggtggttattgttcagttttgcct 30518869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 20415510 - 20415435
Alignment:
Q  94 aataattggcagcaggttgcaagttagtgattatctcatggagatgtaattagcccaaggtgctgattcatgttct 169  Q
    |||||||||||||| ||||  ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  20415510 aataattggcagcaagttgtgagtaagtgattatttcatggagatgtaattatcccaaggtgctgattcatgttct 20415435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6050949 - 6050875
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaattattagtac 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  6050949 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctatt-agacaaatggtcaattattagtac 6050875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 6050871 - 6050808
Alignment:
Q  174 tcaaaaaggccaataacatgattaatcacgttggcattatggtggttactgttcagttttgcct 237  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6050871 tcaaaaatgccaataacatgattaatcacgttggcattatggtggctattgttcagttttgcct 6050808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1521 - 1455
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaatt 68  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  1521 ttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatcc-aatggtcaatt 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3930 - 3864
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatccaaatggtcaatt 68  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  3930 ttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatcc-aatggtcaatt 3864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 20265077 - 20265021
Alignment:
Q  1 ttttaattccaaacaagcatgttattttcctagtaaaataatttggctattaatcca 57  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20265077 ttttaattccaaacaaacatgttattttcctagtaaaataatttggctattaatcca 20265021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1203 times since January 2019
Visitors: 4407