View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0682_low_13 (Length: 423)
Name: NF0682_low_13
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0682_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 35 - 287
Target Start/End: Complemental strand, 42230882 - 42230633
Alignment:
| Q |
35 |
atatcctccaccaccaggatatccaccgtaaccgggtacatcttcttggaatagttttctccctgcaccatatataaaattaagtcaatgatttaatgaa |
134 |
Q |
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| T |
42230882 |
atatcctccaccaccaggatatccaccataagcgggtacatcttcttggaatagttttctccctgcaccatatataaaattaagtcaatgatttaatgaa |
42230783 |
T |
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| Q |
135 |
acaagaagagnnnnnnntaaaccaaagagagtatcatataaaacgtggattcatttatagaaatcatcaatgatcatcagcctcatattcaaaataggga |
234 |
Q |
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| T |
42230782 |
acaagaagaggaaaaaataaaccaaagagagtatcatataaaacatggattcatttatagaaatcatcaatg---atcagcctcatattcaaaataggga |
42230686 |
T |
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| Q |
235 |
catgattacaagaagtctcgaatatgcatatatgtatattgttatattttgaa |
287 |
Q |
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| T |
42230685 |
catgattacaagaagtctcgaatatgcatatatgtatattgttatattttgaa |
42230633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 42229670 - 42229603
Alignment:
| Q |
341 |
gttaaaatagattaggtaaaaagtacacacaatcaaattagtcacttattttagaatggatagagtat |
408 |
Q |
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| T |
42229670 |
gttaaaataggttaggtaaaaagtacacacaatcaaattagtcacttattttagaatggatagagtat |
42229603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 42230564 - 42230502
Alignment:
| Q |
286 |
aaaaatccaacaaccacatatcccacttatctttattaattagtagaaaaatagggttaaaat |
348 |
Q |
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| T |
42230564 |
aaaaatccaacaaccacatatcccacttatctttattaattagtagaaaaatatggttaaaat |
42230502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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