View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0682_low_32 (Length: 297)

Name: NF0682_low_32
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0682_low_32
NF0682_low_32
[»] chr1 (22 HSPs)
chr1 (57-236)||(50342921-50343100)
chr1 (56-238)||(52803095-52803277)
chr1 (72-236)||(47503249-47503413)
chr1 (56-236)||(38126434-38126614)
chr1 (73-236)||(21141819-21141982)
chr1 (56-236)||(47656810-47656990)
chr1 (56-236)||(45825841-45826020)
chr1 (56-157)||(96865-96966)
chr1 (56-157)||(19524118-19524219)
chr1 (68-157)||(22525247-22525336)
chr1 (73-157)||(51321751-51321835)
chr1 (56-162)||(23275072-23275178)
chr1 (75-157)||(19157063-19157145)
chr1 (76-157)||(49856914-49856995)
chr1 (68-157)||(31782670-31782753)
chr1 (176-236)||(23275171-23275231)
chr1 (86-157)||(35257845-35257916)
chr1 (75-157)||(13638948-13639030)
chr1 (75-156)||(2366158-2366239)
chr1 (82-157)||(26876706-26876781)
chr1 (75-157)||(30891028-30891110)
chr1 (82-157)||(3731315-3731390)
[»] chr7 (26 HSPs)
chr7 (56-236)||(47777215-47777395)
chr7 (56-236)||(37341269-37341449)
chr7 (56-236)||(19798237-19798417)
chr7 (76-236)||(27452567-27452727)
chr7 (56-236)||(16677993-16678172)
chr7 (56-236)||(17652229-17652408)
chr7 (56-232)||(39461426-39461603)
chr7 (56-157)||(46739439-46739540)
chr7 (56-157)||(34739410-34739511)
chr7 (56-159)||(17836121-17836224)
chr7 (76-194)||(5540532-5540650)
chr7 (58-179)||(11635583-11635704)
chr7 (73-157)||(47672064-47672148)
chr7 (60-176)||(11635784-11635900)
chr7 (73-157)||(9493747-9493831)
chr7 (75-157)||(15073212-15073294)
chr7 (75-157)||(42507021-42507103)
chr7 (73-157)||(36978625-36978709)
chr7 (75-157)||(17462232-17462314)
chr7 (75-157)||(17590900-17590982)
chr7 (82-157)||(9370324-9370399)
chr7 (82-157)||(35609360-35609435)
chr7 (82-157)||(41881554-41881629)
chr7 (82-157)||(48404421-48404496)
chr7 (168-210)||(34739342-34739384)
chr7 (168-210)||(47672174-47672216)
[»] chr8 (26 HSPs)
chr8 (73-236)||(39845943-39846106)
chr8 (56-236)||(35552607-35552787)
chr8 (56-236)||(5303168-5303348)
chr8 (56-236)||(43189012-43189192)
chr8 (56-236)||(34821944-34822124)
chr8 (56-236)||(40076185-40076365)
chr8 (56-157)||(34369478-34369579)
chr8 (56-157)||(34370806-34370907)
chr8 (56-157)||(39253046-39253147)
chr8 (72-212)||(37327808-37327946)
chr8 (68-157)||(39602634-39602723)
chr8 (56-157)||(39938144-39938245)
chr8 (60-157)||(41249055-41249152)
chr8 (56-157)||(43212552-43212653)
chr8 (76-211)||(2985097-2985228)
chr8 (75-159)||(15035672-15035756)
chr8 (75-157)||(45065238-45065320)
chr8 (133-207)||(45128711-45128785)
chr8 (133-213)||(5678021-5678098)
chr8 (56-157)||(42484508-42484609)
chr8 (172-236)||(20858227-20858291)
chr8 (82-157)||(24472-24547)
chr8 (82-157)||(488653-488728)
chr8 (82-157)||(1053588-1053663)
chr8 (82-157)||(23021255-23021330)
chr8 (82-157)||(26660510-26660585)
[»] chr4 (29 HSPs)
chr4 (56-236)||(50194420-50194600)
chr4 (56-236)||(50022543-50022723)
chr4 (56-236)||(51684166-51684346)
chr4 (56-236)||(30704965-30705145)
chr4 (56-211)||(50902445-50902600)
chr4 (76-211)||(46437176-46437313)
chr4 (56-157)||(44678983-44679084)
chr4 (58-157)||(50275762-50275861)
chr4 (56-157)||(21021814-21021915)
chr4 (56-157)||(37021004-37021104)
chr4 (56-182)||(55406344-55406470)
chr4 (133-211)||(10752448-10752526)
chr4 (133-211)||(10966217-10966295)
chr4 (103-211)||(11083002-11083107)
chr4 (75-157)||(30725736-30725818)
chr4 (109-210)||(21537466-21537564)
chr4 (75-157)||(41797922-41798004)
chr4 (82-157)||(1308105-1308180)
chr4 (82-157)||(6180724-6180799)
chr4 (82-157)||(31422752-31422827)
chr4 (133-212)||(41932652-41932731)
chr4 (82-157)||(49091484-49091559)
chr4 (82-157)||(49166079-49166154)
chr4 (119-203)||(11049559-11049640)
chr4 (82-155)||(40357232-40357305)
chr4 (177-236)||(55406837-55406896)
chr4 (145-187)||(10752017-10752059)
chr4 (145-187)||(10965786-10965828)
chr4 (168-209)||(1308206-1308247)
[»] chr3 (34 HSPs)
chr3 (56-232)||(41613302-41613478)
chr3 (56-236)||(49195394-49195574)
chr3 (56-236)||(44230666-44230846)
chr3 (58-236)||(20351569-20351747)
chr3 (56-236)||(17567024-17567204)
chr3 (56-236)||(20916945-20917125)
chr3 (56-236)||(20925907-20926087)
chr3 (60-236)||(48563895-48564071)
chr3 (56-236)||(42757116-42757295)
chr3 (118-236)||(49268259-49268377)
chr3 (56-157)||(47073132-47073233)
chr3 (56-157)||(52390314-52390415)
chr3 (56-157)||(16612111-16612212)
chr3 (56-157)||(22047041-22047142)
chr3 (58-157)||(3976753-3976852)
chr3 (58-157)||(4007276-4007376)
chr3 (73-157)||(48889743-48889827)
chr3 (56-155)||(50997045-50997144)
chr3 (68-157)||(597929-598018)
chr3 (56-157)||(36128644-36128744)
chr3 (56-157)||(50215864-50215963)
chr3 (73-157)||(30254945-30255029)
chr3 (75-157)||(29009923-29010005)
chr3 (68-157)||(2273861-2273950)
chr3 (82-159)||(46390012-46390089)
chr3 (82-157)||(34046439-34046514)
chr3 (82-157)||(42903124-42903199)
chr3 (82-157)||(49143397-49143472)
chr3 (82-157)||(50479741-50479816)
chr3 (82-157)||(54387187-54387262)
chr3 (82-157)||(46700960-46701035)
chr3 (99-211)||(8731753-8731861)
chr3 (99-211)||(9083640-9083748)
chr3 (169-211)||(30255056-30255098)
[»] chr2 (14 HSPs)
chr2 (56-238)||(39948563-39948745)
chr2 (57-236)||(36655320-36655499)
chr2 (56-157)||(10827946-10828047)
chr2 (56-155)||(7187817-7187916)
chr2 (56-157)||(29400492-29400593)
chr2 (75-157)||(17421575-17421657)
chr2 (75-157)||(15832181-15832263)
chr2 (75-157)||(45429637-45429719)
chr2 (82-157)||(5353018-5353093)
chr2 (82-157)||(20931622-20931697)
chr2 (82-157)||(30495881-30495956)
chr2 (82-157)||(43538672-43538747)
chr2 (82-157)||(3939674-3939749)
chr2 (82-157)||(43979583-43979658)
[»] chr6 (9 HSPs)
chr6 (56-232)||(6319492-6319668)
chr6 (84-236)||(24722834-24722986)
chr6 (76-160)||(24087698-24087782)
chr6 (75-157)||(27617779-27617861)
chr6 (82-157)||(6202212-6202287)
chr6 (82-157)||(11689179-11689254)
chr6 (82-157)||(22302244-22302319)
chr6 (82-157)||(30828586-30828661)
chr6 (167-210)||(21601433-21601476)
[»] scaffold0238 (1 HSPs)
scaffold0238 (56-234)||(17884-18062)
[»] chr5 (16 HSPs)
chr5 (56-236)||(5197904-5198084)
chr5 (56-213)||(40623849-40624006)
chr5 (56-157)||(7758352-7758453)
chr5 (56-157)||(42941412-42941513)
chr5 (71-201)||(8701176-8701306)
chr5 (71-211)||(38969076-38969213)
chr5 (141-236)||(42538113-42538208)
chr5 (56-209)||(13740-13890)
chr5 (75-157)||(8579450-8579532)
chr5 (75-157)||(19040044-19040126)
chr5 (79-157)||(19227895-19227973)
chr5 (75-157)||(27672596-27672678)
chr5 (75-157)||(30706149-30706231)
chr5 (75-157)||(28240767-28240849)
chr5 (76-157)||(28877687-28877768)
chr5 (169-209)||(27672705-27672745)
[»] scaffold0180 (1 HSPs)
scaffold0180 (112-157)||(14603-14648)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 50342921 - 50343100
Alignment:
Q  57 atcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcc 156  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| || |||||||||||||| || ||| |||||||||||||||||    
T  50342921 atcatcatctcctacatgctgctgctctggtatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctggtcctgataattcaggtactcc 50343020  T
Q  157 atctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  50343021 atctgctggctcggatcaaccacctgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaaccatc 50343100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 52803277 - 52803095
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  52803277 catcatcatctaccacatgctgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 52803178  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatctc 238  Q
    |  ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| | | ||||||||||||||||||||    
T  52803177 ctcctgctggctcgggtcaaccacatgcgactcttcaggctgtgtagcttgagaagcctcatgcgaactccctgaaccatctc 52803095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 47503413 - 47503249
Alignment:
Q  72 atgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcggg 171  Q
    |||||| || |||||||||||||||||||||||||| ||||| || |||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  47503413 atgctgttgatgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacctgatcctgataattcaggtactccacctgctggctcggg 47503314  T
Q  172 tcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    ||||||||||||||||||||| | |||  ||||||||||||| ||| ||||||||||||||||||    
T  47503313 tcaaccacctgcgactcttcatgctgttgagcctgagaagcctcctgcgaactccctgaaccatc 47503249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 38126434 - 38126614
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||  |||||||||||||||    
T  38126434 catcatcatctactatatgttgctgctctggtatatgatcctggtcatacccaccatcagtcacatcgttgtgtacctgatcctaataattcaggtactc 38126533  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || || ||||||||| ||||||||||||||||||||||| |||||||  ||| || || |||||||| |||||||||||||    
T  38126534 cacctcctggctcggatcaaccacctgcgactcttcaggctgtgtagtatgaaaatcctcctacgaagtccctgaaccatc 38126614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 21141982 - 21141819
