View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0682_low_15 (Length: 403)
Name: NF0682_low_15
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0682_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 94 - 395
Target Start/End: Original strand, 8570081 - 8570381
Alignment:
| Q |
94 |
aaaatttgggaagattataaatggaatataatatattgtttctgtttgcttatgagaaagaatgtgacctcgagtaggggtcatttatagttcaacatca |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8570081 |
aaaatttgggaagattataaatggaatataatatattgtttctgtttgcttatgagaaagaatgtgacctcgagtaggggtcatttatagttcaacatca |
8570180 |
T |
|
| Q |
194 |
ataattaatgaaagcaatcgaacaataaaagaagaagcagacaaggtagctgcttttttgatcatattcttctaataaaggctaattaagtaagtattat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8570181 |
ataattaatgaaagcaatcgaacaataaaagaagaagcagacaaggtagctgcttttttgatcatattcttctaataaaggctaattaagtaagtaata- |
8570279 |
T |
|
| Q |
294 |
ttgattcatgtggtagctaagtaagtcatcaaaggggtcgagtatgtcttccagttgccctaccacaaagtaatgcattcttaggaatagggtattcatc |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8570280 |
ttgattcatgtggtagctaagtaagtcatcaaaggggtcgagtatgtcttccagttgccctaccacaaagtaatgcattcttaggaatagggtattcatc |
8570379 |
T |
|
| Q |
394 |
tc |
395 |
Q |
| |
|
|| |
|
|
| T |
8570380 |
tc |
8570381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 53748445 - 53748507
Alignment:
| Q |
322 |
tcaaaggggtcgagtatgtcttccagttgccctaccacaaagtaatgcattcttaggaatagg |
384 |
Q |
| |
|
||||||||| || |||||||| ||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
53748445 |
tcaaagggggcgggtatgtctcccacttgccctaccacaaagacgtgcattctttggaatagg |
53748507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 230 times since January 2019
Visitors: 4374