View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0682_high_3 (Length: 448)
Name: NF0682_high_3
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0682_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 266 - 442
Target Start/End: Complemental strand, 5233185 - 5233005
Alignment:
| Q |
266 |
attgttgatgaaatatcttaatttttt---gtcaaaaaa-tactttgcaatctctttctagatttaacaaaagtttaaaattatgaccccccaatgacca |
361 |
Q |
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| T |
5233185 |
attgttgatgaaatagcttaattttgtttggtcaaaaaaatactttgcaatctctttctagatttaacaaaagtttaaaattatgaccccccaatgacca |
5233086 |
T |
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| Q |
362 |
tcttatatgtgcaatttctccatttacatatttgtgacacatgtaacacatagttttacataattgacatcttcatctcac |
442 |
Q |
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| T |
5233085 |
tcttatatgtgcaatttctccatttagacatttgtgacacatgtaacacatagttttacataattgacatcttcatgtcac |
5233005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 5233288 - 5233205
Alignment:
| Q |
155 |
aggaaggaaacccatttatttgca-cgtaccttaataggggtggacacatatatggctaccattcaaaattgtaatgaaaatac |
237 |
Q |
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| T |
5233288 |
aggaaggaaacccatttatttgaaacgtaccttagtaggggtggacacatatatggctaccattaaaaattgtagtgaaaatac |
5233205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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