Alignment:
Q  73 tgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggt 172  Q
    |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||  ||||| |||||||||||||||||| ||| |||||||| |    
T  21141982 tgctgctgttgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacccgatcctgataattcaggtactccacctgatggctcggat 21141883  T
Q  173 caaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
     ||||||||||||||||||||| |||||||| ||||||||| |||  |||||||||||||||||    
T  21141882 taaccacctgcgactcttcaggttgtgtagcatgagaagcctcctgtgaactccctgaaccatc 21141819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 47656990 - 47656810
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||| ||| || |||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  47656990 catcatcgtctgctatatgttgttgctctggtatatgatcatggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaagtactc 47656891  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || ||  |||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||| |||| |||||||| ||||    
T  47656890 cacctcttggctcggatcaaccacctgcgactcttcaggctgtgtagtctgagaagcctcctgcgaagtccctgaatcatc 47656810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 45826020 - 45825841
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    |||||||||||  || ||| ||||||| ||||||||||||||||||||| |  ||||| || |||||||||||||| |||||| ||||||||||||||||    
T  45826020 catcatcatctattatatgttgctgctttggtatatgatcctggtcatatca-ccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 45825922  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || || ||||||||| |||||||| |||||||||| ||| ||||||||||||||| || ||| |||| |||||||||||||    
T  45825921 cacctcctggctcggatcaaccacatgcgactcttaaggttgtgtagcctgagaaacctcctgcgaagtccctgaaccatc 45825841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 96865 - 96966
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  96865 catcatcgtctcctacatgctgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 96964  T
Q  156 ca 157  Q
    ||    
T  96965 ca 96966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 19524118 - 19524219
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  19524118 catcatcatctcctacatgctgctattgtggtatatgatcttggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataatttaggtactc 19524217  T
Q  156 ca 157  Q
    ||    
T  19524218 ca 19524219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 22525336 - 22525247
Alignment:
Q  68 ctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||| |||||||||||||    
T  22525336 ctacatgctgctgctgtggtatatgatcctggtcatacccaccatcagtcccatcgtggtgtacctgatcctgatagttcaggtactcca 22525247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 51321835 - 51321751
Alignment:
Q  73 tgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  51321835 tgctgctgctctggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactcca 51321751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 23275072 - 23275178
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||| ||||||||||| ||||||||||||||| |||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||    
T  23275072 catcatcgtctgctatatgctgctgctctggtatatgatcctgatcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 23275171  T
Q  156 catctgc 162  Q
    || ||||    
T  23275172 cacctgc 23275178  T

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Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 19157145 - 19157063
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||||| |||| |||||||||||||    
T  19157145 ctgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgctgtacctgatcctgatagttcaggtactcca 19157063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 49856914 - 49856995
Alignment:
Q  76 tgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||| |||||||||||| ||||||||||  ||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  49856914 tgctgctctggtatatgatcttggtcatacctaccaccagtcacatcgtggtgtacttgatcctgataattctggtactcca 49856995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 31782670 - 31782753
Alignment:
Q  68 ctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||      ||||||| |||||| ||||||||||||||||||    
T  31782670 ctacatgctgctgctgtggtatatgatcctggtcatatccaccatcagtca------ggtgtacctgatcctgataattcaggtactcca 31782753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 23275171 - 23275231
Alignment:
Q  176 ccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  23275171 ccacctgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaaccatc 23275231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 35257845 - 35257916
Alignment:
Q  86 gtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||| ||| || ||||||||||||||||||    
T  35257845 gtatatgatcccggtcatactcaccatcagtcacatcgtggtgtacctgagcctgataattcaggtactcca 35257916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 13638948 - 13639030
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| ||  |||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  13638948 ctgctgctgtggtatatgatcctggtcatatccatcatccgtcacatcatgttgtacctgatcctgatagttcaggtactcca 13639030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 2366239 - 2366158
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcc 156  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||  |||| ||||||||||||    
T  2366239 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgttgtacctgatcttgatagttcaggtactcc 2366158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 26876781 - 26876706
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  26876781 tgtggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 26876706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 30891110 - 30891028
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||| |||||||||||||| |||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  30891110 ctgctgatgtggtatatgatcatggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactcca 30891028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 3731315 - 3731390
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  3731315 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 3731390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 47777395 - 47777215
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||||| ||||||||| |||||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||    
T  47777395 catcatcatctgctatatgctactgctgtggcatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 47777296  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||||||    
T  47777295 cacctgctggctcgggtcaaccacctgcgactcttcaggctgtgtagcctgagcagcctcctgcgaactccctgaaccatc 47777215  T

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Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 37341449 - 37341269
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||| | ||| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  37341449 catcatcatatgctatatgctgctactctggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 37341350  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || || ||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||| |||| |||||||||||||    
T  37341349 cacctcctggctcggatcaaccacctgcgactctttaggctgtgtagcctgagaagcctcctgcgaagtccctgaaccatc 37341269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 19798417 - 19798237
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    |||| |||||| ||||||| ||||||| | ||||||||||||||||||||||  |||| || ||||||||||||||||||||| |||||| ||||||||     
T  19798417 catcttcatctcctacatgttgctgctctagtatatgatcctggtcatacccatcatccgtaacatcgtggtgtacttgatcctgataatccaggtactg 19798318  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  19798317 cacctgctggctcggatcaaccacctgcgactcttcaggctgtgtagcctgagaagcctccttcgaactccctgaaccatc 19798237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 76 - 236
Target Start/End: Original strand, 27452567 - 27452727
Alignment:
Q  76 tgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaa 175  Q
    |||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||| |||||||||||| ||||| |||||||||| ||||||    
T  27452567 tgctgctgtggtatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtgctccacctgctggctcaggtcaa 27452666  T
Q  176 ccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    |||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  27452667 ccacgtgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaaccatc 27452727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 16678172 - 16677993
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||| |||| || |||||||||||||||||||||||| ||||| || |||| ||||||||| |||||| ||||||||||||||||    
T  16678172 catcatcatctgctatatgttgctcctctggtatatgatcctggtcatacccaccatctgtaacattgtggtgtacctgatcctgataattcaggtactc 16678073  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||    
T  16678072 cacctgctggctcggatcaaccacctgcgactcttca-gttgtgtagcctgagaagcctcctgcgaactccctgaaccatc 16677993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 17652408 - 17652229
