View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0682_low_12 (Length: 431)

Name: NF0682_low_12
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0682_low_12
NF0682_low_12
[»] chr6 (1 HSPs)
chr6 (85-418)||(29377555-29377889)
[»] chr4 (1 HSPs)
chr4 (217-418)||(10147921-10148123)
[»] chr2 (3 HSPs)
chr2 (217-418)||(42654566-42654768)
chr2 (217-418)||(36389365-36389567)
chr2 (116-214)||(734702-734799)
[»] chr1 (1 HSPs)
chr1 (216-418)||(30880663-30880866)
[»] chr3 (1 HSPs)
chr3 (217-359)||(39623673-39623814)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 85 - 418
Target Start/End: Complemental strand, 29377889 - 29377555
Alignment:
Q  85 gtattatagttttactttaatttattaagattactagtgtatttacctggcattgctcagattatacatataaatatggataaccaaaacattttatgca 184  Q
    |||||||| | ||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  29377889 gtattatactcttactttaatttattaagattactagtatatttatccggcattgctcaggttatacatataattatggataaccaaaacattttatgca 29377790  T
Q  185 tgtattggcaaataaaatataacacggacagacattggcggagctacatgcatctcaggggatgcagctgaaccccttgggttcttaaatttacacctac 284  Q
    |||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  29377789 tgtatccgcaaataaaatataacacgggcagacattggcggagctacatgcatctcaggggatgcagttgaaccccttgggttattaaaattacacctac 29377690  T
Q  285 aaatctttttaatttcaactttaaatcccttcaaaaattaaatttgcacccttatcacaaagattgtttcacttctgcacctctactttctcttttttac 384  Q
    ||||||||| |||||||||||| |||||| |  ||| |||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  29377689 aaatcttttcaatttcaactttgaatcccctggaaatttaagtttgcacccttatctcaaagattgtttcacttctacacctctactttctcttttttac 29377590  T
Q  385 agatttgaata-ttggttgtatctctttagttttc 418  Q
    ||||||||||| |||||||||||||||||||||||    
T  29377589 agatttgaatatttggttgtatctctttagttttc 29377555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 217 - 418
Target Start/End: Complemental strand, 10148123 - 10147921
Alignment:
Q  217 cattggcggagctacatgcatctcaggggatgcagctgaaccccttgggttcttaaatttacacctacaaatctttttaatttcaactttaaatcccttc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||| |||||| |     
T  10148123 cattggcggagctacatgcatctcaggggatgcagctgaaccccctgggttcttaaaattacacctacaaatcttttcaatttcaactttgaatcccctg 10148024  T
Q  317 aaaaattaaatttgcacccttatcacaaagattgtttcacttctgcacctctactttctcttttttacagatttgaata-ttggttgtatctctttagtt 415  Q
     ||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  10148023 gaaatttaagtttgcacccttatctcaaagatcgtttcacttctgcacctctactttctcttttttacagatttaaatatttggttgtatctctttagtt 10147924  T
Q  416 ttc 418  Q
    |||    
T  10147923 ttc 10147921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 217 - 418
Target Start/End: Original strand, 42654566 - 42654768
Alignment:
Q  217 cattggcggagctacatgcatctcaggggatgcagctgaaccccttgggttcttaaatttacacctacaaatctttttaatttcaactttaaatcccttc 316  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||  |||||||||||| |||||| |     
T  42654566 cattggcggagttacatgcatctcaggggatgcagctgaaccccctgggttcttaaaattacacctacaaatctttccaatttcaactttgaatcccctg 42654665  T
Q  317 aaaaattaaatttgcacccttatcacaaagattgtttcacttctgcacctctactttctcttttttacagatttgaata-ttggttgtatctctttagtt 415  Q
    |||| || |  |||||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  42654666 aaaatttgaggttgcacccttatcttgaagattgtttcacttctgcacctctactttctcttttttacaaatttaaatatttgattgtatctctttagtt 42654765  T
Q  416 ttc 418  Q
    |||    
T  42654766 ttc 42654768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 217 - 418
Target Start/End: Original strand, 36389365 - 36389567
Alignment:
Q  217 cattggcggagctacatgcatctcaggggatgcagctgaaccccttgggttcttaaatttacacctacaaatctttttaatttcaactttaaatcccttc 316  Q
    ||||||||||||| |||||| || ||||||||||||| |||||| |||||||||||| ||||||| |||||||||| |||||||||||||||||||| |     
T  36389365 cattggcggagctgcatgcaccttaggggatgcagctcaaccccatgggttcttaaaattacaccaacaaatctttctaatttcaactttaaatcccctg 36389464  T
Q  317 aaaaattaaatttgcacccttatcacaaagattgtttcacttctgcacctctactttctcttttttacagatttgaata-ttggttgtatctctttagtt 415  Q
    |||| |||| ||||||| |||||| ||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  36389465 aaaatttaagtttgcactcttatctcaaagattgtttctcttatgcacctctagtttttcttttttacagatttgaatatttggttgtacctctttagtt 36389564  T
Q  416 ttc 418  Q
    |||    
T  36389565 ttc 36389567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 734702 - 734799
Alignment:
Q  116 tactagtgtatttacctggcattgctcagattatacatataaatatggataaccaaaacattttatgcatgtattggcaaataaaatataacacggaca 214  Q
    ||||||||||||||||  || ||| || |||||||||||||| || ||| ||||||||  || |||||||||||  |||||||||||||| ||||||||    
T  734702 tactagtgtatttacccagcgttg-tccgattatacatataattaaggaaaaccaaaattttgtatgcatgtatctgcaaataaaatataccacggaca 734799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 216 - 418
Target Start/End: Complemental strand, 30880866 - 30880663
Alignment:
Q  216 acattggcggagctacatgcatctcaggggatgcagctgaaccccttgggttcttaaatttacacctacaaatctttttaatttcaactttaaatccctt 315  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| | |||||||||| ||||||||||||||||||  |||||||||||| |||  | |    
T  30880866 acattggcggagctacatgcatctcaggggacgtagctgaaccccctaggttcttaaaattacacctacaaatctttccaatttcaactttgaatttcct 30880767  T
Q  316 caaaaattaaatttgcacccttatcacaaagattgtttcacttctgcacctctactttctcttttttacagatttgaata-ttggttgtatctctttagt 414  Q
     |||| || | ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||    
T  30880766 gaaaatttgagtttgcacccttatcttaaagactgtttcacttctgcacctctactttctcttttttacagatttaaatatttgattatatctctttagt 30880667  T
Q  415 tttc 418  Q
    ||||    
T  30880666 tttc 30880663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 39623814 - 39623673
Alignment:
Q  217 cattggcggagctacatgcatctcaggggatgcagctgaaccccttgggttcttaaatttacacctacaaatctttttaatttcaactttaaatcccttc 316  Q
    ||||||||||||||||   | || ||| |||||||||||||||| |||||||||||| |||||||||| ||||| |  || ||||| ||| |||||| |     
T  39623814 cattggcggagctacacaaaccttaggtgatgcagctgaaccccctgggttcttaaaattacacctactaatctatccaaattcaattttgaatcccct- 39623716  T
Q  317 aaaaattaaatttgcacccttatcacaaagattgtttcacttc 359  Q
     |||||||| |||||||||||||| ||||||||| ||||||||    
T  39623715 gaaaattaagtttgcacccttatctcaaagattgattcacttc 39623673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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