View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0682_low_1 (Length: 549)
Name: NF0682_low_1
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0682_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 146 - 502
Target Start/End: Complemental strand, 19887841 - 19887485
Alignment:
| Q |
146 |
gactttggtgacctcgaagaccagaagatccgaagaatgagacgggcccttgactcctccgatgtggaactagtcaaactcatggtcatgggagaaggtc |
245 |
Q |
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| T |
19887841 |
gacttcggtgacctcgaagaccagaagatccgaagaatgagacgggcccttgactcctccgatgtggaactagtcaaactcatggtcatgggagaaggcc |
19887742 |
T |
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| Q |
246 |
taaacctcgatgaagcattggcattacactatgcagttgagaattgtagccgagaagtggtgaaagccctgcttgaactcggtgctgcggatgttaacta |
345 |
Q |
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| T |
19887741 |
taaaccttgatgaagcattggcattacactatgcagttgagaattgtagccgagaagtggtgaaagccctgcttgaactcggggctgcggatgttaacta |
19887642 |
T |
|
| Q |
346 |
cccggctggacctgccgggaaaacttcccttcatgtggctgccgaaatggtgtcgccggagatggtggcagttttgcttgaccaccatgcagatcctaca |
445 |
Q |
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| T |
19887641 |
cccggctggacctgccgggaaaacttcccttcatgtggctgccgagatggtgtcgccggagatggtggcagttttgcttgaccaccatgcagatcccaca |
19887542 |
T |
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| Q |
446 |
gttagaaccgttgacggtgtcacacctttggatatacttagaaccctaacctatgat |
502 |
Q |
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| T |
19887541 |
gttagaaccgttgacggtgtcacacctttggatatacttagaaccctaacctctgat |
19887485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 19887921 - 19887878
Alignment:
| Q |
66 |
aagaacttcgtctaaaatcctccttagcacgccgctccttaatg |
109 |
Q |
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| T |
19887921 |
aagaacttcgtctaaaatcctccttagcacggcgctccttaatg |
19887878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 155 - 495
Target Start/End: Original strand, 35319305 - 35319645
Alignment:
| Q |
155 |
gacctcgaagaccagaagatccgaagaatgagacgggcccttgactcctccgatgtggaactagtcaaactcatggtcatgggagaaggtctaaacctcg |
254 |
Q |
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||||| ||||||||||| ||||| | |||||||| ||||| |||||||| || || |||||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
35319305 |
gaccttgaagaccagaaaatccgtcggatgagacgtgccctcgactcctcagacgttgaactagtgaaactcatggtaatgggagaaggcctaaacctcg |
35319404 |
T |
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| Q |
255 |
atgaagcattggcattacactatgcagttgagaattgtagccgagaagtggtgaaagccctgcttgaactcggtgctgcggatgttaactacccggctgg |
354 |
Q |
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|||||||||||||||||| ||||| ||||||||||| || ||||||| ||||||||| | | ||||||||||| || |||||||||| ||||||||| |
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| T |
35319405 |
atgaagcattggcattaccttatgccgttgagaattgcagtagagaagttgtgaaagccttattggaactcggtgcagccgatgttaacttcccggctgg |
35319504 |
T |
|
| Q |
355 |
acctgccgggaaaacttcccttcatgtggctgccgaaatggtgtcgccggagatggtggcagttttgcttgaccaccatgcagatcctacagttagaacc |
454 |
Q |
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|| |||| ||||| | ||||| | || || || ||||| || ||||| |||||||| |||||||| |||||||| || || || | || ||||| |
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| T |
35319505 |
tccaaccggtaaaaccccgcttcacattgcagcggagatggtctcaccggatatggtggctgttttgctcgaccaccacgctgacccaaatgtgagaaca |
35319604 |
T |
|
| Q |
455 |
gttgacggtgtcacacctttggatatacttagaaccctaac |
495 |
Q |
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||||| ||||| ||||| ||||| || || ||||||||||| |
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| T |
35319605 |
gttgatggtgttacaccattggacattctaagaaccctaac |
35319645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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