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||| |||| || |||||||||||||||||||||||| ||||| || |||| ||||||||| |||||| ||||||||||||||||    
T  17652408 catcatcatctgctatatgttgctcctctggtatatgatcctggtcatacccaccatctgtaacattgtggtgtacctgatcctgataattcaggtactc 17652309  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||    
T  17652308 cacctgctggctcggatcaaccacctgcgactcttca-gttgtgtagcctgagaagcctcctgcgaactccctgaaccatc 17652229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 39461603 - 39461426
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccct-ccatcagtcacatcgtggtgtacttgatccagataattcaggtact 154  Q
    ||||||||||| ||| ||| || || | ||||||||||||||||||||||||  ||||  || ||||||||||||||||||||| |||||||||||||||    
T  39461603 catcatcatctgctatatgttgttgatctggtatatgatcctggtcataccccaccattcgtaacatcgtggtgtacttgatcctgataattcaggtact 39461504  T
Q  155 ccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaac 232  Q
    ||| |||||||||| | ||||||||||| | ||||||||| | ||||||||||| |||| | | ||||||||||||||    
T  39461503 ccacctgctggctcagatcaaccacctggggctcttcaggctatgtagcctgagcagcctcatgcgaactccctgaac 39461426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 46739439 - 46739540
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  46739439 catcatcgtctcttacatgctgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 46739538  T
Q  156 ca 157  Q
    ||    
T  46739539 ca 46739540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 34739511 - 34739410
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || ||||||||    
T  34739511 catcatcatctcctacatgctgctgttgtggtatgtgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgatattttaggtactc 34739412  T
Q  156 ca 157  Q
    ||    
T  34739411 ca 34739410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 17836224 - 17836121
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  17836224 catcatcgtctcctacatgttgctgttgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcatgtactc 17836125  T
Q  156 catc 159  Q
    ||||    
T  17836124 catc 17836121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 5540532 - 5540650
Alignment:
Q  76 tgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaa 175  Q
    ||||| |||||||||| || |||||||||||| || || || ||||||||||||||||||||| |||||||||||||||||| ||  |||||||| ||||    
T  5540532 tgctgttgtggtatatcattctggtcatacccaccctccgtaacatcgtggtgtacttgatcctgataattcaggtactccacctattggctcggatcaa 5540631  T
Q  176 ccacctgcgactcttcagg 194  Q
    ||||||| |||||||||||    
T  5540632 ccacctgtgactcttcagg 5540650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 11635583 - 11635704
Alignment:
Q  58 tcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||| ||| ||| |||| || |||||||||||| ||||||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||||    
T  11635583 tcatcatctgctatatgttgctactctggtatatgatcttggtcatacccaccatcggttacatcgtggtgtacctgatcctgataattcaggtactcca 11635682  T
Q  158 tctgctggctcgggtcaaccac 179  Q
     |||||| ||| | ||||||||    
T  11635683 cctgctgactcagatcaaccac 11635704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 47672064 - 47672148
Alignment:
Q  73 tgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  47672064 tgctgctgctttggtatatgattctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattctggtactcca 47672148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 11635900 - 11635784
Alignment:
Q  60 atcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatc 159  Q
    ||||||| ||| ||| |||| || | ||||||||| ||||||||| || ||||| || |||||||||||||| |||||| |||||||||||||||||| |    
T  11635900 atcatctgctatatgttgctactctagtatatgatgctggtcatatccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactccacc 11635801  T
Q  160 tgctggctcgggtcaac 176  Q
    ||||||||||| |||||    
T  11635800 tgctggctcggatcaac 11635784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 9493747 - 9493831
Alignment:
Q  73 tgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||| ||||| ||||||||||||||||||||| || ||||||||||||| ||| ||||| |||||| ||||||||||||||||||    
T  9493747 tgctactgctctggtatatgatcctggtcatatccaccatcagtcacattgtgctgtacctgatcctgataattcaggtactcca 9493831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 15073212 - 15073294
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  15073212 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactcca 15073294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 42507021 - 42507103
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  42507021 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactcca 42507103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 36978709 - 36978625
Alignment:
Q  73 tgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||| || || ||||||||| ||||||||||| |||||| |||||||||||||||| | |||| ||||||||||||||||||    
T  36978709 tgctgcttctctgatatatgatcttggtcatacccaccatcaatcacatcgtggtgtacctaatcctgataattcaggtactcca 36978625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 17462232 - 17462314
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||| ||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  17462232 ctgctgatgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactcca 17462314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 17590982 - 17590900
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||| ||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  17590982 ctgctgatgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactcca 17590900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 9370324 - 9370399
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  9370324 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 9370399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 35609360 - 35609435
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  35609360 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 35609435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 41881629 - 41881554
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  41881629 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 41881554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 48404496 - 48404421
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  48404496 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 48404421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 34739384 - 34739342
Alignment:
Q  168 cgggtcaaccacctgcgactcttcagggtgtgtagcctgagaa 210  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||    
T  34739384 cgggtcaacaacctgtgactcttcaggctgtgtagcctgagaa 34739342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 47672174 - 47672216
Alignment:
Q  168 cgggtcaaccacctgcgactcttcagggtgtgtagcctgagaa 210  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||    
T  47672174 cgggtcaacaacctgtgactcttcaggctgtgtagcctgagaa 47672216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 39845943 - 39846106
Alignment:
Q  73 tgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggt 172  Q
    ||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  39845943 tgctgctgctgtggtatatgatcttggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactccacctgctggctcgggt 39846042  T
Q  173 caaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  39846043 caaccacctgcgactcttcaggttgtgtagcctgagaagcctcctgcgaactccctgaaccatc 39846106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 35552787 - 35552607
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||| ||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  35552787 catcatcatctgctatatgatgctgctctgatatatgatcctggtcatacccaccaccagtcacatcgtggtgtacctgatcctgataattcaggtactc 35552688  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || || ||||||||  |||||||| |||||||||||||| |||||||||||||||||| | | |||| |||||||||||||    
T  35552687 cacctcctggctcgaatcaaccacatgcgactcttcaggctgtgtagcctgagaagcctcgtgcgaagtccctgaaccatc 35552607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 5303168 - 5303348
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||| || |||| ||| |||||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||    
T  5303168 catcatcatctgctatatgttgatgctctggcatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 5303267  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    |  |||||||||||  ||||||||||||||||||||||| ||||||| |||||||||| | | ||||||||||||||||||    
T  5303268 cccctgctggctcgaatcaaccacctgcgactcttcaggctgtgtagtctgagaagcctcttgcgaactccctgaaccatc 5303348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 43189192 - 43189012
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||||||| ||||||| || ||||||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||    
T  43189192 catcatcatctcctacatgttgctgctctgatatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 43189093  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
     |  ||||||||||| |||| ||||| |||||||||| | |||||||||||||||||| ||| |||| ||| |||||||||    
