View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0682_high_5 (Length: 439)

Name: NF0682_high_5
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0682_high_5
NF0682_high_5
[»] chr8 (6 HSPs)
chr8 (100-428)||(5057255-5057583)
chr8 (332-424)||(41444936-41445028)
chr8 (173-208)||(13058075-13058110)
chr8 (355-424)||(42854668-42854737)
chr8 (133-217)||(18124997-18125081)
chr8 (332-396)||(25985128-25985192)
[»] chr6 (4 HSPs)
chr6 (355-424)||(5258805-5258874)
chr6 (355-424)||(5631375-5631444)
chr6 (371-424)||(33495765-33495818)
chr6 (130-194)||(6641785-6641849)
[»] chr3 (5 HSPs)
chr3 (351-424)||(19757542-19757615)
chr3 (130-204)||(43308401-43308475)
chr3 (342-409)||(44395003-44395070)
chr3 (357-397)||(28398124-28398164)
chr3 (373-416)||(50630001-50630045)
[»] chr1 (3 HSPs)
chr1 (353-419)||(46226965-46227031)
chr1 (148-208)||(40425456-40425516)
chr1 (355-419)||(32083400-32083464)
[»] chr7 (2 HSPs)
chr7 (335-413)||(20499664-20499742)
chr7 (355-424)||(32630165-32630234)
[»] chr5 (2 HSPs)
chr5 (371-424)||(3394269-3394322)
chr5 (273-317)||(15370792-15370836)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 100 - 428
Target Start/End: Complemental strand, 5057583 - 5057255
Alignment:
Q  100 accaacacaataatctcatctctgctacgctttattctcatgttggttttttaccgcgcaacactccatcctgtacaacattgttggtcttacagttgta 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057583 accaacacaataatctcatctctgctacgctttattctcatgttggttttttaccgcgcaacactccatcctgtacaacattgttggtcttacagttgta 5057484  T
Q  200 cgataaaacatttctttcgatttgaatgctacttttgtatcacatgcagcccttcttcagtccaacaatcccacttgaattcaatactttacattttcta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057483 cgataaaacatttctttcgatttgaatgctacttttgtatcacatgcagcccttcttcagtccaacaatcccacttgaattcaatactttacattttcta 5057384  T
Q  300 tttctccatcattttgtactgttctactatggacctctaagttagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttctact 399  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057383 tttctccgtcattttgtactgttctactatggacctctaagttagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttctact 5057284  T
Q  400 caggcggaagccatacgcttataagaatt 428  Q
    |||||||||||||||| ||| ||||||||    
T  5057283 caggcggaagccatacacttctaagaatt 5057255  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 41444936 - 41445028
Alignment:
Q  332 acctctaagttagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 424  Q
    |||||||||||||||||| || ||||||||||||| || ||||| |||||||||   |||||| |||||| |||||||| |||  ||||||||    
T  41444936 acctctaagttagaaatgcttcgccttttgctaaaattacattccatatactttatcttgcttttactcatgcggaagcaatatccttataag 41445028  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 13058110 - 13058075
Alignment:
Q  173 tacaacattgttggtcttacagttgtacgataaaac 208  Q
    |||||||||||||||||||| |||||||||||||||    
T  13058110 tacaacattgttggtcttactgttgtacgataaaac 13058075  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 42854668 - 42854737
Alignment:
Q  355 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 424  Q
    ||||||||| || || ||||| |||||||  |  |||||||||||||||||||| |||||||||| ||||    
T  42854668 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgcttttaag 42854737  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 18125081 - 18124997
Alignment:
Q  133 attctcatgttggttttttaccgcgcaacactccatcctgtacaacattgttggtcttacagttgtacgataaaacatttctttc 217  Q
    ||||||||||||| | || ||||| ||||||||| | |  ||||||||||||||||| || ||||| ||||| ||| || |||||    
T  18125081 attctcatgttggctcttaaccgcccaacactccgtaccatacaacattgttggtctgactgttgtccgatagaactttcctttc 18124997  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 25985192 - 25985128
Alignment:
Q  332 acctctaagttagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttct 396  Q
    ||||||||| |||||||| || |||| ||||||||||| ||||| ||||||| ||  ||||||||    
T  25985192 acctctaagctagaaatgcttcgcctcttgctaaacttacattccatatactctgtcttgcttct 25985128  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 5258805 - 5258874
Alignment:
Q  355 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 424  Q
    ||||||||| || || ||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  5258805 ccttttgctgaagttacattccatatactttgtcttgcttctactcaggcggaagccatacgcttctaag 5258874  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 5631444 - 5631375
Alignment:
Q  355 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 424  Q
    ||||||||| || || ||||| ||||||||||  ||||||||||||| |||||| |||||| ||| ||||    