T  43189092 tacttgctggctcggatcaatcacctacgactcttcaagctgtgtagcctgagaagcctcctgcgaattccatgaaccatc 43189012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 34821944 - 34822124
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    |||||||||||  || ||| |||| || |||||||||||| ||||||||||| ||||||||||||| ||||||||| | |||| ||||||||||||||||    
T  34821944 catcatcatctgttatatgttgctactctggtatatgatcatggtcatacccaccatcagtcacattgtggtgtacctaatcctgataattcaggtactc 34822043  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || || |||||| || | ||||||||||||||||||||| |||||||||| ||||||| ||| |||| |||||||||||||    
T  34822044 cacctcctggcttggatgaaccacctgcgactcttcaggctgtgtagcctaagaagcctcctgcgaagtccctgaaccatc 34822124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 40076185 - 40076365
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    |||||||||||  || ||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||    
T  40076185 catcatcatctgttatatgttgctgctctggtatatgatcctggtcatacccactatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 40076284  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || || ||| ||||| || ||||| ||||| ||||| |  |||||||||||||||||| ||| |||| |||||||||||||    
T  40076285 cacctcctgactcggatcgaccacttgcgaatcttctgactgtgtagcctgagaagcctcctgcgaagtccctgaaccatc 40076365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 34369478 - 34369579
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  34369478 catcatcgtctcctacatgctgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 34369577  T
Q  156 ca 157  Q
    ||    
T  34369578 ca 34369579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 34370806 - 34370907
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  34370806 catcatcgtctcctacatgctgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 34370905  T
Q  156 ca 157  Q
    ||    
T  34370906 ca 34370907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 39253147 - 39253046
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  39253147 catcatcatctcctacatgctgctgttgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 39253048  T
Q  156 ca 157  Q
    ||    
T  39253047 ca 39253046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 37327946 - 37327808
Alignment:
Q  72 atgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcggg 171  Q
    ||||||||||| | ||||||||||||| ||||||||  |||||||||||||||||||||| |||||| |||||||||  ||||||| || |||| |||||    
T  37327946 atgctgctgctctagtatatgatcctgatcataccc--catcagtcacatcgtggtgtacctgatcctgataattcaaatactccacctcctgggtcggg 37327849  T
Q  172 tcaaccacctgcgactcttcagggtgtgtagcctgagaagc 212  Q
    | |||||| |||||||||||||| |||||||| ||||||||    
T  37327848 ttaaccacatgcgactcttcaggctgtgtagcttgagaagc 37327808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 39602723 - 39602634
Alignment:
Q  68 ctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  39602723 ctacatgctgctgttgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactcca 39602634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 39938144 - 39938245
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  39938144 catcatcgtctcctacatgttgctgttgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 39938243  T
Q  156 ca 157  Q
    ||    
T  39938244 ca 39938245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 41249055 - 41249152
Alignment:
Q  60 atcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  41249055 atcatctcctacatgttgctgctgtggtatatgatcctggtcatacccaccatcagtcatatcgtggtgtacctgatcctgataattcaggtactcca 41249152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 43212653 - 43212552
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||||| ||||||||||||||||    
T  43212653 catcatcgtctcctacatgttgctgctgtggtatatgatcctggtcatatccaccatcagtcgcatcgtggtgtacctgatcctgataattcaggtactc 43212554  T
Q  156 ca 157  Q
    ||    
T  43212553 ca 43212552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 2985228 - 2985097
Alignment:
Q  76 tgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaa 175  Q
    ||||||| ||||||||| | |||||||||||| |||||||| |||||||||||||| | |||| ||||||||||||||||   || |||| |||||||||    
T  2985228 tgctgctctggtatatgttgctggtcatacccaccatcagtgacatcgtggtgtacctaatcctgataattcaggtactc---ctcctgggtcgggtcaa 2985132  T
Q  176 ccacctgcgactcttcagggtgtgtagcctgagaag 211  Q
    ||||||| |||| |||||| |||||||||| |||||    
T  2985131 ccacctgtgact-ttcaggctgtgtagcctaagaag 2985097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 15035672 - 15035756
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatc 159  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||||| |||| |||||||||||||||    
T  15035672 ctgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgctgtacctgatcctgatagttcaggtactccatc 15035756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 45065320 - 45065238
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||||| |||| |||||||||||||    
T  45065320 ctgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgctgtacctgatcctgatagttcaggtactcca 45065238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 45128785 - 45128711
Alignment:
Q  133 tgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctga 207  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  45128785 tgatcctgataattcaggtactccacctcctggctcgggtcaaccacctgcgactcttcaggctgtctagcctga 45128711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 5678098 - 5678021
Alignment:
Q  133 tgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagcc 213  Q
    |||||| |||||||||||||||||| |||   |||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  5678098 tgatcctgataattcaggtactccacctg---gctcgggtcaaccacctgtgactcttcaggctgtgtagcctgagaagcc 5678021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 42484508 - 42484609
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| || ||| |||||  ||||||||||||||||||||||| || ||||| |||||||| || |||||||||||| |||| |||||||||||    
T  42484508 catcatcgtctcctgcatcctgctaatgtggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacttgatcctgatagttcaggtactc 42484607  T
Q  156 ca 157  Q
    ||    
T  42484608 ca 42484609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 20858291 - 20858227
Alignment:
Q  172 tcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    ||||||||||||||||||||||| |||||||| ||||||||| |||  |||||||||||||||||    
T  20858291 tcaaccacctgcgactcttcaggctgtgtagcttgagaagcctcctgtgaactccctgaaccatc 20858227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 24472 - 24547
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  24472 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 24547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 488653 - 488728
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  488653 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 488728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 1053663 - 1053588
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  1053663 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 1053588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 23021255 - 23021330
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  23021255 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 23021330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 26660585 - 26660510
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  26660585 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 26660510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 50194600 - 50194420
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||||||| ||||||| |||||||||||| | ||||||||| ||||| || ||||||| ||||||||||||| ||||||||||||||||    
T  50194600 catcatcatctcctacatgttgctgctctggtatatgatcttagtcatacccaccatccgtaacatcgtagtgtacttgatcctgataattcaggtactc 50194501  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  50194500 cacctgctggctcggatcaaccacctgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaaccatc 50194420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 50022543 - 50022723
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||||||| | |||||  | |||||||||||||| |||||| ||||||||||||||||    
T  50022543 catcatcatctgctatatgctgctgctctggtatatgatcctggtcatactcaccatccataacatcgtggtgtacctgatcctgataattcaggtactc 50022642  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||| |||||||||||||||||||| || |||||||| ||||||||| ||| ||||||||||||||||||    
T  50022643 cacctgctggctcggatcaaccacctgcgactcttcgggctgtgtagcttgagaagcctcctgcgaactccctgaaccatc 50022723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 51684346 - 51684166
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    |||||||||||  || ||| ||||||| |||||||||||||||||||||| | ||||| || |||||||||||||| |||||| ||||||| ||||||||    
T  51684346 catcatcatctattatatgttgctgctctggtatatgatcctggtcatactcaccatccgtaacatcgtggtgtacctgatcctgataatttaggtactc 51684247  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||    
T  51684246 cacctgctggctcggatcaaccacctgcgactctttaggctgtgtagcctgagaagcctcctacgaactccctgaaccatc 51684166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 30705145 - 30704965
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||| ||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||  |||||||||||||||    
T  30705145 catcatcatctgctatatgttgctgctctggtatatgatcctggtcatacccaccatcagtcccattgtggtgtacctgatcctaataattcaggtactc 30705046  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || || ||||||||| |||||||||||||||| |||||| |||||||||||| ||||| ||| |||| |||||||||||||    
T  30705045 cacctcctggctcggatcaaccacctgcgacttttcaggctgtgtagcctgataagcctcctgcgaagtccctgaaccatc 30704965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 50902600 - 50902445
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||    
T  50902600 catcatcatctcctatatgctgctgttgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacctgatcctgataattcaggtactc 50902501  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaag 211  Q
    || ||  |||  ||||||||| || || ||||||||||| |||||| |||||||||    
T  50902500 cacctagtgggacgggtcaacaacttgtgactcttcaggctgtgtatcctgagaag 50902445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 46437313 - 46437176
Alignment:
Q  76 tgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctgg--ctcgggtc 173  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| || ||||  |||||||     
T  46437313 tgctgctctggtatatgatcctggtcatacccaccatcagtcacttcgtggtgtacctgatcctgataattcaggtactccaccttctgggtctcgggtt 46437214  T
Q  174 aaccacctgcgactcttcagggtgtgtagcctgagaag 211  Q
    |||||| |||||||||||||| | |||||||| |||||    
T  46437213 aaccacttgcgactcttcaggctatgtagcctaagaag 46437176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 44678983 - 44679084
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  44678983 catcatcgtctcctacatgctgctactgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 44679082  T
Q  156 ca 157  Q
    ||    
T  44679083 ca 44679084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 50275861 - 50275762
Alignment:
Q  58 tcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  50275861 tcatcatctcctacatgctgctgctgtggtatatgatcctggtcatacctaccatcagtcacatcgtggtgtacctgatcctgataattcaggcactcca 50275762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 21021814 - 21021915
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||||| |||| |||||||||||    
T  21021814 catcatcgtctcctacatcctgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgatgtacctgatcctgatagttcaggtactc 21021913  T
Q  156 ca 157  Q
    ||    
T  21021914 ca 21021915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 37021004 - 37021104
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||  |||||  ||||||||||||||||    
T  37021004 catcatcgtctcctacatgctgctgctgtggtatattatcctggtcatacccatcatcagtcac-tcgtggtgtatctgatcttgataattcaggtactc 37021102  T
Q  156 ca 157  Q
    ||    
T  37021103 ca 37021104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 55406344 - 55406470
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||| ||||||| |||||||||||| ||||||||| | || ||||| |||||||||||||| ||||||  |||||||||||||||    
T  55406344 catcatcatctgctatatgatgctgctctggtatatgatcgtggtcatactcaccgtcagtaacatcgtggtgtacctgatcctaataattcaggtactc 55406443  T
Q  156 catctgctggctcgggtcaaccacctg 182  Q
     | ||  |||||||  |||||||||||    
T  55406444 tacctcttggctcgaatcaaccacctg 55406470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 10752448 - 10752526
Alignment:
Q  133 tgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaag 211  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||| |||| |||||| |||||||||| |||||    
T  10752448 tgatcctgataattcaggtactccacctactggctcgggtcaaccacctgtgactgttcaggctgtgtagcctaagaag 10752526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 10966217 - 10966295
Alignment:
Q  133 tgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaag 211  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||| |||| |||||| |||||||||| |||||    
T  10966217 tgatcctgataattcaggtactccacctactggctcgggtcaaccacctgtgactgttcaggctgtgtagcctaagaag 10966295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 11083002 - 11083107
Alignment:
Q  103 taccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtag 202  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||| ||| ||    |||| ||||||||| |||||| ||||| ||||| |||||||    
T  11083002 tacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggcactaca---cctgggtcgggtcaagcacctgtgactcatcaggttgtgtag 11083098  T
Q  203 cctgagaag 211  Q
    |||||||||    
T  11083099 cctgagaag 11083107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 30725736 - 30725818
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  30725736 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactcca 30725818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 21537466 - 21537564
Alignment:
Q  109 ccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgag 208  Q
    |||||||| |||||||||||||| |||||| ||||||| ||||||||||    || | ||||||||||||| || ||||||||||| |||||||||||||    
T  21537466 ccatcagtgacatcgtggtgtacctgatcctgataatttaggtactcca---actaggtcgggtcaaccacgtgtgactcttcaggttgtgtagcctgag 21537562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 41797922 - 41798004
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| |  ||||| |||||| |||| |||||||||||||    
T  41797922 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcataatgtacctgatcctgatagttcaggtactcca 41798004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 1308105 - 1308180
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  1308105 tgtggtatatgatcctggtcatatccaccatccgtcacatcatgttgtacctgatcctgatagttcaggtactcca 1308180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 6180724 - 6180799
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  6180724 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 6180799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 31422827 - 31422752
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  31422827 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 31422752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 41932652 - 41932731
Alignment:
Q  133 tgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagc 212  Q
    |||||| ||||||||||||| |||| || |||||||||||||||||||||||| | |||| | | ||||||| |||||||    
T  41932652 tgatcctgataattcaggtagtccacctcctggctcgggtcaaccacctgcgattattcaagctatgtagccggagaagc 41932731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 49091559 - 49091484
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  49091559 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 49091484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 49166154 - 49166079
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||| |||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  49166154 tgtggtatatgatcatggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 49166079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 11049559 - 11049640
Alignment:
Q  119 catcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagc 203  Q
    |||| |||||||| |||||| ||||||||||||||||||    |||| ||||| |||||||||| ||||||||||| ||||||||    
T  11049559 catcatggtgtacctgatcctgataattcaggtactcca---cctgggtcgggccaaccacctgtgactcttcaggatgtgtagc 11049640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 40357232 - 40357305
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||||||||||||||| || ||||| |||||||| |  ||||| |||||| |||| |||||||||||    
T  40357232 tgtggtatatgatcctggtcatatccaccatccgtcacatcatactgtacctgatcctgatagttcaggtactc 40357305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 55406837 - 55406896
Alignment:
Q  177 cacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    |||||| ||||||||||| |||||||| ||| ||||| ||| |||| |||||||||||||    
T  55406837 cacctgtgactcttcaggttgtgtagcatgataagcctcctccgaagtccctgaaccatc 55406896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 10752017 - 10752059
Alignment:
Q  145 ttcaggtactccatctgctggctcgggtcaaccacctgcgact 187  Q
    ||||||||||||| || ||||||||||||||||||||| ||||    
T  10752017 ttcaggtactccacctactggctcgggtcaaccacctgtgact 10752059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 10965786 - 10965828
Alignment:
Q  145 ttcaggtactccatctgctggctcgggtcaaccacctgcgact 187  Q
    ||||||||||||| || ||||||||||||||||||||| ||||    
T  10965786 ttcaggtactccacctactggctcgggtcaaccacctgtgact 10965828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 1308206 - 1308247
Alignment:
Q  168 cgggtcaaccacctgcgactcttcagggtgtgtagcctgaga 209  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||    
T  1308206 cgggtcaacaacctgtgactcttcaggctgtgtagcctgaga 1308247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 41613478 - 41613302
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||||||    