T  5631444 ccttttgctgaagttacattccatatactttgtcttgcttctactcatgcggaaaccatactcttctaag 5631375  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 33495818 - 33495765
Alignment:
Q  371 cattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 424  Q
    ||||| ||||||| ||  |||||||||||||||||||| |||||||||| ||||    
T  33495818 cattccatatactctgtcttgcttctactcaggcggaaaccatacgcttttaag 33495765  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 6641785 - 6641849
Alignment:
Q  130 tttattctcatgttggttttttaccgcgcaacactccatcctgtacaacattgttggtcttacag 194  Q
    |||||| |||||||| || |||||||| |||||||  ||||  |||||||| |||||||||||||    
T  6641785 tttattttcatgttgtttctttaccgcccaacactttatcccatacaacatcgttggtcttacag 6641849  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 19757615 - 19757542
Alignment:
Q  351 tttgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 424  Q
    |||||||||||||||| || ||||| ||||||| ||  ||||||||||| ||||||| ||||||||||| ||||    
T  19757615 tttgccttttgctaaagttacattccatatactctgtcttgcttctactaaggcggatgccatacgcttctaag 19757542  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 43308475 - 43308401
Alignment:
Q  130 tttattctcatgttggttttttaccgcgcaacactccatcctgtacaacattgttggtcttacagttgtacgata 204  Q
    ||||||||| |||||||| |||||||| |||||||||||||  ||||||||    ||||||| ||||||||||||    
T  43308475 tttattctcgtgttggttctttaccgcccaacactccatcccatacaacatcaccggtcttaaagttgtacgata 43308401  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 44395070 - 44395003
Alignment:
Q  342 tagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaag 409  Q
    |||||||| |||||||||||||||| |||||||| ||||||| |   ||||||||||  |||||||||    
T  44395070 tagaaatgctttgccttttgctaaagttgcattccatatactctatcttgcttctacataggcggaag 44395003  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 28398124 - 28398164
Alignment:
Q  357 ttttgctaaacttgcattcaatatactttggtttgcttcta 397  Q
    |||||||||| |||||||| ||||||| |||||||||||||    
T  28398124 ttttgctaaaattgcattccatatactatggtttgcttcta 28398164  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 50630001 - 50630045
Alignment:
Q  373 ttcaatatactttggtttgctt-ctactcaggcggaagccatacg 416  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||    
T  50630001 ttcaatatactttgttttgctttctactcaggcggaggccatacg 50630045  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 46226965 - 46227031
Alignment:
Q  353 tgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgctt 419  Q
    ||||||||||| || || ||||  ||| |||||| ||||||||||||||||||||| ||||||||||    
T  46226965 tgccttttgctgaagttacatttcataaactttgttttgcttctactcaggcggaaaccatacgctt 46227031  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 40425516 - 40425456
Alignment:
Q  148 ttttaccgcgcaacactccatcctgtacaacattgttggtcttacagttgtacgataaaac 208  Q
    ||||||| | || |||||||||  |||||||||||||||||||| ||||||||| ||||||    
T  40425516 ttttaccacccaccactccatcacgtacaacattgttggtcttatagttgtacggtaaaac 40425456  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 32083400 - 32083464
Alignment:
Q  355 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgctt 419  Q
    ||||||||| || || ||||| |||||||  |  |||||||||||||||||||| ||||||||||    
T  32083400 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgctt 32083464  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 20499742 - 20499664
Alignment:
Q  335 tctaagttagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccat 413  Q
    |||||| |||||| | || ||||||||||||| || || || ||||||| |||||| ||||| ||||||| ||||||||    
T  20499742 tctaagctagaaacgcttcgccttttgctaaaattacactccatatactctggttttcttctgctcaggcagaagccat 20499664  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 32630234 - 32630165
Alignment:
Q  355 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 424  Q
    ||||||||| || || ||||| |||||||  |  |||||||||||||||||||| |||||||||| ||||    
T  32630234 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgcttctaag 32630165  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 3394322 - 3394269
Alignment:
Q  371 cattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 424  Q
    ||||| ||||||| ||  |||||||||||||||||||| |||||||||| ||||    
T  3394322 cattccatatactctgtcttgcttctactcaggcggaaaccatacgcttctaag 3394269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 15370792 - 15370836
Alignment:
Q  273 cttgaattcaatactttacattttctatttctccatcattttgta 317  Q
    ||||||||||||  |||||||||||||||| ||| ||||||||||    
T  15370792 cttgaattcaatggtttacattttctatttatccgtcattttgta 15370836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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