T  41613478 catcatcatctcctacatgttgctgctctggtatatgatcctggtcatacccaccatcagtaacatcgtggtgtacatgatcctgataattcaggtactc 41613379  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaac 232  Q
     | ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||    
T  41613378 tacctgttggctcggatcaaccacctgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaac 41613302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 49195394 - 49195574
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| |||||||| || | ||||||||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  49195394 catcatcatctgctatatgctgctcctctagtatatgatcctggtcatatccaccatcggtcacatcgtggtgtacctgatcctgataattcaggtactc 49195493  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||    
T  49195494 cacctgctggctcggatcaaccacctgcgactcttcaggctgtgtagcccgagaagcctcctgcgaactccctgaaccatc 49195574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 44230846 - 44230666
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||| | ||| ||| |||| || |||||||||||| ||||||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||    
T  44230846 catcatcatatgctatatgttgctactctggtatatgatcttggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 44230747  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||| |||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  44230746 cacctgctggctcggatcaaccacatgcgactcttcaggctgtgtagcctgagaatcctcctacgaactccctgaaccatc 44230666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 20351747 - 20351569
Alignment:
Q  58 tcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||| ||| ||| ||||||| |||||||||||||| ||||||||| ||||| || ||||| |||||||| |||||| ||||||||||||||||||    
T  20351747 tcatcatctgctatatgttgctgctttggtatatgatcctagtcatacccaccatccgtaacatcatggtgtacctgatcctgataattcaggtactcca 20351648  T
Q  158 tctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
     ||||||||| || ||||||||||||||||||||||| |||||||||||||||||  ||| ||||||||||||||||||    
T  20351647 cctgctggcttggatcaaccacctgcgactcttcaggctgtgtagcctgagaagcttcctgcgaactccctgaaccatc 20351569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 17567024 - 17567204
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||||||||||| || || |||||||||||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||    
T  17567024 catcatcatcttctacatgttgttgttgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacctgatcctgataattcaggtactc 17567123  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||||||||| ||||  ||||||| ||| ||||||   ||||||||| ||| ||||||||||||||||||    
T  17567124 cacctgctggctcgggtcaactacctatgactctttaggctgtgtaatatgagaagcctcctgcgaactccctgaaccatc 17567204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 20916945 - 20917125
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||| ||||||| ||||||||||| |||||||||||| ||||| || ||||| |||||||| |||||| ||||||||||||||||    
T  20916945 catcatcatctgctatatgttgctgctctggtatatgattctggtcatacccaccatccgtaacatcatggtgtacctgatcctgataattcaggtactc 20917044  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || || ||||||||| ||||||||||||||||||||||| |||||||||||||||||| | | |||| |||||||||||||    
T  20917045 cacctcctggctcggatcaaccacctgcgactcttcaggttgtgtagcctgagaagcctcatgcgaagtccctgaaccatc 20917125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 20925907 - 20926087
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||| ||||||| ||||||||||| |||||||||||| ||||| || ||||| |||||||| |||||| ||||||||||||||||    
T  20925907 catcatcatctgctatatgttgctgctctggtatatgattctggtcatacccaccatccgtaacatcatggtgtacctgatcctgataattcaggtactc 20926006  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || || ||||||||| ||||||||||||||||||||||| |||||||||||||||||| | | |||| |||||||||||||    
T  20926007 cacctcctggctcggatcaaccacctgcgactcttcaggttgtgtagcctgagaagcctcatgcgaagtccctgaaccatc 20926087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 48564071 - 48563895
Alignment:
Q  60 atcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatc 159  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||| | |||||| |||||||||||||||||| |    
T  48564071 atcatctgctatatgctgctgctctggtatatgatcctggtcatacccatcatcggtcacatcgtggtgttcctgatcctgataattcaggtactccacc 48563972  T
Q  160 tgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    | ||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||| | |||||| |||||||||    
T  48563971 tactggctcagatcaaccacctgcgactcttcaggttgtgtagcctgagaagcctcctgcaaactccttgaaccatc 48563895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 42757295 - 42757116
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||||||||||| |||||||| ||||||||||||||  |||||||||||| |||||||||| |||| | ||||||||||| ||||    
T  42757295 catcatcatctgctatatgctgctgctctggtatataatcctggtcataccaaccatcagtcacaacgtggtgtacctgattctgataattcagg-actc 42757197  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    |  || ||||||||| ||||||||||||||||||||||| | ||||||||||| |||| ||| |||| |||||||||||||    
T  42757196 cgcctcctggctcggatcaaccacctgcgactcttcaggctctgtagcctgagcagcctcctgcgaagtccctgaaccatc 42757116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 49268259 - 49268377
Alignment:
Q  118 acatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacct 217  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||    
T  49268259 acatcgtggtgtacttgatgctgataattcaggtactccacctgctggctcgggtcaaccacctgcgactcttcagactgtgtagcctgagaagcctcct 49268358  T
Q  218 acgaactccctgaaccatc 236  Q
     ||||||||||||||||||    
T  49268359 gcgaactccctgaaccatc 49268377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 47073132 - 47073233
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  47073132 catcatcgtctgctacatgttgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 47073231  T
Q  156 ca 157  Q
    ||    
T  47073232 ca 47073233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 52390314 - 52390415
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  52390314 catcatcgtctcctacatgctgctgatgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 52390413  T
Q  156 ca 157  Q
    ||    
T  52390414 ca 52390415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 16612212 - 16612111
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  16612212 catcatcgtctcctacatgctgctgctatggtatatgatcctagtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 16612113  T
Q  156 ca 157  Q
    ||    
T  16612112 ca 16612111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 22047041 - 22047142
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  22047041 catcatcgtctcctacatgctgctgctatggtatatgatcctagtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 22047140  T
Q  156 ca 157  Q
    ||    
T  22047141 ca 22047142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 3976852 - 3976753
Alignment:
Q  58 tcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  3976852 tcatcgtctcctacatgctgctgttgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactcca 3976753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 4007276 - 4007376
Alignment:
Q  58 tcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgta-cttgatccagataattcaggtactcc 156  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | |||||| |||||||||||||||||    
T  4007276 tcatcgtctcctacatgctgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtatcctgatcctgataattcaggtactcc 4007375  T
Q  157 a 157  Q
    |    
T  4007376 a 4007376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 48889827 - 48889743
Alignment:
Q  73 tgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  48889827 tgctgctgctctggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactcca 48889743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 50997144 - 50997045
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  50997144 catcatcgtctcctacatgctactgctgtggtatatgatccttgtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 50997045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 598018 - 597929
Alignment:
Q  68 ctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||| |||||| |||| |||||||||||||    
T  598018 ctacatgctgctgctgtggtatatgatcctggtcatacccaccatcagtcgtatcgtggtgtacctgatcctgatagttcaggtactcca 597929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 36128744 - 36128644
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||| || || |||||||||| |||||||||||||||| ||||||||||||||||    
T  36128744 catcatcgtctcctacatgctgctgttgtggtatatgatcctggtcatatccacc-tcagtcacattgtggtgtacttgatcctgataattcaggtactc 36128646  T
Q  156 ca 157  Q
    ||    
T  36128645 ca 36128644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 50215864 - 50215963
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||  || ||||||||||||||||    
T  50215864 catcatcatctcctacatgctgttgttgtggtatatgatcctggtcatacccaccatcagtcacattgtggtgtacctg--cctgataattcaggtactc 50215961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 30254945 - 30255029
Alignment:
Q  73 tgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||    
T  30254945 tgctgctgctctggtatatgatcatgatcatacccaccatcggtcacatcgtggtgtacctgatcctgataattcaggtactcca 30255029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 29010005 - 29009923
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||  |||| |||||||||||||    
T  29010005 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgttgtacctgatcttgatagttcaggtactcca 29009923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 2273861 - 2273950
Alignment:
Q  68 ctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||| |||| |||||||||||| ||||| ||||| || |||||||||||||| || ||||| |||||| |||| |||||||||||||    
T  2273861 ctacatgttgcttctgtggtatatgttcctgttcatatccaccatcagtcacatcatgttgtacctgatcctgatagttcaggtactcca 2273950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 46390089 - 46390012
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatc 159  Q
    ||||||||||||||||||||||| || || || ||||||||||| ||||| |||||| |||| |||||||||||||||    
T  46390089 tgtggtatatgatcctggtcatatccaccgtccgtcacatcgtgatgtacctgatcctgatagttcaggtactccatc 46390012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 34046514 - 34046439
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  34046514 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 34046439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 42903124 - 42903199
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  42903124 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 42903199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 49143397 - 49143472
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  49143397 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 49143472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 50479741 - 50479816
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  50479741 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 50479816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 54387262 - 54387187
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  54387262 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 54387187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 46700960 - 46701035
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || |  || |||||||| || ||||| |||||| |||| |||||||||||||    
T  46700960 tgtggtatatgatcctggtcatatccactgtctgtcacatcatgatgtacatgatcctgatagttcaggtactcca 46701035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 8731753 - 8731861
Alignment:
Q  99 gtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgt 198  Q
    |||||| || ||||||||  ||||||||||||  |||||| |||||||||||||||| |    |||| || | |||||||||||||| | |||| |||||    
T  8731753 gtcataaccaccatcagtggcatcgtggtgtatctgatcctgataattcaggtactcga---cctgggtcagatcaaccacctgcgattgttca-ggtgt 8731848  T
Q  199 gtagcctgagaag 211  Q
    |||||||||||||    
T  8731849 gtagcctgagaag 8731861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 9083640 - 9083748
Alignment:
Q  99 gtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgt 198  Q
    |||||| || ||||||||  ||||||||||||  |||||| |||||||||||||||| |    |||| || | |||||||||||||| | |||| |||||    
T  9083640 gtcataaccaccatcagtggcatcgtggtgtatctgatcctgataattcaggtactcga---cctgggtcagatcaaccacctgcgattgttca-ggtgt 9083735  T
Q  199 gtagcctgagaag 211  Q
    |||||||||||||    
T  9083736 gtagcctgagaag 9083748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 30255056 - 30255098
Alignment:
Q  169 gggtcaaccacctgcgactcttcagggtgtgtagcctgagaag 211  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||    
T  30255056 gggtcaacaacctgtgactcttcaggctgtgtagcctgagaag 30255098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 39948745 - 39948563
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  39948745 catcatcgtctcctacatgctgctgctgtggtatatgatcatggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 39948646  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatctc 238  Q
    || |||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| |||    |||||||||||||||||    
T  39948645 cacctgctggctcggatcaaccacctgcgactctttaggctgtgtagcctgagaagcctcctgttcactccctgaaccatctc 39948563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 36655320 - 36655499
Alignment:
Q  57 atcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcc 156  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||| || || ||||||||||| |||||| |||||||||||||||||    
T  36655320 atcatcatctcctacatgttgctgctctggtatatgatcctggtcatacccaccatctgtaacgtcgtggtgtacctgatcctgataattcaggtactcc 36655419  T
Q  157 atctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    | |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| | | ||||||||||||| ||||    
T  36655420 acctgctggctcggatcaaccacctgtgactcttcaggttgtgtagcctgagaagcctcttgcgaactccctgaaacatc 36655499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 10827946 - 10828047
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||  ||||||||||||||||    
T  10827946 catcatcgtctcctacatgctgctgctgtggtatatgatcctggtcatacccaccatctgtcacatcgtggtgtacctgatcttgataattcaggtactc 10828045  T
Q  156 ca 157  Q
    ||    
T  10828046 ca 10828047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 7187916 - 7187817
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  7187916 catcatcgtctcctacatgctgctgttgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 7187817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 29400492 - 29400593
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| |||  |||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||  ||||||||||||||||    
T  29400492 catcatcgtctcttacatgttgctgctgtggtatatgattctggtcatacccaccatccgtcacatcgtggtgtacctgatcatgataattcaggtactc 29400591  T
Q  156 ca 157  Q
    ||    
T  29400592 ca 29400593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 17421657 - 17421575
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  17421657 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 17421575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 15832263 - 15832181
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||| ||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  15832263 ctgctgatgtggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 15832181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 45429719 - 45429637
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||| ||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  45429719 ctgctgatgtggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 45429637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 5353093 - 5353018
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  5353093 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 5353018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 20931697 - 20931622
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||| |||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  20931697 tgtggtatatgatcttggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactcca 20931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 30495881 - 30495956
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  30495881 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 30495956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 43538672 - 43538747
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  43538672 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 43538747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 3939674 - 3939749
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||| |||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  3939674 tgtggtatatgatcctagtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 3939749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 43979658 - 43979583
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||  |||||| |||| |||||||||||||    
T  43979658 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtatctgatcctgatagttcaggtactcca 43979583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 6319492 - 6319668
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| | |||| ||||||||||||||||    
T  6319492 catcatcatctgctatatgctgctgctctggtatatgatcctggtcatacccaccatcagtcacatcatggtgtacattatcctgataattcaggtactc 6319591  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaac 232  Q
    || || ||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| |||| |||||||||    
T  6319592 cacctcctggctcggatcaaccacatgcgactcttcaggctgtgtagcctgagaagcctcctgcgaagtccctgaac 6319668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 24722986 - 24722834
Alignment:
Q  84 tggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgggtcaaccacctgc 183  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| |||||  |||||||||||||||||| || ||||||| | ||||||||||||    
T  24722986 tggtatatgatcctggtcatacccaccattagtcacatcgtggtgtacctgatcttgataattcaggtactccacctcctggctcagatcaaccacctgc 24722887  T
Q  184 gactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    ||||||| ||| |||||||||||||||||| ||| |||| |||||||||||||    
T  24722886 gactcttaaggctgtgtagcctgagaagcctcctgcgaagtccctgaaccatc 24722834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 24087698 - 24087782
Alignment:
Q  76 tgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatct 160  Q
    ||||||| | |||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  24087698 tgctgctctagtatatgatcatggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccatct 24087782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 27617861 - 27617779
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||| | |||| |||||||||||||    
T  27617861 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgattctgatagttcaggtactcca 27617779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 6202287 - 6202212
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  6202287 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 6202212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 11689254 - 11689179
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  11689254 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 11689179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 22302319 - 22302244
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  22302319 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 22302244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 30828586 - 30828661
Alignment:
Q  82 tgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| |||||||||||||    
T  30828586 tgtggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 30828661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 21601476 - 21601433
Alignment:
Q  167 tcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaa 210  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  21601476 tcgggtcaaccacctgcgactgttcaggctgtgtagcctgagaa 21601433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 17884 - 18062
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||| ||||||||||||||||| |||||| ||||||||||||||||    
T  17884 catcatcatcttctatatgctgctgctttggtatatgatcctggtcatacccactatcggtcacatcgtggtgtacctgatcctgataattcaggtactc 17983  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaacca 234  Q
    || ||||||| |||| ||| |||||| ||||| |||||| |||||| ||||||||||| ||| ||||||||||||||||    
T  17984 cacctgctggttcggatcacccacctacgacttttcaggctgtgtatcctgagaagcctcctgcgaactccctgaacca 18062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 5198084 - 5197904
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    |||||| |||| ||||||| ||||||| | ||| |||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||    
T  5198084 catcattatctcctacatgttgctgctctagtaaatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 5197985  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    || |||||||||||| |||||||| || ||||||||||| |||||||||||||||||| |||  |||||||||||||||||    
T  5197984 cacctgctggctcggatcaaccacatgtgactcttcaggctgtgtagcctgagaagcctcctgtgaactccctgaaccatc 5197904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 40623849 - 40624006
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    |||||||||||  || ||| || |||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||    
T  40623849 catcatcatctggtatatgttgttgctctggtatatgatcctggtcatacccaccatcagtcgcatcgtggtgtacctgatcctgataattcaggtactc 40623948  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagcc 213  Q
    || || || | ||||| |||||||||||||||||||||  ||||||||||| ||||||    
T  40623949 cacctcctaggtcgggccaaccacctgcgactcttcagactgtgtagcctgcgaagcc 40624006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 7758453 - 7758352
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| ||    
T  7758453 catcatcgtctcctacatgctgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtattc 7758354  T
Q  156 ca 157  Q
    ||    
T  7758353 ca 7758352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 42941412 - 42941513
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||| |||||| |||||||||    
T  42941412 catcatcatctcctacatgctgctgctgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacctgatcctgataatccaggtactc 42941511  T
Q  156 ca 157  Q
    ||    
T  42941512 ca 42941513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 8701176 - 8701306
Alignment:
Q  71 catgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgg 170  Q
    |||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| || || |||| || |    
T  8701176 catgttgctgctctggtatatgatcctgatcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtacttcacctcctgggtctg 8701275  T
Q  171 gtcaaccacctgcgactcttcagggtgtgta 201  Q
    |||| | ||||| ||||||||||| ||||||    
T  8701276 gtcagcaacctgtgactcttcaggctgtgta 8701306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 38969213 - 38969076
Alignment:
Q  71 catgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactccatctgctggctcgg 170  Q
    |||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||| |||||| |||||| ||||||||||  || | |   |||    
T  38969213 catgctgctgctctggtatatgatcccggtcatacccaccattagtcacatcgtggtgtacctgatcctgataatgcaggtactccgcct-cag--acgg 38969117  T
Q  171 gtcaaccacctgcgactcttcagggtgtgtagcctgagaag 211  Q
    |||||| ||||| ||||||||||| |||||||||| |||||    
T  38969116 gtcaacaacctgtgactcttcaggctgtgtagcctaagaag 38969076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 42538208 - 42538113
Alignment:
Q  141 ataattcaggtactccatctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgagaagccacctacgaactccctgaaccatc 236  Q
    ||||||||| |||||||  ||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||| ||| ||||||||||||||||||    
T  42538208 ataattcagatactccacatgctggctcggatcaaccacctgcgactcttcaggttgtgtggcctgagcagcctcctgcgaactccctgaaccatc 42538113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 209
Target Start/End: Original strand, 13740 - 13890
Alignment:
Q  56 catcatcatcttctacatgctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactc 155  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||||||| || |||||||||||||| || | ||| |||||| |||| |||||||||||    
T  13740 catcatcgtctcctacatcctgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgttatacctgatcctgatagttcaggtactc 13839  T
Q  156 catctgctggctcgggtcaaccacctgcgactcttcagggtgtgtagcctgaga 209  Q
    || |  | | ||  ||||||| ||||| ||||| ||||| ||||||||||||||    
T  13840 ca-ccccagact--ggtcaacaacctgtgactcctcaggctgtgtagcctgaga 13890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 8579450 - 8579532
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||||  |||| |||||||||||||    
T  8579450 ctgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgttgtacctgatcttgatagttcaggtactcca 8579532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 19040044 - 19040126
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  19040044 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 19040126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 19227895 - 19227973
Alignment:
Q  79 tgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||||| || ||| ||||||||| ||||||||    
T  19227895 tgctctggtatatgatcatggtcatacccaccatcagtcacatcgtggtgtacctggtcctgataattcaagtactcca 19227973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 27672596 - 27672678
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||| || ||||| |||||| |||| |||||||||||||    
T  27672596 ctgctgctgtggtatacgatcctggtcatatccaccatcagtcacatcatgctgtacctgatcctgatagttcaggtactcca 27672678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 30706231 - 30706149
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  30706231 ctgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactcca 30706149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 28240767 - 28240849
Alignment:
Q  75 ctgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||||| ||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||| |||| |||||||||||||    
T  28240767 ctgctgatgtggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactcca 28240849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 28877768 - 28877687
Alignment:
Q  76 tgctgctgtggtatatgatcctggtcataccctccatcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    ||||||||||||||||||||||||||||| || || || |||||||| || ||||| |||||| |||| ||||| |||||||    
T  28877768 tgctgctgtggtatatgatcctggtcatatccaccgtccgtcacatcatgctgtacctgatcctgatagttcagatactcca 28877687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 27672705 - 27672745
Alignment:
Q  169 gggtcaaccacctgcgactcttcagggtgtgtagcctgaga 209  Q
    |||||||| ||||||||||| ||||| ||||||||||||||    
T  27672705 gggtcaacaacctgcgactcctcaggttgtgtagcctgaga 27672745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 14603 - 14648
Alignment:
Q  112 tcagtcacatcgtggtgtacttgatccagataattcaggtactcca 157  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||||    
T  14603 tcaggcacatcgtggtgtacctgatcctgataattcaggtactcca 14648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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